Digital Commons Network^™

Rapid Identification Of Drug Resistance Of Escherichia Coli Based On Electrochemical Square Wave Voltammetry Of Resazurin, Qi Chuchu, Lu Lisheng, Ren Jiali, Zhou Kai, Zhang Xinfang, Zhang Ziying

Food and Machinery

Objective: To evaluate the antibiotic resistance of five foodborne Escherichia coli clinical isolates to ciprofloxacin, gentamicin and ampicillin. Methods: Based on the theory of electron transfer during bacterial energy metabolism and the introduction of resazurin as a redox probe, an electrochemical square wave voltammetry （SWV） method based on bladed tensin-mediated rapid identification of E. coli drug resistance was established. Results: The electrochemical square wave voltammetry values of E. coli at different concentrations mediated by resazurin were determined, and there was a good linear relationship between the E. coli concentration and the oxidized peak current （I） of resazurin in …

Nanobodies In The Fight Against Infectious Diseases: Repurposing Nature's Tiny Weapons, Dina Mohamed Moustafa, Soha S. Rizk, Shahira A. Elbanna, Hanzada Tawfik Nour El-Din, Ahmed Sherif Attia

Dentistry

Nanobodies are the smallest known antigen-binding molecules to date. Their small size, good tissue penetration, high stability and solubility, ease of expression, refolding ability, and negligible immunogenicity in the human body have granted them excellence over conventional antibodies. Those exceptional attributes of nanobodies make them promising candidates for various applications in biotechnology, medicine, protein engineering, structural biology, food, and agriculture. This review presents an overview of their structure, development methods, advantages, possible challenges, and applications with special emphasis on infectious diseases-related ones. A showcase of how nanobodies can be harnessed for applications including neutralization of viruses and combating antibiotic-resistant bacteria …

Conference Speaker Bios, Dusty Layton, Angela Williams

Conference Documents

No abstract provided.

Rabies Management In The North, A One Health Problem In A Systems Theory Framework, Karsten Hueffer

Arctic and Northern Studies

Rabies is a significant public health concern and is often described as the quintessential One Health problem, linking especially animal health to human health. I examine how rabies is managed in the circumpolar North with three cases: Alaska, Northwest Territories, and Svalbard. In this thesis, I describe rabies management in the North using a systems theory framework and explore challenges in this limited application of the One Health paradigm, focusing on animal and human health agencies and their interaction in rabies management in a northern environment. I conducted semi-structured interviews with fifteen key informants. My results indicate that most respondents …

In Vitro And In Vivo Burn Healing Study Of Standardized Propolis: Unveiling Its Antibacterial, Antioxidant And Anti-Inflammatory Actions In Relation To Its Phytochemical Profiling, Dina M. El-Kersh, Rania F. Abou El-Ezz, Eman Ramadan, Reham F. El-Kased

Pharmacy

Background

Natural propolis has been used since decades owing to its broad-spectrum activities. Burn injuries are a global health problem with negative impacts on communities. Bacterial infections usually accompany burns, which demand implementation of antibiotics. Antibiotics abuse led to emergence of microbial drug resistance resulting in poor treatment outcomes. In such instances, the promising alternative would be natural antimicrobials such as propolis.

Objective

Full chemical profiling of propolis and evaluation of in vitro antibacterial, antioxidant and anti-inflammatory activities as well as in vivo burn healing properties.

Methods

Chemical profiling of propolis was performed using Liquid chromatography (UHPLC/MS-PDA and HPLC-PDA). In …

Unrestricted Versus Regulated Open Data Governance: A Bibliometric Comparison Of Sars-Cov-2 Nucleotide Sequence Databases, Nathanael Sheehan, Federico Botta, Sabina Leonelli

Copyright, Fair Use, Scholarly Communication, etc.

