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Sciadopitys Verticillata (Japanese Umbrella Pine) Id #783, Claire Cavanagh

BIO 140 Arboretum Project

Location: Back of Library, West side of Parking Lot

Students Interest And Thoughts On Stem, Chrisitine Girtain

STEM Month

I am Juan Sebastian Bohorquez Mora, I am a sophomore student at Toms River High School North. I am interested in biofuels because I believe they are a good option to replace fossil fuels. I am also interested in duckweed because biofuels are made out of crops, and people need to eat those crops. That’s when duckweed comes in and it can be used as a feedstock for ethanol production which is a biofuel. Bioethanol is a type of biofuel and it is derived from the corn’s starch. Instead of making ethanol from the corn’s starch, we can use duckweed …

Aeromonas Phage Research And The Public Health Impact Of Antibiotics In Aquaculture Workers, Madelyn Merchant

Honors Projects

One of the most common fish diseases in aquaculture is Aeromonas infection. The most common way to treat this infection is through antibiotics. The bacteria in the fish can become antibiotic-resistant and perpetuate the disease. The diseases in fish create a huge financial loss and the industry loses $6 billion per year due to diseases in fish. An alternative to antibiotics is bacteriophage which causes less environmental degradation and is better for human gut flora. In aquaculture there have been examples of aquaculture workers becoming sick from the water in aquaculture ponds as well as from people eating the fish. …

Characterization Of Immunity Systems In A Cluster Phages, Katherine Cleary

Chemistry & Biochemistry Student Scholarship

Katherine Cleary ’23
Major: Biochemistry
Faculty Mentor: Dr. Kathleen A. Cornely, Chemistry and Biochemistry

Bacteriophages are viruses that infect bacteria. Bacteriophages may use two different cycles to infect their hosts, which are the lytic cycle and the lysogenic cycle. During the lysogenic cycle, the phage genome integrates into the bacteria chromosome and becomes a part of the host. If a phage remains in the lysogenic cycle, the host is susceptible to infection from other bacteriophages. This process is known as superinfection and it can have a variety of outcomes. Homoimmunity occurs when the phages have similar repressor proteins. Heteroimmunity occurs …

How Social Behavior And Interactions Scale With Group Size In Drosophila Melanogaster, Leigh Paradis

Biology Student Scholarship

Leigh Paradis ’23
Majors: Biology and Neuroscience
Faculty Mentor: Dr. James Waters, Biology

The goal of this research project was to quantify interaction patterns in groups of fruit flies and determine if flies show evidence for a linear or non-linear effect of group size on their behavior. Specifically, I tested whether flies interact with each other at a constant rate, whether this depends on density or group size, and whether their interaction patterns correlate with overall energy use and metabolic rates. This research questions common assumptions about the differences between eusocial societies such as ants and bees and the solitary …

Effect Of Dietary Protein On Honey Bee Pollen Foraging Behavior, Caitlin Mchugh, Gracey Sorensen

Biology Student Scholarship

Caitlin McHugh ’24, Majors: Environmental Biology and Economics

Gracey Sorensen ’23, Major: Biology

Faculty Mentor: Dr. Rachael Bonoan, Biology

Bees obtain nutrients from flowers. Pollen provides proteins and fats; nectar provides carbohydrates. Commercial honey bee colonies pollinate monocultures, which contain one crop type thus, one unbalanced nutritional resource. We examined how a lack of protein diversity affects honey bee pollen foraging behavior. Bees were raised on three diet treatments: no manipulation, all 10 essential amino acids (EAAs, i.e., protein building-blocks), or only 6/10 EAAs. Bee-collected pollen was trapped upon return to the hive and nutritional content was analyzed. We predict …

Even More Lesser Spotted Animals, Amanda Morgan

Children's Book and Media Review

Meet the underdogs of the animal kingdom. they're not as praised as lions, tigers and other big shot mammals, but this book is here to show you why they should be. The dingiso basically looks like a living breathing teddy bear and can jump to the ground from a 60 foot tree without receiving injury. The forest musk deer, unlike real deer, hangs out in trees. The little yellow-throated marten which, as the name suggests, has bright yellow fur, can take down an entire deer. The gerenuk and the dibatags are antelope with necks like giraffes. In learning about all …

Chromatin Architecture: Mechanisms Of Gene Regulation, Logan O'Donnell

Honors Projects in Science and Technology

The rapid growth and division of cells as they proliferate and penetrate to surrounding tissues defines the collection of disease states known as cancer. Abnormal gene expression drives this uncontrollable replication of cells. In recent studies, aberrant HOX gene expression has been noted in a multitude of cancer types such as myeloid leukemia, prostate cancer, and breast cancer [1]. Within cancerous cells with aberrant HOX expression, late expressing HOX genes are suppressed while early expressing HOX genes are reactivated. HOX genes are significant in controlling early phases of organismal development such as cell cycle, cell movement, and gene expression. Likewise, …

Food For Thought: The Relationship Between Nutrition And Academic Performance, Sarah Freeman

Honors Projects in Science and Technology

Nutrition has been shown to impact the level of cognitive function in individuals. Through the analysis of nutritional diets, this new research will aim to uncover the impact that diet has on cognitive function of Bryant University students by analyzing their ability to perform on a variety of cognitive assessments. This study will provide recommendations to students at Bryant University on what they should eat so they can perform their best academically. This research will also investigate whether Bryant University is offering the best food for students to eat setting them up for success.

