Digital Commons Network^™

Investigating The Impact Of Climate Change On Physical And Chemical Hydrology Of A Michigan Wetland, Emmalynn Boulton

Senior Honors Theses and Projects

Wetlands support biodiversity, regulate water cycles, and sustain ecological health. Understanding their functions and the relative contributions of groundwater and precipitation are key to conserving these ecosystems effectively, especially under changing climate conditions. Fish Lake Environmental Education Center (FLEEC) is 240 acres of diverse, glacially-influenced wetlands located near Lapeer, Michigan. This site encompasses a bog consisting of sphagnum moss and peat underlain by clay, as well as many glacial kettles that form ephemeral vernal pools during periods of frequent precipitation. Previous studies have shown that groundwater flows from the north to the southeast, from the bog towards Fish Lake. The …

Integrating Computational Modeling And Experimental Analysis To Characterize Autophagosome Size And Number., Rakan A. Alnsour

Senior Honors Theses and Projects

Autophagy is a key cellular recycling process that helps cells maintain homeostasis and survive stress by breaking down damaged organelles and misfolded proteins. When autophagy is disrupted, it contributes to diseases such as cancer, Parkinson’s disease, and Alzheimer’s disease, so getting accurate measurements of autophagosome size and number is important for understanding how this pathway works. In this project, we are working on improving a computational model in CompuCell3D that simulates how autophagic bodies clump inside the yeast vacuole, which we later compare to real transmission electron microscopy images. We generated starting files with defined body numbers and sizes, simulated …

Applied Machine Learning In Mineral Prospectivity Mapping In The South Pass-Granite Mountains Of Wyoming, Carl D. York

Graduate Theses/Dissertations

The South Pass-Granite Mountains, comprised of Archean to Tertiary rocks embedded with an Archean greenstone belt in Central Wyoming, have historically been mined for gold, iron, steel, and silver. Rare earth elements have been of increasing interest in the region and thus, several datasets have become available. Knowledge driven and data driven models are used in mineral prospectivity mapping with input data including geological mapping, geochemical data, geophysical (USGS Critical Mineral magnetic and gravity data), radiometric (U, Th, K) data and multispectral remote sensing data. Mineral prospectivity has seen a rapid improvement in recent years using advancements in machine learning …

Genomic Signatures Of Decline And Recovery In An Endangered Bat, Myotis Grisescens, Marxe Altman-Orbach

Graduate Theses/Dissertations

Tremendous population declines may result in the loss of genetic diversity, which can, in turn, lead to reduced adaptive potential, overexpression of deleterious phenotypes, and further population declines. In this way, genetic drift from a severe demographic decline may ultimately lead to an extinction vortex. However, populations that avoid the loss of genetic diversity may remain viable, despite demographic crashes. Therefore, understanding genetic diversity is vital for assessing the conservation status of species that have undergone declines, and can even reflect the effectiveness of management actions. I investigated signatures of genetic bottlenecks in the gray bat (Myotis grisescens), …

Gene Editing And The Accessibility Of Bioterrorism: Rethinking Global Biosecurity In The Post-Covid-19 Era, Nicholas Morales

Graduate Theses/Dissertations

COVID‑19 demonstrated how a single biological event can strain health systems, disrupt supply chains, undermine national security, and erode public trust. This shock occurred as biotechnology became dramatically more accessible: gene editing and synthetic biology tools once limited to specialized laboratories are now widely available through inexpensive equipment, open‑source data, and decentralized expertise.

This expanded access accelerates innovation but also broadens the threat landscape. The ability to reconstruct pathogens using publicly available sequences and mail‑order DNA shows that complex biological synthesis is no longer confined to state programs. These risks are amplified by opaque biotechnology activities in China, Russia, and …

Using 1:1 Behavior-Analytic Instruction To Enhance Outcomes Of A Social-Emotional Learning Curriculum: A Retrospective Single-Case Clinical Evaluation, Cierra Vandermeer

Graduate Theses/Dissertations

Social-Emotional Learning (SEL) is the process through which people acquire and apply skills to manage emotions, form relationships, make responsible decisions, and pursue personal and shared goals, and these competencies shape identity development and daily functioning (Collaborative for Academic, Social, and Emotional Learning [CASEL], 2020). While there are many SEL programs and curricula that exist for school-aged children, there are few curricula that a) have a focus on 1:1 instruction for preschool to primary-aged children, and b) integrate and incorporate Applied Behavior Analysis (ABA) principles. This thesis reviewed a retrospective case study of a six-year-old female-identifying student who participated in …

Incremental Cluster Validity Indices And Their Role In Interpreting Lifelong Learning Systems, Niklas Max Melton

Doctoral Dissertations

Clustering and supervised learning are often treated as distinct paradigms, yet both rely on structure in feature space. This dissertation investigates the relationship between cluster validity indices (CVIs) and supervised learning in real-time and lifelong learning settings where data arrive incrementally and cannot be revisited. Across four studies, it develops methods for online cluster validation, uses supervised learning to improve their interpretability, and applies these ideas to evaluating performance degradation in continual learning.