Two distinct modes of data governance have emerged in accessing and reusing viral data pertaining to COVID-19: an unrestricted model, espoused by data repositories part of the International Nucleotide Sequence Database Collaboration and a regulated model promoted by the Global Initiative on Sharing All Influenza data. In this paper, we focus on publications mentioning either infrastructure in the period between January 2020 and January 2023, thus capturing a period of acute response to the COVID-19 pandemic. Through a variety of bibliometric and network science methods, we compare the extent to which either data infrastructure facilitated collaboration from different countries around …

Characterizing The Expression Of The Sphingosine 1-Phosphate Pathway In Injury And Post-Traumatic Fibrosis, Nicole Cubbage

Masters Theses, 2020-current

Following injury, tissue repair allows for the restoration of the architecture and function of the injured tissue, while tissue replacement is characterized by severely damaged or non-regenerable tissue that is repaired by the laying down of extensive connective tissue, also known as fibrosis. The fibrotic process should be arrested at its early stage to have the greatest impact on preventing or reversing associate sequelae and promoting the regeneration of normal tissue. Sphingosine 1-phosphate (S1P), a metabolic product of cell membrane sphingolipids, has emerged as a pathway that may be involved in fibrosis. Most of S1P’s actions are mediated through the …

Updates To The Alliance Of Genome Resources Central Infrastructure., The Alliance Of Genome Resources Consortium

Faculty Research 2024

The Alliance of Genome Resources (Alliance) is an extensible coalition of knowledgebases focused on the genetics and genomics of intensively studied model organisms. The Alliance is organized as individual knowledge centers with strong connections to their research communities and a centralized software infrastructure, discussed here. Model organisms currently represented in the Alliance are budding yeast, Caenorhabditis elegans, Drosophila, zebrafish, frog, laboratory mouse, laboratory rat, and the Gene Ontology Consortium. The project is in a rapid development phase to harmonize knowledge, store it, analyze it, and present it to the community through a web portal, direct downloads, and application programming interfaces …

Theory And Tools: The Future Of Technology-Based Learning (Slides), Andrew S. Gibbons Iii

Faculty Publications

We are entering a narrow passage that will see great instability in learning technology, instruction, and distance education. My purpose is to talk about two changes that I believe will redirect the entire future of technology-based education.

Analysis Of Wingtip Vortex Structure Generated By Bio-Inspired Winglets, D'Zahn A. Smith

Doctoral Dissertations and Master's Theses

Bio-inspired winglets were studied with the goal of better understanding the structure of the wingtip vortices they generate. Measurements of the tip vortex were previously carried out using stereoscopic particle image velocimetry (sPIV). The bio-inspired winglet was tested on a rectangular NACA 0012 wing section at a 5-degree angle of attack and at a chord Reynolds number of 900,000. Velocity field measurements were recorded at 0.7 and 2 chord lengths aft of the wing’s trailing edge. Compared to the wing with no attachment and a traditional blended winglet, the bio-inspired winglet’s vortex exhibited significantly less intense flow field properties. These …

Theory And Tools: The Future Of Technology-Based Learning (Script), Andrew S. Gibbons Iii

Faculty Publications

We are entering a narrow passage that will see great instability in learning technology, instruction, and distance education. My purpose is to talk about two changes that I believe will redirect the entire future of technology-based education.

Neuroepigenetic Mechanisms Of Brain Development: From Technology To Biological Insights, Allen Yen

Arts & Sciences Graduate Student Theses and Dissertations

Each cell in the brain has the same genomic sequence, yet they can have vastly different phenotypes and function. This diversity is a result of complex genetic and signaling pathways, and knowing how these are regulated is key to understanding physiological development and how pathogenic dysfunctions arise. Genomic methods such as chromatin immunoprecipitation followed by sequencing (ChIP-seq) and assay for transposase-accessible chromatin with sequencing (ATAC-seq) have played pivotal roles in dissecting these processes. However, a key limitation is that the cells are destroyed upon observation of their molecular states, which preclude our ability to correlate historical epigenetic information with future …

Searching For Regulators Of Catalase Activity Using Enzymatic Screens, Aram Joseph Alaxanian

Legacy Theses & Dissertations (2009 - 2024)

Catalase is found in a plethora of organisms and plays a crucial role in safeguarding cells against oxidative stress-induced damage to proteins, RNA, and DNA. Catalase catalyzed the decomposition of hydrogen peroxide (H2O2) into oxygen and water. Deficiencies in catalase have been linked to pathological conditions such as Diabetes, Alzheimer's, and Cancer, underscoring its significance in cellular health. In bacteria like Escherichia coli, catalase is encoded by two genes, KatG and KatE, both subject to regulation through transcription, translation, and post-translational modification. Our study focused on assessing the catalase activity of mutants lacking stress response genes (e.g., lexA, soxR, soxS, …

