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2022

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Designing “‘Queer’ Across Cultures:” Disrupting The Consumption Of Diversity, Kim Berry Nov 2022

Designing “‘Queer’ Across Cultures:” Disrupting The Consumption Of Diversity, Kim Berry

Humboldt Journal of Social Relations

This article charts the underlying logic and structure of a course titled “‘Queer’ Across Cultures,” created to provide a transnational focus for the groundbreaking minor in Multicultural Queer Studies, spearheaded by Eric Rofes. Concerned that students would too easily revert to a practice of consuming diversity, I have attempted to weave together readings which complicate a colonial gaze by challenging hegemonic constructions of essential difference. My primary strategy in crafting this course has been to focus on the term “across” in the title. In other words to foreground and theorize the transnational within the production of both similarities and differences …

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Full Journal Nov 2022

Full Journal

Humboldt Journal of Social Relations

The theme of Issue 34 of the Humboldt Journal of Social Relations is Social Justice Action, Teaching, and Research.

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Synthetic Amphiphiles As Antibiotic Potentiators, Helena Spikes Nov 2022

Synthetic Amphiphiles As Antibiotic Potentiators, Helena Spikes

Dissertations

Antibiotic resistance has become a massive threat to modern medicine. Bacteria acquire resistance either through genetic mutations or mobile genetic elements, such as plasmids. The growing resistance crisis is exacerbated by over-prescription of antibiotics and improper use. As antimicrobial resistance becomes more widespread, superbugs (bacteria resistant to more than one class of drug) have evolved. Since few new drugs reach clinical trials and even fewer are approved by the FDA, we must find a way to make existing drugs more potent. One technique to accomplish this is by using combination therapy. By administering two or more drugs at a time, …

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Digitally Predicting Protein Localization And Manipulating Protein Activity In Fluorescence Images Using 4d Reslicing Gan, Yang Jiao, Lingkun Gu, Yingtao Jiang, Mo Weng, Mei Yang Nov 2022

Digitally Predicting Protein Localization And Manipulating Protein Activity In Fluorescence Images Using 4d Reslicing Gan, Yang Jiao, Lingkun Gu, Yingtao Jiang, Mo Weng, Mei Yang

Electrical & Computer Engineering Faculty Research

While multi-channel fluorescence microscopy is a vital imaging method in biological studies, the number of channels that can be imaged simultaneously is limited by technical and hardware limitations such as emission spectra cross-talk. One solution is using deep neural networks to model the localization relationship between two proteins so that the localization of one protein can be digitally predicted. Furthermore, the input and predicted localization implicitly reflect the modeled relationship. Accordingly, observing the response of the prediction via manipulating input localization could provide an informative way to analyze the modeled relationships between the input and the predicted proteins.

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Controlling The Heterogeneous Vancomycin Intermediated Staphylococcus Aureus (Hvisa) Through The Use Of Rosmarinus Officinalis L. Leaves Extract, Osamah Z. Al-Hayali, Mohammed. F. Al-Marjani, Abbas Maleki Nov 2022

Controlling The Heterogeneous Vancomycin Intermediated Staphylococcus Aureus (Hvisa) Through The Use Of Rosmarinus Officinalis L. Leaves Extract, Osamah Z. Al-Hayali, Mohammed. F. Al-Marjani, Abbas Maleki

Karbala International Journal of Modern Science

Treatment failure and persistent infection are two serious problems that result from Staphylococcus aureus having decreased vancomycin susceptibility. The present study investigates the effects of Rosmarinus officinalis L. leaves extract on the growth and quorum sensing (QS) of heterogeneous vancomycin-intermediate S. aureus hVISA isolates. Real-time RT-polymerase chain reaction (PCR) is used to determine the transcriptional changes of the accessory gene regulator (agr) in the (hVISA) strain after and before being treated with the R. officinalis leaves extract. The antibacterial activity of the EOs was determined through the use of a microtitre plate test (MtP); with a minimum inhibitory …

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A Patent-Based Approach To Understanding The Role Of University, Company, And Government Collaboration In Biotechnological Innovation, Rachel Strader Nov 2022