Laurier Biology Departmental Seminars Poster Colouring Book (Vol 1), Tristan A.F. Long

Biology Faculty Publications

Departmental seminar posters are largely utilitarian affairs – who is talking?, when are they speaking?, where is the seminar? (and maybe will there will be refreshments served?). While functional, they often fail to capture the beauty and excitement of their subject matter, and may fail to engage a wider audience. As the organizer of the Wilfrid Laurier University Department of Biology seminar series in 2014, on a lark, I started drawing posters that tried to illustrate our speaker’s research in a non-conventional manner, and hopefully appeal to those that might otherwise find attending a departmental seminar intimidating. Little did I …

Bci Validation: Yfiler Plus Kit Validation, Chloe Koon

Honors Projects

In order to have access and use the Combined DNA Index System (CODIS), it is required by the Federal Bureau of Investigation's Quality Assurance Standards (FBI-QAS) for Forensic DNA Units to complete comprehensive validation studies on all equipment, materials, and methods used in the process of DNA analysis. This study continues validation previous done within the Ohio Bureau of Criminal Investigation (BCI). YFiler Plus is a DNA amplification kit that is used in cases where it is most useful to examine only male DNA profile(s) within a sample by amplifying loci only on the Y-Chromosome. Components of this study include …

Something Rotten: A Fresh Look At Roadkill, Rebecca Lambert

Children's Book and Media Review

Have you ever wondered what happens to those animals that meet an unfortunate end on the highway? Heather Montgomery, a writer and biologist from Alabama, answers every question you never knew you had about roadkill. Did you know that Tasmanian Devils are endangered, in part because of a contagious cancer? Scientists learned that from roadkill. Did you know that an invasive species of python has brought parasites to the native snakes of Florida? Scientists learned that from roadkill, too. This book explains how flattened animals are used for all sorts of bizarre purposes. Scientists study roadkill to learn more about …

A Preliminary Comparative Study Of Molecular Visualization Software For Education, Ruoming Shen

Modeling, Simulation and Visualization Student Capstone Conference

Chemistry and biology are sciences vital for understanding metabolic processes, developing disease treatments, and improving environmental conditions. With extensive knowledge of biochemistry, we can take advantage of a material’s unique chemical composition and properties in various applications. Visualization software is essential for analyzing complex chemical and biological structures and predicting their interactions with each other. This paper presents a preliminary study of three open source molecular visualization software tools - Visual Molecular Dynamics (VMD), Jmol, and Mol*, and evaluates their strengths and deficiencies. This paper utilizes the March Molecule of the Month, Vascular Endothelial Growth Factor (VEGF), from the Protein …

A Multi-Spatial Analysis Of Land Use Effects On Freshwater Mussels In The Upper Cuyahoga River And Tinkers Creek, Tamar Atwell

ETD Archive

Mussels are considered one indicator of good water quality in rivers, but over the past 20 years mussel populations have continued to decline, while water quality improves. According to the Ohio Environmental Protection Agency (OEPA), water quality in the Cuyahoga River is now within safe levels for all parameters. However, what are safe levels for humans may not be safe for mussels. An analysis of freshwater mussel populations in two similarly sized watersheds, the Upper Cuyahoga River and Tinkers Creek was conducted. Correlations of mussel abundance and diversity were assessed by multivariate GIS/remote sensing tools to contrast water flow rates, …

Health And Kinesiology News, Georgia Southern University

Health Sciences & Kinesiology: News & Publications (2015-2023)

• Annual Experimental Biology Conference

Analysis Of Invasive Aedes Japonicus Populations And Bloodmeals In Rural, Suburban, And Urban Land-Use Conditions, Matthew Oberholtzer Ms