The first study extends incremental cluster validity indices (iCVIs), enabling widely used validation metrics to operate in streaming environments. Experiments on synthetic and real-world datasets show systematic …

Architecting A Complex Adaptive System Model For Selecting Policies To Reduce Kidney Discard, Lirim Ashiku

Doctoral Dissertations

"The kidney allocation system is a complex, evolving system involving multiple heterogeneous agents. Each agent exhibits emergent behavior that may not fully align with the complex system goals. Therefore, there is a need for a transdisciplinary systems approach to visualize the interdependency among agents and understand the dominant patterns that shape the kidney allocation system.

First, this research presented an incremental hierarchical system engineering approach in identifying the agents’ needs and behaviors toward the complex systems’ goal of maximizing deceased donor kidney utilization and reducing kidney discard. The hierarchical systems approach linked with model-based system engineering aided in eliciting agents’ …

Specialty Glass Fibers For Optical Applications, Theodore Carver Lewis

Masters Theses

"Fibers were draw from melts of a commercial Na-aluminosilicate for ion-exchange treatments. A process was developed to draw 100-meters of fiber with a diameter of 100±10m. The fibers were sectioned for ion exchange treatments. SEM analysis showed an ion penetration depth of 45um after 4 hours of ion exchange in a 400°C KNO3 salt bath. The pristine and ion-exchanged fibers were characterized by a two-point bend test in room temperature air with controlled relative humidity (RH) and faceplate velocities between 100 and 4000 μm/s to characterize fatigue effects. Pristine fibers tested in air (40% RH) at 4000 μm/s had failure …

Investigating The Dynamic Rating Method: Effects Of Flood Wave Geometry On Discharge Estimation, Daniel James Read

Masters Theses

Rating curves are a vital tool to convert from observed stage to discharge in streamflow monitoring. Most gaging sites utilize a simple rating curve, which assumes a monotonic relationship between stage and discharge. In most cases, this assumption is valid; however, dynamic effects of flood waves often cause significant error in discharge estimation for mildly sloped streams. The dynamic rating method utilizes a numerical solution of the St. Venant Equations applied to time series stage data to compute discharge. Within this method, there is a flood wave parameter called the flood wave factor. The researchers designed a formal computational model …

Validating A Low-Cost Radio Frequency Characterization Framework For Development-Grade Software-Defined Radios In Short-Duration Cubesat Missions, Thomas Wayne Francois

Masters Theses

Software-defined radios (SDRs) and CubeSat platforms have reduced the cost and complexity of space-based communication systems, enabling broader participation in satellite missions. While low-cost radio hardware is increasingly accessible, the ability to characterize and validate its performance remains constrained by the high cost and limited access to traditional RF test equipment. This disparity creates a challenge for small satellite development teams, which must characterize communication-system technical performance with limited access to laboratory-grade instrumentation.

This thesis presents a low-cost RF characterization framework for assessing key radio-frequency performance metrics using readily available hardware and measurement techniques. The approach integrates frequency translation, SDR-based …

The Occurence Of Expansive Clay Soils In Illinois And Their Effects On Shallow Lightly Loaded Foundations, Greg James Gollaher

Masters Theses

"The damage caused to shallow foundations and slabs on grade by the shrink-swell activity of clay soils is well documented across the United States. There are local and national resources available that delineate areas that are problematic and areas that are not. These resources paint Illinois as an undemanding foundation environment. However, our experience differs from this. Our experience tells us that damage related to the shrink-swell activity of clay soils is widespread, and commonly severe causing not only cosmetic damage to structures and hard improvements but also affecting the serviceability and longevity of structures. My goal is to accurately …

Divergent Genetic Architecture Of Cold Stress Tolerance In Aus And Tropical Japonica Rice, Georgia C. Eizenga, Yami Santamaria, Aaron K. Jackson, Huy Phan, Melissa H. Jia, Quynh P.-H. Grunden, Jeremy D. Edwards, Ed Himelblau, Michael Schläppi

Biological Sciences Faculty Research and Publications

Introduction: 

Exploring natural genetic variation to facilitate breeding of improved rice seedling cold tolerance will allow the crop to be planted earlier in the growing season, taking advantage of spring rainfall and decreasing exposure to high summer nighttime temperatures, which reduce grain quality.