A Patent-Based Approach To Understanding The Role Of University, Company, And Government Collaboration In Biotechnological Innovation, Rachel Strader

Theses

The biotechnology industry has shifted in recent years in corporate policy from a more traditional, closed research and development (R&D) model to an open innovation (OI) model, leading to increased collaboration between companies and academic institutions. The literature has reinforced this shift by demonstrating the role these collaborative relationships play in contributing to high-quality innovations. In this study, I use a unique dataset composed of biotechnology patents granted in the United States from 2000-2020 to examine the relationship between patent assignee and patent quality. Specifically, I measure patent quality using the number of forward citations and patent family size and …

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A Novel Ibuprofen Derivative And Its Complexes: Physicochemical Characterization, Dft Modeling, Docking, In Vitro Anti-Inflammatory Studies, And Dna Interaction, Abbas M. Abbas, Ahmed Aboelmagd, Safaa M. Kishk, Hossam H. Nasrallah, W. Christropher Boyd, Haitham F. Kalil, Adel S. Orabi Nov 2022

A Novel Ibuprofen Derivative And Its Complexes: Physicochemical Characterization, Dft Modeling, Docking, In Vitro Anti-Inflammatory Studies, And Dna Interaction, Abbas M. Abbas, Ahmed Aboelmagd, Safaa M. Kishk, Hossam H. Nasrallah, W. Christropher Boyd, Haitham F. Kalil, Adel S. Orabi

Chemistry Faculty Publications

A novel derivative of ibuprofen and salicylaldehyde N '-(4-hydroxybenzylidene)-2-(4-isobutylphenyl) propane hydrazide (HL) was synthesized, followed by its complexation with Cu, Ni, Co, Gd, and Sm. The compounds obtained were characterized by (HNMR)-H-1, mass spectrometry, UV-Vis spectroscopy, FT-IR spectroscopy, thermal analysis (DTA and TGA), conductivity measurements, and magnetic susceptibility measurements. The results indicate that the complexes formed were [Cu(L)(H2O)]Cl center dot 2H(2)O, [Ni(L)(2)], [Co(L)(2)]center dot H2O, [Gd(L)(2)(H2O)(2)](NO3)center dot 2H(2)O and [Sm(L)(2)(H2O)(2)](NO3)center dot 2H(2)O. The surface characteristics of the produced compounds were evaluated by DFT calculations using the MOE environment. The docking was performed against the COX2 targeting protein (PDB code: 5IKT …

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Histone Demethylase Kdm5d Drives Sex-Specific Differences In Colorectal Cancer, Jiexi Li, Zhengdao Lan, Wenting Liao, James W. Horner, Xueping Xu, Jielin Liu, Yohei Yoshihama, Shan Jiang, Hong Seok Shim, Max Slotnik, Chang-Jiun Wu, Kenneth Dunner, Jr., Rumi Lee, Isha Khanduri, Christopher Terranova, Kadir Caner Akdemir, Deepavali Chakravarti, Kyle Labella, Wen-Hao Hsu, Denise J. Spring, Y. Alan Wang, Ronald A. Depinho Nov 2022

Histone Demethylase Kdm5d Drives Sex-Specific Differences In Colorectal Cancer, Jiexi Li, Zhengdao Lan, Wenting Liao, James W. Horner, Xueping Xu, Jielin Liu, Yohei Yoshihama, Shan Jiang, Hong Seok Shim, Max Slotnik, Chang-Jiun Wu, Kenneth Dunner, Jr., Rumi Lee, Isha Khanduri, Christopher Terranova, Kadir Caner Akdemir, Deepavali Chakravarti, Kyle Labella, Wen-Hao Hsu, Denise J. Spring, Y. Alan Wang, Ronald A. Depinho

Leading Edge of Cancer Research Symposium 2022

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Sialidase Inhibitors With Different Mechanisms, Joseph M. Keil, Garrett R. Rafn, Isaac M. Turan, Majdi A. Aljohani, Reza Sahebjam-Atabaki, Xue-Long Sun Oct 2022