Role Of M6a Rna Methylation In Skeletal Muscle Regeneration, Isreal Ayobami Onifade

Legacy Theses & Dissertations (2009 - 2024)

Skeletal muscle is essential in orchestrating voluntary movement and contributes to approximately half of the body's overall mass. Dysregulation in proper skeletal muscle development can lead to muscle degenerative disorders, such as severe Duchenne Muscular Dystrophy (DMD). Understanding the process of muscle development has been the central focus of numerous biological studies, focusing on myogenic transcription factors and signaling molecules like Pax3, Pax7, Myf5, MyoD, WNT, TGF-β, and BMP, IGF1, AKT/mTOR pathway. Also, studies have suggested that m6A (N6-methyladenosine) plays a crucial role in various biological processes, including skeletal muscle regeneration and development. m6A modification is the prevalent form of …

Targeting Dendritic Cell Dysfunction To Circumvent Anti-Pd1 Resistance In Head And Neck Cancer, Shin Saito, Michihisa Kono, Hoang C B Nguyen, Ann Marie Egloff, Cameron Messier, Patrick Lizotte, Cloud Paweletz, Douglas Adkins, Ravindra Uppaluri

2020-Current year OA Pubs

PURPOSE: Neoadjuvant anti-PD1 (aPD1) therapies are being explored in surgically resectable head and neck squamous cell carcinoma (HNSCC). Encouraging responses have been observed, but further insights into the mechanisms underlying resistance and approaches to improve responses are needed.

EXPERIMENTAL DESIGN: We integrated data from syngeneic mouse oral carcinoma (MOC) models and neoadjuvant pembrolizumab HNSCC patient tumor RNA-sequencing data to explore the mechanism of aPD1 resistance. Tumors and tumor-draining lymph nodes (DLN) from MOC models were analyzed for antigen-specific priming. CCL5 expression was enforced in an aPD1-resistant model.

RESULTS: An aPD1-resistant mouse model showed poor priming in the tumor DLN due …

Architects Of Influence: Pioneers Who Shaped Today's Architecture, Carlynn Olinger

University Honors College

Architecture is a world that many people take advantage of and don’t understand the complexity behind it. There are many people in history who made a path for the way the world functions today, some of these people are architects. There are five men specifically: Antoni Gaudi, Frank Lloyd Wright, Ludwig Meis Van Der Rohe, Le Corbusier, and Louis Kahn, who pioneered the way for technology, education, aesthetics, and functionality of architecture. By researching we can learn who they were, what they did, and how they did it. Each one of these architects had different struggles, goals, backgrounds, and ideas. …

Development And Characterization Of A Low Intensity Vibrational System For Microgravity Studies, Omor Khan

Boise State University Theses and Dissertations

The advent of extended-duration human spaceflight demands a better comprehension of the physiological impacts of microgravity. One primary concern is the adverse impact on the musculoskeletal system, including muscle atrophy and bone density reduction. Ground-based microgravity simulations have provided insights, with vibrational bioreactors emerging as potential mitigators of these negative effects. Despite the potential they have, the adaptation of vibrational bioreactors for space remains unfulfilled, resulting in a significant gap in microgravity research. This paper introduces the first automated low-intensity vibrational (LIV) bioreactor designed specifically for the International Space Station (ISS) environment. Our research covers the bioreactor's design and characterization, …

Key Variants Via The Alzheimer's Disease Sequencing Project Whole Genome Sequence Data, Yanbing Wang, Chloé Sarnowski, Honghuang Lin, Achilleas N Pitsillides, Nancy L Heard-Costa, Seung Hoan Choi, Dongyu Wang, Joshua C Bis, Elizabeth E Blue, Eric Boerwinkle, Philip L De Jager, Myriam Fornage, Ellen M Wijsman, Sudha Seshadri, Josée Dupuis, Gina M Peloso, Anita L Destefano

Faculty, Staff and Student Publications

INTRODUCTION: Genome-wide association studies (GWAS) have identified loci associated with Alzheimer's disease (AD) but did not identify specific causal genes or variants within those loci. Analysis of whole genome sequence (WGS) data, which interrogates the entire genome and captures rare variations, may identify causal variants within GWAS loci.

