Digital Commons Network^™

Development Of A Python Pipeline For The Inference Of Selection In Human Genomes And Applications To Adh1b*2, Aine Macdermott

Honors Theses

Human evolutionary genomics provides an avenue to understand how genetic variation has been impacted by the environmental pressures of the past, revealing how selective pressures impacted past populations and contributed to present-day biological diversity. In this thesis, I describe the construction of a Python-based computational pipeline designed to automate and integrate multiple analyses of positive selection across worldwide population datasets, including derived allele frequency calculation, haplotype-based tests of selection, RELATE-based genealogical inference, and CLUES2-based temporal modeling. By automating file preparation, format conversion, job submission, result aggregation, model comparison, and visualization, this pipeline streamlines the data interpretation process, and shifts focus …

The Conscription Imperative: A Philosophical, Paternalist, And Egalitarian Case For Universal National Service, Timothy Wenhsiang Khoh

Honors Theses

Inspired by my experience as a conscript for two years prior to college, this three-chapter honors thesis presents a philosophical justification and proposal for an American implementation of a national service model. This thesis seeks to justify conscription (a) on moral/ethical grounds as a coercive measure, (b) as a paternalistic policy, and (c) on egalitarian grounds. More broadly, my national service proposal contributes to the debate on methods and measures the American government ought to pursue to increase equity and solidarity among an ever-polarized citizenry.

Mnes Vs. Local Firms’ Resilience To Global Shocks: Evidence From The 2008 Financial Crisis And Covid-19, Yijie Wang

Honors Theses

This thesis examines whether multinational enterprises (MNEs) are more resilient than domestic firms during major global shocks, using the 2008 Financial Crisis and COVID-19 as case studies. Although MNEs may benefit from diversification, internal capital markets, and foreign linkages, they may also face greater exposure to global demand shrinkage and supplychain disruption.

Using Compustat North America firm-level panel data from WRDS, this study analyzes publicly listed U.S. and Canadian firms across 2007–2013 and 2018–2024. Firm resilience is measured through net sales, net income, and gross profit using a two-way fixed effects panel model. Multinational status is identified through two different …

Associations Between College Students' Belonging, Classroom-Based Relationships, And Mental Health Outcomes, Ella Grace Will

Honors Theses

Humans have a fundamental need to belong (Baumeister & Leary, 1995). A lack of belonging is associated with negative mental health outcomes, making it important to study student belonging in higher education (Strayhorn, 2019). Classroom-based relationships with professors and peers positively impact students' belonging (Tinto, 1993). The purpose of this study was to evaluate: the relative contribution of professor trust and peer interactions to classroom and university belonging, and to assess the associations between student belonging and internalizing symptoms. Survey data were collected via Qualtrics in September 2025 (baseline) and December 2025 from students in 32 first-year seminars participating in …

Maladaptive Shame Coping: The Effects Of Parental Emotion Socialization And Mentalization In The Context Of Maltreatment, Ayelet Raya Malinsky

Selected Full-Text Dissertations 2020-

Among the self-conscious emotions—such as guilt, shame, and embarrassment—shame has increasingly received attention in the clinical literature for its established link to a range of psychopathological outcomes (Paulo et al., 2020). It is a prominent experience for individuals with histories of childhood maltreatment (Herman, 2012) and plays a central role in the development and maintenance of symptoms related to trauma and personality disorders (Lee et al., 2001). Further, maladaptive coping strategies used to manage shame often exacerbate psychological distress (Martin et al., 2021), highlighting a need to identify factors that contribute to the development of chronic shame and related coping …

Reproductive Rights & Absolutist Abortion Bans: Beatriz V. El Salvador & Human Rights Standards In The Inter-American Court Of Human Rights, Jordan Schucker

Human Rights Brief

On December 20, 2024, the Inter-Amer­ican Court of Human Rights (IACtHR) issued its judgment in Beatriz v. El Salvador. The case concerned an impoverished Salvadoran woman, known as Beatriz, who had severe pre-existing conditions impacting her pregnancy, including systemic lupus erythematosus, lupus nephritis, and rheumatoid arthritis. After a first pregnancy,  in 2012 that triggered severe preeclampsia, she became pregnant again in 2013. Ultrasounds showed the fetus was anencephalic, making it incompatible with life outside the uterus.