Sialidase Inhibitors With Different Mechanisms, Joseph M. Keil, Garrett R. Rafn, Isaac M. Turan, Majdi A. Aljohani, Reza Sahebjam-Atabaki, Xue-Long Sun

Chemistry Faculty Publications

Sialidases, or neuraminidases, are enzymes that catalyze the hydrolysis of sialic acid (Sia)-containing molecules, mostly removal of the terminal Sia (desialylation). By desialylation, sialidase can modulate the functionality of the target compound and is thus often involved in biological pathways. Inhibition of sialidases with inhibitors is an important approach for under-standing sialidase function and the underlying mechanisms and could serve as a therapeutic approach as well. Transition-state analogues, such as anti-influenza drugs oseltamivir and zanamivir, are major sialidase inhibitors. In addition, difluoro-sialic acids were developed as mechanism-based sialidase inhibitors. Further, fluorinated quinone methide-based suicide substrates were reported. Sialidase product analogue …

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New Biology Chair Aims To Lift Program To New Heights, Abigail Martin Oct 2022

New Biology Chair Aims To Lift Program To New Heights, Abigail Martin

University of Mississippi News

Sixue Chen brings focus on plant efficiency and desire to increase student opportunities

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Whole Genome Sequencing Of Moraxella Bovis Strains From North America Reveals Two Genotypes With Different Genetic Determinants, Emily L. Wynn, Matthew M. Hille, John Dustin Loy, Gennie Schuller, Kristen L. Kuhn, Aaron M. Dickey, James L. Bono, Michael L. Clawson Oct 2022

Whole Genome Sequencing Of Moraxella Bovis Strains From North America Reveals Two Genotypes With Different Genetic Determinants, Emily L. Wynn, Matthew M. Hille, John Dustin Loy, Gennie Schuller, Kristen L. Kuhn, Aaron M. Dickey, James L. Bono, Michael L. Clawson

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: Moraxella bovis and Moraxella bovoculi both associate with infectious bovine keratoconjunctivitis (IBK), an economically significant and painful ocular disease that affects cattle worldwide. There are two genotypes of M. bovoculi (genotypes 1 and 2) that differ in their gene content and potential virulence factors, although neither have been experimentally shown to cause IBK. M. bovis is a causative IBK agent, however, not all strains carry a complete assortment of known virulence factors. The goals of this study were to determine the population structure and depth of M. bovis genomic diversity, and to compare core and accessory genes and …

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The Immune Signatures Data Resource, A Compendium Of Systems Vaccinology Datasets., Joann Diray-Arce, Helen E R Miller, Evan Henrich, Bram Gerritsen, Matthew P Mulè, Slim Fourati, Jeremy Gygi, Thomas Hagan, Lewis Tomalin, Dmitry Rychkov, Dmitri Kazmin, Daniel G Chawla, Hailong Meng, Patrick Dunn, John Campbell, The Human Immunology Project Consortium (Hipc), Minnie Sarwal, John S Tsang, Ofer Levy, Bali Pulendran, Rafick Sekaly, Aris Floratos, Raphael Gottardo, Steven H Kleinstein, Mayte Suárez-Fariñas Oct 2022

The Immune Signatures Data Resource, A Compendium Of Systems Vaccinology Datasets., Joann Diray-Arce, Helen E R Miller, Evan Henrich, Bram Gerritsen, Matthew P Mulè, Slim Fourati, Jeremy Gygi, Thomas Hagan, Lewis Tomalin, Dmitry Rychkov, Dmitri Kazmin, Daniel G Chawla, Hailong Meng, Patrick Dunn, John Campbell, The Human Immunology Project Consortium (Hipc), Minnie Sarwal, John S Tsang, Ofer Levy, Bali Pulendran, Rafick Sekaly, Aris Floratos, Raphael Gottardo, Steven H Kleinstein, Mayte Suárez-Fariñas

Faculty Research 2022

Vaccines are among the most cost-effective public health interventions for preventing infection-induced morbidity and mortality, yet much remains to be learned regarding the mechanisms by which vaccines protect. Systems immunology combines traditional immunology with modern 'omic profiling techniques and computational modeling to promote rapid and transformative advances in vaccinology and vaccine discovery. The NIH/NIAID Human Immunology Project Consortium (HIPC) has leveraged systems immunology approaches to identify molecular signatures associated with the immunogenicity of many vaccines. However, comparative analyses have been limited by the distributed nature of some data, potential batch effects across studies, and the absence of multiple relevant studies …