Methods: 

To uncover genomic regions in rice that manage cold stress tolerance response mechanisms in the cold-sensitive aus (AUS) and the relatively cold-tolerant tropical japonica (TRJ) subpopulations, and to identify cold tolerance genes, AUS and TRJ recombinant inbred line populations developed from crosses between cold-tolerant and cold-sensitive parents were used for quantitative trait locus (QTL) mapping of …

2027 Citizenship Washington Focus (Cwf) @Ignite Application, Kendra Lewis, Kendra Lewis

UNH Cooperative Extension

No abstract provided.

When Speech Speaks Louder Than Truth: Language Variation And Credibility In The Courtroom, Melanie E. Spinnie

Graduate Theses/Dissertations

This study aims to investigate how linguistic variation affects perceptions of credibility in courtroom settings. It focuses on how jurors, judges, and other individuals in the legal system may exhibit bias (consciously or unconsciously) based on how a defendant or witness speaks-- this could include speech disorders as well as differences in dialect, accent, and speech style. Through review of relevant literature, review of a relevant historical case, conducting a survey, and conducting a semi-structured interview, this study explores whether certain speech patterns or characteristics are disproportionately associated with negative judgments during legal proceedings, such as reduced credibility and trustworthiness. …

Experimental Diegetic Thresholds: A Study Of Adapted Carceral Narratives [The] Nickel Boys And Sing Sing, Leslie D. Muench

Graduate Theses/Dissertations

The diegesis is the storyworld of a film, including all the characters, settings, events, and other elements. At certain times, though, that threshold is permeable, particularly when the fictional source material involves lived experiences. Two carceral films model an experimentation with adapted material and the palimpsestuous layering effect that is a result of real-life narratives being transposed into fictional ones. Nickel Boys, directed by RaMell Ross (2024), and Sing Sing, directed by Greg Kwedar (2023), endeavor to humanize a stereotypically ostracized community: Black boys and men who are incarcerated. Through the screenwriting, casting, producing, filming, and sharing of their films …

The Ones Who Watched: Technology, Proxy Warfare, And The Testing Ground Hypothesis, Sean J. Oliver

Graduate Theses/Dissertations

Great powers need laboratories for war. This thesis argues that great powers find these laboratories in proxy forces. Proxy warfare is not just a tool for strategic influence. It is a machine for experimentation. This study posits a central testing-ground hypothesis. It contends that great powers deliberately use surrogates to vet emerging technologies, doctrines, and mobilization schemes under the pressure of real combat. The analytical methodology is historical. It traces patterns from the ancient world's proxy forces and the innovations of the Crusades to the Cold War and the digital age. The thesis examines enduring patterns, including the tension between …

Exploring Factors Mediating White-Nose Syndrome In Little Brown Bats, Carly R. Trujillo

Graduate Theses/Dissertations

The little brown bat (Myotis lucifugus) has experienced drastic population declines across North America due to the recent disease white-nose syndrome (WNS). Previous studies have identified putatively adaptive alleles (PAAs) that may give individuals a greater likelihood of survival. However, there could be geographic-specific adaptation, creating different adaptive landscapes. Additionally, there may be energetic trade-offs between disease survival and reproductive output, and it is not clear what the long-term survival outcomes for the species may be as a result. Long-term evolutionary outcomes are unclear because this species has a lifespan exceeding the arrival of WNS and is difficult …

Corpus Meum, Mea Electio, Kara L. Coonrod

Graduate Theses/Dissertations

The right to bodily autonomy and reproductive freedom is something I hold very close to my heart. Women who did not wish to embrace motherhood, or who grew beyond the walls of the hearth and home, have been far more often persecuted than praised. Over the past two years, I have created artwork borrowing the visual and material language of the Catholic church (along with personally relevant folklore) to elevate my freedom of choice and bodily autonomy in the face of religiously driven political oppression. Using a less frequently referenced organ from my reproductive system to represent my struggle against …

The Effect Of Sex On A-To-I Editing In Skeletal Muscle During Inflammation, Skyler Lee

Graduate Theses/Dissertations

Adenosine-to-inosine (A-to-I) RNA editing is a post-transcriptional mechanism mediated by ADAR enzymes that can alter RNA sequence, protein function, and gene regulation. Because ADAR1 is upregulated during inflammation and plays a critical role in innate immunity, previous studies investigated the effects of acute inflammation on RNA editing in male and female mice. Lipopolysaccharide (LPS) was used to induce inflammation, and RNA editing levels were examined in the heart, brain, and skeletal muscle. While editing levels in the heart and brain remained unchanged, skeletal muscle exhibited tissue- and sex-specific differences in editing. In this thesis, LPS treatment affected selective editing, increasing …