The Great Divide: The Relationship Between Perceived Immorality And The Work Of Artists, Caelyn R. Anderson

Psychology | Senior Theses

The psychological response one has when viewing art depends heavily on contextual understanding. More specifically, when a viewer learns negative biographical information about perceived immorality of an artist, it can negatively affect their relationship with that artist's work (Kaube et al., 2023). The sample was made up of 134 participants randomly assigned to one of two groups exposed to either positive or negative information about the artist Paul Gauguin. After viewing information, participants were shown three different paintings, before being asked to respond to an intentionality scale, and two art reception scales. An independent samples t-test showed that there is …

Tainted Love: Examining Romantic Obsession And Relational Tragedy In Modern Art, Caelyn R. Anderson

Visual Studies | Senior Theses

Many viewers are drawn to the period of modern art, as so many unique artistic movements arose under its umbrella. From Cubism to Expressionism, the freedom with which artists experimented with personal styles during this time period resulted in the creation of many remarkable works. This artistic freedom often extended into the social lives of artists, as many of them adopted unconventional bohemian lifestyles. The four couples discussed in this essay: Unica Zürn and Hans Bellmer, Francis Bacon and George Dyer, Oskar Kokoschka and Alma Mahler, and Jeanne Hubertene and Amedeo Modigliani, all had relationships that were fraught and strange, …

January 2026, Swosu Rural Health Center

RURAL ROCKS

• Age-Friendly Requirements for Hospital Quality Reporting
• APhA secures key congressional win allowing pharmacists to prescribe buprenorphine with specialized training
• "When the hospital leaves town"
• Med Spa Illicit GLP-1s | Supply Chain Safety
• CMS unveils new model aimed at functional, lifestyle medicine

Enhancing The Sectra Educational Portal: Incorporating Resources Into An Integrated Medical Curriculum, Daniël Johannes Van Tonder, Dietrich Lorke

COM Scholarship

Introduction: In contemporary medical curricula, anatomy education frequently encounters fragmentation due to the reliance on disparate resources, including gross anatomy platforms, histology and pathology websites, radiological imaging repositories, and separate assessment tools. This cognitive switching can disrupt the learning flow and hinder the integration of micro- and macroscopic concepts. At Roseman University of Health Sciences (RUCOM), we aimed to centralize the student learning experience by utilizing the Sectra Educational Portal (SEP) not merely as a visualization tool but as a primary hub for asynchronous learning. This presentation outlines our workflow for embedding interactive H5P exercises and external histology repositories directly …

Resilience Shields And Grit Intensifies Subjective Cognitive Decline In Middle‐To‐Older Aged Black Americans, Sunkanmi Folorunsho, Maria Clark, Obinna Odo, Yolanda L. Jackson, Candidus C. Nwakasi, Darlingtina K. Esiaka

Behavioral Science Faculty Publications

Background: There is growing interest on the relationship between psychosocial factors and cognitive health trajectories in adulthood. While grit and resilience have been shown to influence health outcomes, their differential effects on subjective cognitive decline (SCD) in Black American adults remain understudied. The purpose of this study is to help fill this gap.

Methods: The study utilized a cross-sectional research design. Black American participants (N = 242; Mean age = 44.32) responded to a survey assessing SCD, grit, resilience, and sociodemographic factors. Linear regression analysis was performed to test the associations between grit and resilience and SCD, and to …

Evidence Of Heterogeneity In The Opioid Withdrawal Syndrome: Spontaneous And Precipitated Withdrawal, Suky Martinez, Jermaine D. Jones, Kelly E. Dunn, Andrew Huhn, Joshua A. Lile, Thomas P. Shellenberg, Laura Brandt

Behavioral Science Faculty Publications

Aims: This study characterized the heterogeneity of opioid withdrawal by comparing naturally occurring withdrawal during opioid abstinence (spontaneous withdrawal) with abrupt, pharmacologically induced naloxone-precipitated withdrawal in adults with Opioid Use Disorder (OUD).   Methods: A secondary analysis was conducted on de-identified data from 86 adults meeting DSM-5 criteria for moderate-to-severe OUD. Participants either presented in spontaneous withdrawal (n = 28) or underwent naloxone challenge to precipitate withdrawal (n = 58). Withdrawal symptoms were rated using the Wang procedure. Principal Component Analysis (PCA) of binary symptom data was performed to identify dominant patterns of symptom co-occurrence. Separate PCAs were then …

Fiber-Reinforced Composites For Vaginal Tissue Engineering Applications, Samyuktha S. Kolluru, Abir Hamdaoui, Annabella M. Mascot, Siobhan S. Sutcliffe, Jerry L. Lowder, Michelle L. Oyen, Samantha G. Zambuto