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Thermal Analysis Of Ws Series Cooling Agent, 1li Yi-Rong, Zhu Rui-Zhi, Jiang Wei, Jiang Li-Hong, Yang Ji Oct 2022

Thermal Analysis Of Ws Series Cooling Agent, 1li Yi-Rong, Zhu Rui-Zhi, Jiang Wei, Jiang Li-Hong, Yang Ji

Food and Machinery

Objective: Evaluation of the safety of WS series cooling agents for cigarettes. Methods: In this paper, pyrolysis-gas chromatography-mass spectrometry (Py-GC/MS) and thermogravimetric (TG) methods were used to study the pyrolysis behavior and content distribution of WS series cooling agents in tobacco under different atmospheres. Results: Through TG/DSC analysis, WS-3, WS-5, and WS-23 had only one obvious thermal weight loss stage, and the maximum weight loss rates occurred at 251.8, 281.6, and 206.5 ℃, respectively. The three cooling agents all showed sharp endothermic peaks before weight loss, and a phase transition process of melting occurred. It was speculated …

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A Nanofiber-Embedded Microfluidic Platform For Studying Neurobiology, Donghee Lee, Navatha Shree Sharma, S. M. Shatil Shahriar, Kai Yang, Zheng Yan, Jingwei Xie Oct 2022

A Nanofiber-Embedded Microfluidic Platform For Studying Neurobiology, Donghee Lee, Navatha Shree Sharma, S. M. Shatil Shahriar, Kai Yang, Zheng Yan, Jingwei Xie

Department of Mechanical and Materials Engineering: Faculty Publications

Due to their biomimetic properties, electrospun nanofibers have been widely used in neurobiology studies. However, mechanistic understanding of cell-nanofiber interactions is challenging based on the current in vitro culture systems due to the lack of control of spatiotemporal patterning of cells and difficulty in monitoring single cell behavior. To overcome these issues, we apply microfluidic technology in combination with electrospun nanofibers for in vitro studies of interactions between neurons and nanofiber materials. We demonstrate a unique nanofiber embedded microfluidic device which contains patterned aligned or random electrospun nanofibers as a new culture system. With this device, we test how different …

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Finding Aid For The Edmund Keiser Collection (Mum00771) Oct 2022

Finding Aid For The Edmund Keiser Collection (Mum00771)

Archives & Special Collections: Finding Aids (alphabetical)

Collection of bound thesis, dissertation, field notes, and reports submitted from Dr. Edmund Keiser.

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Calanoid Copepods Of China Seas-Introduction And Acknowledgement, Chang-Tai Shih, Qing-Chao Chen, Yang-Chi Lan, Shih-Hui Hsiao, Chi-Yu Weng Oct 2022

Calanoid Copepods Of China Seas-Introduction And Acknowledgement, Chang-Tai Shih, Qing-Chao Chen, Yang-Chi Lan, Shih-Hui Hsiao, Chi-Yu Weng

Journal of Marine Science and Technology–Taiwan

No abstract provided.

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Phytochemical Investigation Of Egyptian Spinach Leaves, A Potential Source For Antileukemic Metabolites: In Vitro And In Silico Study, Shimaa M. Abdelgawad, Mona H. Hetta, Mohamed A. Ibrahim, Premalatha Balachandran Oct 2022

Phytochemical Investigation Of Egyptian Spinach Leaves, A Potential Source For Antileukemic Metabolites: In Vitro And In Silico Study, Shimaa M. Abdelgawad, Mona H. Hetta, Mohamed A. Ibrahim, Premalatha Balachandran