Student Scholarship

Adult female mosquitoes were collected at six sites with differing land-use and

livestock characteristics to characterize populations and bloodmeal habits of the invasive

vector mosquito species, Aedes japonicus in Southern Maine. Mosquitoes were collected

and DNA was extracted for PCR amplification of cytochrome C oxidase I (COi)

mitochondrial DNA for barcoding analysis of vertebrate bloodmeals. A total of 7460

adult female mosquitoes were collected, with 444 being Ae. japonicus (5.6%). This

indicates an established breeding population of Ae. japonicus in Southern Maine. The

rural site adjacent to livestock had the highest yield of total mosquitoes as well as the

catch …

Alewife (Alosa Pseudoharengus) Contributions To Lake Phosphorus Budgets: Implications For Management, Meg "Rue" Farley Thurrell Ms

Student Scholarship

As human-made dams are removed and fish passage at dams is improved in

support of restoration efforts, anadromous alewives (Alosa pseudoharengus) gain

access to historic spawning grounds. As they migrate to spawn, adult alewives import

marine derived nutrients to lakes and impoundments. Young of year alewives (juveniles)

export nutrients as they emigrate to the sea. These nutrients support primary

production and are incorporated into freshwater food webs. However, many lakes in

New England are mesotrophic or eutrophic. Additional nutrients, specifically

phosphorus (P), may exacerbate water quality issues. To examine these issues, I

compared outputs ofan alewife nutrient and population model …

Ubjective Information And Survival In A Simulated Biological System, Tyler S. Barker, Massimiliano Pierobon, Peter J. Thomas

School of Computing: Faculty Publications

Information transmission and storage have gained traction as unifying concepts to characterize biological systems and their chances of survival and evolution at multiple scales. Despite the potential for an information-based mathematical framework to offer new insights into life processes and ways to interact with and control them, the main legacy is that of Shannon’s, where a purely syntactic characterization of information scores systems on the basis of their maximum information efficiency. The latter metrics seem not entirely suitable for biological systems, where transmission and storage of different pieces of information (carrying different semantics) can result in different chances of survival. …

Targeted Nucleic Acid Delivery To The Endothelium, Melanie Reschke

Yale Graduate School of Arts and Sciences Dissertations

The human endothelium extends throughout nearly all tissues in the body, and has an estimated total surface area of up to seven thousand square meters [1]. This expansive monolayer of endothelial cells (ECs) serves as the interface between materials circulating in the bloodstream and the internal tissues of the body. Even in its quiescent state, the endothelium is actively signaling and reacting in order to support the basic functions of the vascular system – transporting oxygen, nutrients, and waste. A closer look reveals that the cells that make up this endothelial lining are diverse in their phenotypes and functions, dependent …

Dissecting The Contributions Of Langerhans Cells To Skin Wound Healing And The Angiogenic Niche, Renee R. Wasko

Yale Graduate School of Arts and Sciences Dissertations

Mammalian skin is complex, heterogeneous, and essential for survival. It is the primary barrier that protects us from physical, microbial, and chemical hazards, and must therefore be highly regenerative. When skin is wounded, healing occurs through a series of temporally-overlapping and tightly regulated stages of inflammation, proliferation, and remodeling. Angiogenesis, the growth of new blood vessels from pre-existing vessels, occurs during the proliferative phase of repair and is essential for the formation of new, healthy tissue. Blood vessels are a vital source of oxygen, nutrients, and immune cells, and failure of these vessels to regenerate after injury results in chronic, …

Studying Disease Dynamics With Manifold Learning, Manik Razdan Kuchroo

Yale Graduate School of Arts and Sciences Dissertations

In an effort to computationally predict causal genetic networks and derive biological pathways empirically, biomedical scientists have begun to design increasingly complicated single cell experiments. A single study can now sequence millions of cells from hundreds of patient samples across different chronological timepoints or stages of disease progression with multiple measurement modalities. None of these additional complexities, however, are adequately addressed by the current state-of-the-art computational tools. Current machine learning techniques ignore these valuable sources of information by either downsampling the number of cells to a computationally tractable number or discarding experimental information, like stage of disease, modality or timepoint, …

Identification And Characterization Of Epigenetic Regulators Of Breast Cancer Metastasis, Jocelyn Fang-Yi Chen

Yale Graduate School of Arts and Sciences Dissertations

Cancer metastasis remains a major clinical challenge for cancer treatment. It is therefore crucial to understand how cancer cells establish and maintain their metastatic traits. Emerging evidence suggests that key steps of metastasis are controlled by reversible epigenetic mechanisms, which can be targeted to prevent and treat the metastatic disease. Although a variety of epigenetic mechanisms were identified to regulate cancer metastasis, including the well-studied DNA methylation and histone modifications, there are very few epigenetic drugs for cancer treatment and currently none of them was approved specifically for metastasis. Thus, we aim to uncover novel epigenetic regulators and identify the …

Β-Catenin Nuclear Transport In Wnt Signaling: Kap-Β2/Transportin Mediates Nuclear Import Of Β-Catenin Via A Py-Nls Motif In A Ran Gtpase Dependent Manner, Woong Y. Hwang