Climate Change In Gilgit-Baltistan: Satellite-Based Land Use/Land Cover Change Detection, Socio-Economic Dimensions, And Adaptation Strategies, Ali Muhammad

Graduate Theses/Dissertations

Climate change is increasingly transforming the cryosphere, hydrology, and human landscape of Gilgit-Baltistan, a highly climate-sensitive mountain region in northern Pakistan. This thesis investigates these transformations through satellite-based land use/land cover (LULC) change detection in four representative tehsils of Gilgit-Baltistan—Ali Abad, Gilgit, Nagar, and Sikander Abad—selected to span a gradient of human pressure and cryospheric exposure within the region. Using summer, cloud-free (< 10%) imagery from USGS Landsat 7 (2000) and Landsat 8 (2025), it conducts a multi-temporal comparison of environmental and socio-spatial change. After atmospheric correction and band compositing, the imagery is classified in ArcGIS Pro into six classes—Water, Barren land, Vegetation, Snow, Glacier, and Built-up—using a Support Vector Machine (SVM) classifier, with Maximum Likelihood Classification and Random Forest also tested but found less suitable for the final workflow. The analysis detects a pronounced reduction in mapped glacier-class area alongside a comparatively stable snow class, together with built-up expansion, while examining how temperature, precipitation, tourism, and population dynamics relate to observed LULC transitions. The results reveal a pattern of cryospheric decline and urban growth, with implications for water availability, ecological stability, hazard exposure, and settlement pressure. By integrating geospatial change detection with climatic and socio-economic interpretation, the thesis moves beyond mapping to explain interacting environmental and human drivers of landscape transformation and provides a reproducible remote-sensing baseline for monitoring land-surface change in heterogeneous mountainous terrain. It recommends integrated water-resource management, climate-resilient land-use planning, watershed and glacier monitoring, and sustainable tourism governance, supporting evidence-based decision-making by the Government of Gilgit-Baltistan and organizations working on climate adaptation, disaster risk reduction, and sustainable regional development.

Heterogeneous Robots Cooperation Via Multi-Agent Reinforcement Learning, Rehab Uddin Shawon

Graduate Theses/Dissertations

Enabling heterogeneous robots with diverse capabilities, roles, and task responsibilities to coordinate effectively in complex, dynamic environments remains a fundamental challenge in autonomous multi-robot systems. Multi-Agent Reinforcement Learning (MARL) provides a promising framework for decentralized cooperation. However, most existing MARL approaches assume homogeneous agents or fixed single-task settings and suffer significant performance degradation as the number of robot and task types increases. This thesis presents a scalable shared-policy MARL framework that allows heterogeneous robots to learn specialized behaviors for individual, sequential, and collaborative tasks involving temporal and spatial dependencies through a single neural policy. I first embed robot identity directly …

Advancing Hate Speech Detection: Binary And Multiclass Approaches From Traditional Methods To Parameter-Efficient And Ontology-Guided Language Models, Mahmoud Abusaqer

Graduate Theses/Dissertations

The widespread proliferation of hate speech on social media platforms poses significant challenges for content moderation and user safety, requiring automated systems that are simultaneously accurate, efficient, and capable of fine-grained distinctions. This thesis investigates hate speech detection through five published manuscripts organized into two complementary threads: binary detection (hateful vs. non-hateful) and multiclass detection across demographic targeting categories. The binary thread progresses from a broad 38-model baseline spanning traditional machine learning, deep learning, and transformer architectures (where RoBERTa reaches 91.48% accuracy and CatBoost remains competitive at 88.60%) to parameter-efficient adaptation, in which Low-Rank Adaptation (LoRA) of large language models …

Development And Validation Of The Ipip-Ocean: A Hierarchical Facet-Level Measure Of The Big Five, Caleb Niccum

Graduate Theses/Dissertations

This study focused on developing a mid-range, hierarchical, five-factor, 20-facet personality inventory (the IPIP-OCEAN) composed of 100 items drawn from both the IPIP-NEO-300 and the Abridged Big Five Circumplex. Hierarchical confirmatory factor analysis was used to validate the factor structure. Depression and anxiety, measured with the PHQ-9 and GAD-7, were used to further validate the measure through discriminant and convergent validity by examining whether the domains and facets of the IPIP-OCEAN produced findings consistent with those reported for similar scales in prior depression and anxiety research. Numerous factor analyses were conducted on the IPIP-OCEAN dataset (N = 1,058), and a …