Mechanical Engineering Faculty Publications

The vagina is a fibromuscular tube-shaped organ that plays critical roles in menstruation, pregnancy, and female sexual health. Vaginal tissue constituents, including cells and extracellular matrix components, contribute to tissue structure, function, and prevention of injury and pathology. However, much microstructural function remains unknown, including how the fiber-cell and cell–cell interactions influence macromechanical properties. A deeper understanding of these interactions will provide critical information needed to reduce and prevent vaginal pathologies. Our objective for this work is to design a novel tissue-mimicking biomaterial for vaginal tissue engineering, and characterize its biological and mechanical performance in the vaginal microenvironment. We successfully …

Reorienting Library Technology Through Slowness And Care, Sanjeet Mann

Library Faculty Publications & Presentations

Nearly all operations and services in contemporary libraries are mediated by technology. This makes systems and technology work an important place in the organization from which to address issues of time, power and culture.

In this essay, published as a chapter in a collection of essays about Slow Librarianship, I describe the origins of the associations between time, speed and technology in Western society. I articulate an alternative understanding of technology as relational, grounded in the needs and lived experience of those who work in and use libraries. I draw from several emerging concepts, including Slow Librarianship, feminist ethics of …

Feasibility, Acceptability, And Preliminary Efficacy Of A Pilot Study To Integrate Buprenorphine Into A Harm-Reduction Drop-In-Center In Kampala, Uganda, Julia Dickson-Gomez, Sergey Tarima, Wamala Twaibu, Dan Katende, Latifah Kyeswa, Laura Glasman, Arthur Kiconco, Sarah Krechel, Bryan Johnston, Moses Ogwal, Brian Byamah Mutamba, Peter Mudiope, Stella Alamo, Rhoda Wanyenze, Geofrey Musinguzi

Biostatistics Faculty Publications

Illicit drug use has been increasing rapidly in Sub-Saharan Africa in the past decade. However, until recently HIV prevention has largely ignored people who inject drugs and medications to treat opioid use disorder (MOUD) were largely absent. This paper reports results of a pilot intervention that integrated buprenorphine into a harm-reduction drop-in-center for people with opioid use disorder (OUD) in Kampala, Uganda. We collected implementation outcomes and changes in self-reported drug use after buprenorphine initiation. We conducted qualitative interviews with a subset of 14 participants who had initiated buprenorphine. Sixty-two participants were screened for OUD, of whom 57 were eligible …

Artificial Intelligence In Biomedical Team Science: Perceptions, Practices, And Training Needs, Emily Slade, Kelsey N. Karnik, Caitline Phan, Megan E. Hall, Yana Feygin, Kristen J. Mcquerry

Biostatistics Faculty Publications

Introduction: Artificial intelligence (AI) is increasingly used in biomedical research, yet limited empirical work has described how researchers use AI tools on collaborative research teams and how they view their role within team-based research. This study examines researchers’ experience with and attitudes toward AI use in collaborative research environments.

Methods: A cross-sectional survey was administered to 178 investigators engaged in collaborative research at the University of Kentucky. Questions assessed AI use across research and communication tasks, team-related decision-making practices, perceived benefits and concerns, and preferences for training and frameworks.

Results: Thirty-nine participants responded (22%). AI use was heterogeneous: 26% had …

Outdoor Recreation And Well-Being: The Effects Of Outdoor Activity From A Positive Psychology Approach, Sophia Watson

Honors Program Theses

Outdoor recreation has been associated with increased well-being in past literature (et al., 2018). This study focuses on well-being from a positive psychology perspective (i.e., flourishing, fulfillment, life satisfaction, etc.). Spending time in nature may increase well-being, due to its sensory properties which reduce stress and rumination (Kaplan, 1995). Physical activity may also be important for well-being due to its health benefits, neurotransmitter release, opportunities for socialization, and increasing self-confidence (Parlakyıldız, 2025). I investigated whether there was correlation between outdoor recreation and well-being and if so, whether it differed depending on the location of the activity and the physical activity …

Taking Up Space: A Love Letter To Healing, Heartbreak, And Hairspray, Hailee Amerson

Honors Program Theses

An Honors Thesis disguised as a one-woman show, "Taking Up Space: A Love Letter to Healing, Heartbreak, and Hairspray" is a cabaret revue-style performance. Through original monologues, and songs from the musical theatre canon, this cabaret takes audiences through where plus-size women fit (or do not fit) in the theatre industry. The piece takes a sociological perspective, beginning with the history of beauty and health standards, while asking audiences to confront their own views on what it means to be "fat". Interspersed through the show is my own story of growing up fat in an industry where thin is “in”, …