Yale Graduate School of Arts and Sciences Dissertations

Wnt signaling is essential for embryonic development and adult tissue homeostasis; mutations in Wnt pathway components are major drivers of multiple diseases especially cancer. β-catenin is a key effector in this pathway that translocates into the nucleus and activates Wnt responsive genes. However, due to our lack of understanding of β-catenin nuclear transport, therapeutic modulation of Wnt signaling has been challenging. Here, we took an unconventional approach to address this long-standing question by exploiting a heterologous model system, the budding yeast Saccharomyces cerevisiae, which contains a conserved nuclear transport machinery. In contrast to prior work, we demonstrate that β-catenin accumulates …

Drosophila Chemoreception And Threats Of The Anthropocene, Shuke Xiao

Yale Graduate School of Arts and Sciences Dissertations

The term ‘odorant-binding proteins (Obps)’ is used to refer to a large family of insect proteins that are exceptional in their number, abundance and diversity. The name derives from the expression of many family members in the olfactory system of insects and their ability to bind odorants in vitro. However, an increasing body of evidence reveals a much broader role for this family of proteins. Recent results also provoke interesting questions about their mechanisms of action, both within and outside the olfactory system. Here we describe the identification of the first Obps and some cardinal properties of these proteins. We …

Ecological Stressors Impact Soil Biodiversity, Kaleb Frierson, John Carlile

Transformations: Presentation Slides

Soil biodiversity serves ecologically important roles like nutrient cycling and is used as an indicator of community disturbance. North American forests host a multitude of ecological stressors, including invasive plants, earth worms, and deer abundance. While relationships between deer and invasive species, as well as relationships between macroinvertebrates and worms have been heavily investigated, the effects of invasive plant species like Pale Swallowwort on soil biodiversity are unknown. To test our hypothesis that Pale Swallowwort affects soil biodiversity, we collected leaf litter from three state parks throughout Central New York at sites with and without the invasive plant. Samples were …

Life Line Spring 2022, Otterbein Biology And Earth Science Department

Life Line - The Biology Department Newsletter

In this Issue:

A CURE for the Typical STEM Classroom; Attracting Cardinals; Svitana Provides Training to IHS; The Cardinal Science Scholar Program; Mornings with Manatees; Viewing the Department from a New Perspective; Science Lecture Series Features Dr. Tyrone Hayes; Internship with Beinhower Brothers Drilling Company; New Student Chapter: The Botanical Society of America; STEM Art Show 2021; Got Bones?; The Robert and Ann Harting Endowed Award; Grossology Returns; Class Flocks to National Aviary

Biology (Nucleo)Tidings- Spring 2022, Biology Department Staff

Biology (Nucleo)tidings

News from the Biology Department at Northeastern Illinois University

“Pandemias Políticas: The Effects Of Political And Social Instability On Infectious Disease Epidemiology In Latin America"”, Sarah H. Noonan

Senior Theses

This paper seeks to analyze the relationship between political and social unrest and conflict and infectious disease epidemiology in Latin America. An analysis of published literature regarding epidemiological, biomedical, political, and historical content was conducted to highlight potential connections between infectious disease epidemics and sociopolitical conflict in the region. Specific analyses of Smallpox, Venezuelan Equine Encephalitis, Chagas disease, Cholera, Dengue, and COVID-19 were conducted, in an effort to uncover potential causations and context of epidemics of these conditions. Results of this analysis depict a necessity for further research into public health and disease control mechanisms during times of conflict and …

Tangled Up In Tanglegrams, Drew Joseph Scalzo

Theses and Dissertations

Tanglegrams are graphs consisting of two rooted binary plane trees with the same number of leaves and a perfect matching between the two leaf sets. A Tanglegram drawing is a special way of drawing a Tanglegram; and a Tanglegram is called planar if it has a drawing such that the matching edges do not cross. In this thesis, we will discuss various results related to the construction and planarity of Tanglegrams, as well as demonstrate how to construct all the Tanglegrams of size 4 by looking at two types of rooted binary trees - Caterpillar and Complete Binary Trees. After …

Functional Analysis Of Stn1 Winged-Helix (Wh) Domains, Anna Bazell

Senior Theses

CST (CTC1-STN1-TEN1) is a heterotrimeric RPA-like protein complex that preferentially binds to single-stranded DNA (ssDNA). CST is conserved from yeast to humans and has been found to play a role in telomere maintenance, DNA replication, and DNA repair. Mutations in CST, specifically in the subunits of CTC1 and STN1, have been implicated in the development of the genetic diseases Coats plus and dyskeratosis congenita. Despite the known functions of CST, the mechanistic relationship between its structure and function has yet to be characterized, particularly with respect to its protein-protein interactions and DNA binding. An X-ray crystallography structure of CST revealed …