Remediation Impacts Metal Concentrations And Metal Tolerant Bacteria In Soils Of The Missouri Tri-State Mining District, Ophelia R. Pettington

Graduate Theses/Dissertations

After over 100 years of Zn and Pb mining in the Tri-State mining district (TSMD), former mines continue to be sources of metals. Metal contaminated soils can be remediated using plant-microbe interactions. Plants manipulate their microbiome and recruit microbes to increase metal tolerance. Remediating bacteria are site-specific and identifying native microbes can accelerate remediation efforts. Studies relating microbes and metal concentrations in remediated areas in the TSMD are scarce. I collected root and bulk zone soils associated with Andropogon virginicus from remediated and non-remediated sites in Webb City, MO. I used 16S rRNA gene amplicon sequencing to evaluate the bacterial …

Synthesis And Characterization Of The New G3 Family Of Organoantimony(V) Cyanoximates, Thao Trang Phan

Graduate Theses/Dissertations

Bacterial infections pose a serious threat to humans by developing resistance, rendering antibiotics ineffective. Of the 12 antibiotics recently approved since 2017, 10 belong to an already existing class. Various resistance mechanisms, such as reduced drug uptake, active efflux, drug inactivation, and target modification, can significantly reduce the efficacy of entire classes of antibiotics. Discovering novel strategies to overcome diverse mechanisms of resistance and improve therapeutic efficacy is in high demand. Inorganic compounds with organic ligands (both complexes and organometallics) represent a new class of compounds against which antimicrobial resistance has not yet been established. Recently, we discovered two series …

Adapting To Uncertainty: Effects Of Environmental Instability On Zebrafish Behaviour, Britney Sekulovski

Theses and Dissertations (Comprehensive)

This thesis addresses how animals cope with unpredictability by testing how environmental stability changes the behaviour of zebrafish (Danio rerio) in two complementary experiments. In Experiment 1, fish lived for three months in either a Dynamic environment (water temperature, feeding times, habitat complexity, group size, and membership fluctuated) or a Stable environment (all factors constant). Across seven behavioural assays, measuring individual behavioural differences, collective movement, social memory, and information use, Dynamic condition fish were found to be more sensitive to social cues and more likely to conform to recent social information, independent of the quality of the information …

Minority Stress And Drug Use Among 2slgbtq+ Canadians, Robert Chin-See, Todd Coleman

Theses and Dissertations (Comprehensive)

Background: Several social and environmental factors influence drug use behaviors and contribute to frequent drug use among Two-Spirit, Lesbian, Gay, Bisexual, Transgender, Queer, and other (2SLGBTQ+) individuals. The purpose of the current study was to examine the relationship between the minority stress, drug use, and other socio-ecological factors.

Methods: This study employed structural equation modelling on data (2021—2022) from a nationally representative pan-Canadian survey (N = 1542) on 2SLGBTQ+ health to examine the association between minority stress, drug use, and relevant socio-ecological predictors. A separate mediation analysis was conducted and controlled for socio-demographic characteristics.

Results: SEM results showed parsimonious fit …

Exploring Parent-Child Reminiscing Style And Internal-State Talk When Discussing Positive And Negative Shared Events, Komal Verma Miss.

Theses and Dissertations (Comprehensive)

Conversations between parents and children about past events play a critical role in children’s social, emotional, and cognitive development. Parents scaffold their children in learning to recount details of their autobiographical memories by creating a space to reflect on internal states, specifically emotions and cognitions. Parents with an ‘elaborative’ reminiscing style are responsive to children’s utterances and ask open-ended questions (e.g., What do you remember about...?). Parents who are less ‘elaborative’ typically ask narrow questions like Did you like it?” that do not encourage conversation. Children whose parents use an elaborative reminiscing style have children who produce the most detailed …

Variables Related To School Readiness Among Canadian Children With Attention Deficit Hyperactivity Disorder Symptomology, Carlye Brokl

Theses and Dissertations (Comprehensive)

Children with attention deficit hyperactivity disorder (ADHD) symptoms face challenges academically, behaviourally, and socioemotionally at entry to formal education. Yet, these symptoms are rarely investigated prior to school entry, reducing the time that parents can prepare by learning about the disorder, scaffolding their children’s skills, and mediating the risk of long-lasting consequences related to unpreparedness for school. Within the current study, we aimed to uncover specific skills and elements within children’s environments which may be targeted for intervention prior to entering formal education. More specifically, we examined the relationship between the home literacy environment (HLE), mental-state understanding, ADHD symptomology, and …