Faculty and Student Publications

Spinacia oleracea L., Amaranthaceae, leaves cultivated in Egypt demonstrated a potential antileukemic activity against the chronic myeloid leukemia, K562 cell line. Thus, the aim of this study is to carry out a phytochemical investigation of S. oleracea leaves as well as the isolation of its antileukemic phytoconstituents. Phytochemical investigation of S. oleracea leaves resulted in the isolation of seventeen known compounds. The biological study revealed that compounds hexaprenol, phytol, and 18-[(1-oxohexadecyl) oxy]-9-octadecenoic acid exhibited a remarkable antiproliferative activity against K562 cells in vitro. A mechanistic in silico study showed that hexaprenol, phytol, and 18-[(1-oxohexadecyl) oxy]-9-octadecenoic acid exhibited a strong binding …

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Monitoring Translation Regulation By Structured Rna Elements, Caroline Focht Oct 2022

Monitoring Translation Regulation By Structured Rna Elements, Caroline Focht

Yale Graduate School of Arts and Sciences Dissertations

Translation initiation across domains of life is a tightly regulated process, and functional RNA motifs are critical regulatory features. This dissertation largely focuses on developing a novel technique with which to quantify the effect these RNA elements have on translation initiation and on unraveling the functional requirements of these structures. I have leveraged RelE’s ribosome-dependent endonuclease activity to develop a quantitative assay for translationally regulated mRNAs and validated this method on two bacterial translational riboswitches. I have also demonstrated its applicability to eukaryotic systems by showing that RelE can measure isoform-driven differences in ribosome loading between yeast 5′ leader sequences. …

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Understanding Distinct Roles Of Egfr Family Mutations In Different Cancers, Chun Hu Oct 2022

Understanding Distinct Roles Of Egfr Family Mutations In Different Cancers, Chun Hu

Yale Graduate School of Arts and Sciences Dissertations

The epidermal growth factor receptor (EGFR) is frequently mutated in human cancer and is an important therapeutic target. EGFR inhibitors have been successful in lung cancer, where mutations in the intracellular tyrosine kinase domain activate the receptor, but not in glioblastoma multiform (GBM), where mutations occur exclusively in the extracellular region. In this dissertation, I show that common extracellular GBM mutations prevent EGFR from discriminating between its activating ligands. Different growth factor ligands stabilize distinct EGFR dimer structures that signal with different kinetics to specify or bias outcome. EGF itself induces strong symmetric dimers that signal transiently to promote proliferation. …

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Translational Systems Metabolism In Health And Disease, Brooks Phillip Leitner Oct 2022

Translational Systems Metabolism In Health And Disease, Brooks Phillip Leitner

Yale Graduate School of Arts and Sciences Dissertations

The breakdown, synthesis, and interconversion of macronutrients is essential to sustaining life and driving pathological mechanisms rooted in disease. With attempts to combat the metabolic underpinnings of disease, it has become clear that focus on individual metabolites, proteins, or genes cannot fully explain the complexity of dysregulated metabolism in systemic conditions such as obesity, cancer, and sepsis. With the advent of accessible Omics techniques and hordes of open access data it has become possible to study metabolism as a whole—at the level of gene transcription, translation, and metabolism. A major goal of this PhD thesis was to integrate isotope tracing …

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Synthetic Studies Of Colibactin, A Carcinogenic Gut Microbiome Metabolite, Kevin Mark Wernke Oct 2022

Synthetic Studies Of Colibactin, A Carcinogenic Gut Microbiome Metabolite, Kevin Mark Wernke

Yale Graduate School of Arts and Sciences Dissertations

The human microbiota is now understood to be intimately linked to host physiology. Recent studies indicate that microbiota species which possess a biosynthetic gene cluster – termed clb – contribute to the development and progression of colorectal cancer. Bacteria possessing the clb gene cluster are correlated to colorectal cancer (CRC) in humans, initiate colonic tumor and polyp formation in murine models, and induce DNA interstrand cross-links in cell models. Furthermore, clb+ bacteria induce a unique mutational signature which has been detected in a number of human tumor samples. Early studies by Oswald and co-workers established that the final product of …

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Spatial Variation In Hard Bottom Coral Communities Of The Coastal West Florida Shelf, Nicole Blank, Sandra D. Brooke, Brian K. Walker Oct 2022