The Hollow Parent: A Philosophical Capabilities-Based Care Ethics Critique Of The U.S. Foster Care System, Lindsey E. Scanlan

Honors Program Theses

This thesis argues that the U.S. foster care system systematically undermines transition-age youth by failing to secure the capabilities required for genuine independence and a life of basic human dignity, particularly through aging-out policies that terminate support before these capabilities are fully developed. Using Martha Nussbaum’s capabilities approach as a normative foundation, it integrates classical American pragmatism (Jane Addams, John Dewey) and Maurice Hamington's contemporary care ethics to construct a context-sensitive framework for evaluating and reforming foster care. Pragmatism grounds normative assessment in lived experience and institutional context, while care ethics provides a relational account of moral practice structured around …

Res Publica Recondita: Augustan Authors’ Use Of Archaic Heroes As Exempla For The Golden Age, Katherine Anna Hamner

Honors Program Theses

Following decades of civil war and moral collapse in the Late Republic, Augustus sought to legitimate his principate through a sweeping cultural program proclaiming the arrival of a new Golden Age. This thesis examines how the authors Livy and Virgil contributed a literary dimension to that program by retelling Rome's archaic past. Livy curates the Roman kings as exempla of entrepreneurial virtue and civic self-determination, while Virgil's Aeneid grounds proto-Roman identity in pietas and coalition-building across ethnic boundaries. Both works, independent of direct state commission, answered the moral demands of the Augustan moment and affirmed that civilizational renewal requires a …

Trade-Offs In Sustainable Building Design: A Visual Study Of Daylighting, Quality Viewpoints And Energy Efficiency, Paula Cabanas

Honors Program Theses

This thesis explores the trade-offs between daylighting, quality viewpoints, and energy efficiency in sustainable architectural design. The initial goal of the project was to determine if there was a single building design that would optimize the trade-offs between these three design elements. Three buildings on the Rollins College campus were selected as case study sites for detailed analysis (Bush Science Center, Kathleen W. Rollins Hall, and the Rice Family Pavilion). Rollins College was chosen as the primary location for this study because of its accessible public buildings and consistent Mediterranean revival architectural style. Analysis of each building’s design and composition …

Our Clients’ Rights On Mute: Virtual Court, Due Process, And Judicial Discretion, Beena I. Ahmad, Julia Elhai

City University of New York Law Review

The use of videoconferencing as a substitute for in-person appearances began in immigration proceedings in the mid-1990s. During the height of the COVID-19 pandemic, its use expanded significantly in the criminal and civil contexts, when both state and federal courts invested heavily in the technology needed to conduct proceedings remotely. As we have exited the pandemic, courts have eagerly embraced virtual proceedings to reduce their overburdened dockets. Drawing from our experiences in federal and state court, we argue that judges should not be granted discretion to proceed by videoconferencing.

We posit that there is too great a danger that the …

The Architecture Of U.S. Fascism: Part Ii, Nina Farnia

City University of New York Law Review

In Part I of this series, I argued that the United States has always already been proto-fascist, but that today it is undergoing a transition into formal, de jure fascism. This transition is the result of a change in the class nature of the state itself.

In Part II, I focus on the legal architecture of fascism. I expose rule-of-law liberalism as having paved U.S. fascism’s path. I note the pernicious role of the law in class wars, race wars, gender wars, and global wars, with particular attention on the making of a total state. I then challenge the notion …

Popliteus Interposition In Metaphyseal Tibial Fractures: The Radiographic Clues That Cannot Be Missed, Lucca Gontijo Giarola, Paulo De Tarso Cardoso Gomes, Robinson Esteves Dos Santos Pires, Guilherme Moreira Abreu E Silva, Marco Antônio Percope De Andrade, Túlio Vinícius De Oliveira Campos

Western Journal of Orthopaedics

High-energy proximal tibia fractures present significant challenges for orthopaedic surgeons, with well-recognized risks including malreduction and nonunion. Although double plating through two mini-open parallel incisions is an established technique for selected patients, nonuion can still occur. One potential contributing factor is entrapment of the popliteus muscle within the distal spike of the posteromedial plateau fragment. This report uses illustrative cases to demonstrate how to identify, address, and prevent this complication. Strategies for managing delayed cases that progress to nonunion are also discussed

Biochemical Investigations Of F420-Dependent Glucose-6-Phosphate Dehydrogenase From Cryptosporangium Arvum, Sarah T. Al-Noubani