METHODS: We performed single common variant association analysis and rare variant aggregate analyses in the pooled population (N cases = 2184, N controls = 2383) and targeted analyses in subpopulations using WGS data from the Alzheimer's Disease Sequencing Project (ADSP). The analyses were restricted to variants within 100 kb of 83 previously …

Application Of Microphytes For Soil Reclamation, Lalit Saini, Hina Upadhyay, Arindam Chakraborty

Research Publications (2021 to 2025)

Microphytes incorporate several characteristics that are becoming increasingly important in a complex farming setting and the process of land reclamation. Microalgae/microphytes boost soil productivity and structure by adding minerals and improving microbial soil quality metrics and nutrient cycling. Protecting plants from disease, producing phytohormones and other bioactive compounds, and associating with plant roots are the ways through which microalgae contribute to plant development. These results are significant as they could lead to further advancements in the discovery of substances that can boost growth or the development of crops that do not need nitrogen. Microalgae have massive untapped capabilities as natural …

Identification Of The Phosphatase Nudt5 As A Target For The Treatment Of Triple Negative Breast Cancer, Jing Qian

Dissertations and Theses (Open Access)

Abstract

Background: Triple-negative breast cancer (TNBC) is the most malignant subtype of breast cancer, characterized by the absence of estrogen receptor (ER) and progesterone receptor (PR) expression, as well as the lack of overexpression of the human epidermal growth factor receptor 2 (HER2). Unlike ER-positive and HER2-positive tumors that can be treated with hormone therapy or HER2-targeted treatment, respectively, triple-negative breast cancer (TNBC) poses a challenge with limited treatment alternatives for affected women. The currently FDA-approved systemic regimens for TNBC patients remain as conventional chemotherapy and PARP inhibitors (only applicable for a subset of BRCA-mutated TNBC patients). Consequently, our …

Synthesis, Characterization , Thermal Studies And Antioxidant Activities Of Transition Metal Complexes With Azo Dye Ligand, Amnah Mahdi Abdullah, Abbas Ali Salih Al-Hamdani

Baghdad Science Journal

Diazotization reaction between 1-(2,4,6-Trihydroxy-phenyl)-ethanone and diazonium salts was carried out resulting in ligand 4-(3-Acetyl-2,4,6-trihydroxy-phenylazo)-N-(5-methyl-isoxazol-3-yl)-benzenesulfonamide, this in turn reacted with the next metal ions (V4+ , Cr3+ , Mn2+ and Cu2+) forming stable complexes with unique geometries such as (Octahedral for both Cr3+ , Mn2+ and Cu2+ ,squar pyramidal for V4+). The creation of such complexes was detected by employing spectroscopic means involving ultraviolet-visible which proved the obtained geometries, fourier transfer proved the formation of azo group and and the coordination with metal ion through it. Pyrolysis (TGA & DSC) studies proved the coordination of water residues with metal ions inside …

Biotinylated Protein Capture And Tween-20 Assisted Exosome Isolations Via Capillary Chanelled Polymer Fiber, Md Khalid Bin Islam

All Theses

In the past two decades, Marcus and colleagues have led the advancement of capillary-channeled polymer (C-CP) fiber stationary phases for biomacromolecule separations, including proteins and nanovesicles. These stationary phases offer notable advantages, including low cost ($5/column), straightforward column fabrication, and the capacity for on-column surface modification, enabling high chemical selectivity. This study examines a C-CP fiber modification strategy for capturing target proteins and develops a Tween-20-assisted C-CP-based hydrophobic interaction chromatography (HIC) method for the isolation and quantification of exosomes from human urine.

The quest for higher-throughput and cost-effective protein isolation techniques remains a key focus in a variety of end …

​Behavioral, Physiological, And Circadian Effects Of Constant Light On Bling C3h/Hen And C3h/Hej, Samantha G. Burke

Honors Program Theses and Projects

Circadian disruptions are quite detrimental to one’s health- leading to many different diseases. The suprachiasmatic nuclei (SCN) (center of regulation of the circadian clock) can perceive light from the retina, allowing the SCN to register cues such as light to aid in regulating the biological clock. Due to this connection constant light is a common disruption, which can cause increased hyperactivity, anxiety, and altered circadian rhythm in mice. This study’s purpose is to determine how two rhodopsin lacking blind sub-strains of C3H mice respond to constant light regarding their behavior, physiology, and their circadian clock, as well as investigating any …