2026 Spring Honors Capstones Projects

F₄₂₀-dependent glucose-6-phosphate dehydrogenase (FGD) catalyzes the conversion of glucose-6-phosphate to 6-phosphogluconolactone using the deazaflavin, Cofactor F₄₂₀. FGD from Mycobacterium tuberculosis has been investigated due to its health relevance to prodrug activation. More recently, FGD from Cryptosporangium arvum (Cryar- FGD) has been investigated due to its broader substrate specificity toward multiple sugar phosphates. Kinetic and NMR studies have shown that Cryar-FGD has dual catalytic activity as a dehydrogenase and isomerase. Further investigations are being conducted on Cryar-FGD to characterize key residues involved in catalysis.

To investigate the catalytically active residues of Cryar-FGD, …

Bursty Bulk Flows: The What, The Why, And Their Impacts On The Earth, Fariza Tanvir

2026 Spring Honors Capstones Projects

Due to solar wind-magnetosphere interactions, the Earth's magnetic field lines stretch into a long, comet-shaped magnetotail, which extends thousands of miles away from the Earth. Bursty Bulk Flows (BBFs) are transient, high-speed ion bulk flows in the magnetotail that play an essential role in energy and mass transport. Characterized by their short-lived duration, they are related to magnetic reconnection events. This investigation focuses on being able to identify BBFs using the Magnetospheric Multiscale (MMS) probes, a mission consisting of four probes arranged in a tetrahedron to study the Earth’s magnetosphere. We examine parameters such as energy spectra, spin bulk velocity, …

Socioeconomic Influences On Doula Access And Perceived Care Quality Among Black Women Experiencing Severe Maternal Morbidity, Deborah Esene

2026 Spring Honors Capstones Projects

Black women experience disproportionately high rates of maternal morbidity and mortality, making it essential to examine access to and the perceived impact of doula support. This study examines whether socioeconomic status influences access to and the perceived benefits of doula support among Black women who experienced severe maternal morbidity (SMM). Researchers surveyed Black women ages 18-49 who had a live birth within the past two years and experienced SMM. Participants were recruited and completed an online survey in late 2020. Key variables included income, education, doula use, and perceived quality of prenatal, intrapartum, and postpartum care. Among 188 participants, 12.2% …

The Machine And The Masses: A Sociolinguistic Study Of Ai Political Rhetoric, Yaseen Tasnif

2026 Spring Honors Capstones Projects

With increased use of and access to generative Artificial Intelligence, or AI, political communications have begun to see its influence, leading to the question of how this AI generated political rhetoric is received. In previous research, AI output has been extensively researched and indexed, highlighting specific qualities such as overly polished speech as indicators of use. Research has also been done on perception and detectability of AI, showing that people can accurately identify AI-generated text, but tend to be overconfident. However, such research has not been done in the context of political rhetoric, which is consumed in different ways than …

Color-Blind Resilience: How Uniform Climate Standards Reproduce Environmental Inequality In The Rockaways, Aaryan M. Nair

Publications and Research

This paper examines how ostensibly uniform climate resilience standards can reproduce environmental inequality in socially uneven landscapes, using the Rockaway Peninsula in New York City as a critical case study. While flood-resistant building codes, zoning regulations, and insurance frameworks are designed to provide equal protection across flood-prone areas, this analysis argues that their “color-blind” application obscures and intensifies underlying disparities in financial capacity, housing conditions, and tenure. Drawing on environmental justice (EJ) theory, the paper identifies two key mechanisms through which inequality is reproduced. First, “code without capacity” demonstrates how uniform technical standards—such as elevation requirements under NYC Building Code …

Development And Evaluation Of A Modular 3-D Printed Adapter For Hands-Free Tissue Retraction, Fady E. Attia, Vijay A. Chhabra, Vaibhav Tadepalli,, Joseph Attia, Michael M. Hadeed

Stony Brook Orthopaedic and Musculoskeletal Journal

Fracture fixation procedures typically require precise retraction of soft tissues in order to provide adequate exposure of bone fragments for reduction and fixation. Such procedures require the use of multiple surgical assistants to maintain proper tissue retraction. This manual retraction using traditional instruments, such as Hohmann and Weitlaner retractors, can lead to inefficiencies and poor labor allocation within the operating room (OR). The purpose therefore is to develop and evaluate a three dimensional (3D)-printed Nylon PA12 adapter designed to dock Hohmann retractors onto Weitlaner retractors, enabling hands-free retraction during fracture fixation procedures and potentially improving labor allocation in the OR. …