Direct Implantation Of Patient Brain Tumor Cells Into Matching Locations In Mouse Brains For Patient-Derived Orthotopic Xenograft Model Development, Lin Qi, Patricia Baxter, Mari Kogiso, Huiyuan Zhang, Frank K Braun, Holly Lindsay, Sibo Zhao, Sophie Xiao, Aalaa Sanad Abdallah, Milagros Suarez, Zilu Huang, Wan Yee Teo, Litian Yu, Xiumei Zhao, Zhigang Liu, Yulun Huang, Jack M Su, Tsz-Kwong Man, Ching C Lau, Laszlo Perlaky, Yuchen Du, Xiao-Nan Li

Center for Medical Ethics and Health Policy Staff Publications

Background: Despite multimodality therapies, the prognosis of patients with malignant brain tumors remains extremely poor. One of the major obstacles that hinders development of effective therapies is the limited availability of clinically relevant and biologically accurate (CRBA) mouse models.

Methods: We have developed a freehand surgical technique that allows for rapid and safe injection of fresh human brain tumor specimens directly into the matching locations (cerebrum, cerebellum, or brainstem) in the brains of SCID mice.

Results: Using this technique, we successfully developed 188 PDOX models from 408 brain tumor patient samples (both high-and low-grade) with a success rate of 72.3% …

Human Papillomavirus And Associated Cancers: A Review, Janiese E Jensen, Greta L Becker, J Brooks Jackson, Mary B Rysavy

Faculty, Staff and Student Publications

The human papillomavirus is the most common sexually transmitted infection in the world. Most HPV infections clear spontaneously within 2 years of infection; however, persistent infection can result in a wide array of diseases, ranging from genital warts to cancer. Most cases of cervical, anal, and oropharyngeal cancers are due to HPV infection, with cervical cancer being one of the leading causes of cancer death in women worldwide. Screening is available for HPV and cervical cancer, but is not available everywhere, particularly in lower-resource settings. HPV infection disproportionally affects individuals living with HIV, resulting in decreased clearance, increased development of …

2024 Lynn University Student Research Symposium, Lynn University

Student Research Symposium Programs

2024 Lynn University Student Research Symposium Program

Analyzing Drosophila Melanogaster Circadian Rhythms Using Dam3 And Shiny-R Analysis, Maria Eduarda Couto Dourado, Kimberly D. Rowland

Student Publications and Presentations

Circadian rhythms are changes in behavior over a 24-hour period, that most animals experience. Light and darkness have the biggest influence on the behavior change. (U.S. DHHS). Flies reared in dark environments even more than 300 generations still have circadian rhythms (reference). This study analyzes data from the DAM, which allows us to study circadian rhythms in flies after various treatments and conditionings. Flies exposed to a dark environment for a week after two treatments were analyzed for any changes to their normal patterns. Comprehending the circadian rhythms of Drosophila is essential for grasping the molecular and genetic foundations of …

Student Research Symposium Schedule 2024, Texas A&M University-San Antonio

Student Research Symposium 2024 (Archived)

No abstract provided.

The Relationship Between Social Media Usage, Loneliness, And Mindfulness In College Students, Edward Cook

Liberty University Research Week

In recent years, both social media usage and loneliness have been increasing for young adults. While previous work has revealed a relationship between social media usage and loneliness among young adults, the purpose of the current study is to examine if mindfulness mediates this relationship and if different types of social media engagement moderate this relationship. We hypothesize that higher social media usage will be related to higher loneliness, which will be mediated by lower mindfulness, and that specific types of social media engagement will moderate the relationship between higher social media usage and higher loneliness. Participants will complete a …

Synthesis And Characterization Of Polymeric Nanoparticles To Enhance Celleullar Drug Delivery, Rahma Aly

Chemistry Theses

Medicines in the form of nanoparticles called nanomedicines, stand at the forefront of revolutionary advancements in healthcare, offering precise drug delivery and diagnostic capabilities. A recent example of nanomedicine in the clinic is the COVID-19 vaccine, which helped prevent death during the pandemic. While the potential benefits are immense, a myriad of challenges complicate their seamless integration into clinical practice. The design and fabrication of nanoparticles demand meticulous attention to biocompatibility and toxicity. Interactions with biological systems are complex, requiring a delicate balance between therapeutic efficacy and safety. The reticuloendothelial system's rapid clearance of nanoparticles, their instability in physiological environments, …