Spatial Variation In Hard Bottom Coral Communities Of The Coastal West Florida Shelf, Nicole Blank, Sandra D. Brooke, Brian K. Walker

Marine & Environmental Sciences Faculty Articles

Hard bottom coral and sponge communities differ along portions of the West Florida Shelf (WFS) in species occurrence, diversity, and/or size. However, the composition and spatial distribution of these communities are not well understood. Community transitions have been proposed in the central portion of the WFS around Tampa Bay, Cedar Key, and as far south as Charlotte Harbor, but supporting data are sparse. Fifteen sites in three regions of Florida were surveyed for species distribution, density, and demographics. Distinct communities were found between St Teresa, Hudson, and Tarpon Springs. Coral and sponge densities were highest off Tarpon Springs followed by …

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Changes In The Regulation Of The Unfolded Protein Response During Aging In Peromyscus, Elham Soltanmohammadi Oct 2022

Changes In The Regulation Of The Unfolded Protein Response During Aging In Peromyscus, Elham Soltanmohammadi

Theses and Dissertations

Endoplasmic reticulum (ER) stress has been linked to various metabolic pathologies, neurodegeneration, and aging. Although various mechanistic aspects of the resulting unfolded protein response (UPR) have been elucidated, its regulation in genetically diverse populations remains elusive. In the present study we evaluated the expression of chaperones BiP/GRP78, GRP94 and calnexin (CANX) in the lungs, liver, and brain of 7 months old and 2–3 years old outbred deer mice P. maniculatus and P. leucopus. Chaperones’ _expression was highly variable between species, tissues and ages suggesting that levels of expression of individual chaperones do not change consistently during aging. Despite this variation, …

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Exploring The Student Experience In An Asynchronous Virtual Introductory Biology Course, Eve Abraha, Lauren Crowe Sep 2022

Exploring The Student Experience In An Asynchronous Virtual Introductory Biology Course, Eve Abraha, Lauren Crowe

Teaching and Learning Together in Higher Education

No abstract provided.

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Integrated Stem Cell Signature And Cytomolecular Risk Determination In Pediatric Acute Myeloid Leukemia., Benjamin J. Huang, Jenny L. Smith, Jason E. Farrar, Yi-Cheng Wang, Masayuki Umeda, Rhonda E. Ries, Amanda R. Leonti, Erin Crowgey, Scott N. Furlan, Katherine Tarlock, Marcos Armendariz, Yanling Liu, Timothy I. Shaw, Lisa Wei, Robert B. Gerbing, Todd M. Cooper, Alan S. Gamis, Richard Aplenc, E Anders Kolb, Jeffrey Rubnitz, Jing Ma, Jeffery M. Klco, Xiaotu Ma, Todd A. Alonzo, Timothy Triche, Soheil Meshinchi Sep 2022

Integrated Stem Cell Signature And Cytomolecular Risk Determination In Pediatric Acute Myeloid Leukemia., Benjamin J. Huang, Jenny L. Smith, Jason E. Farrar, Yi-Cheng Wang, Masayuki Umeda, Rhonda E. Ries, Amanda R. Leonti, Erin Crowgey, Scott N. Furlan, Katherine Tarlock, Marcos Armendariz, Yanling Liu, Timothy I. Shaw, Lisa Wei, Robert B. Gerbing, Todd M. Cooper, Alan S. Gamis, Richard Aplenc, E Anders Kolb, Jeffrey Rubnitz, Jing Ma, Jeffery M. Klco, Xiaotu Ma, Todd A. Alonzo, Timothy Triche, Soheil Meshinchi

Manuscripts, Articles, Book Chapters and Other Papers

Relapsed or refractory pediatric acute myeloid leukemia (AML) is associated with poor outcomes and relapse risk prediction approaches have not changed significantly in decades. To build a robust transcriptional risk prediction model for pediatric AML, we perform RNA-sequencing on 1503 primary diagnostic samples. While a 17 gene leukemia stem cell signature (LSC17) is predictive in our aggregated pediatric study population, LSC17 is no longer predictive within established cytogenetic and molecular (cytomolecular) risk groups. Therefore, we identify distinct LSC signatures on the basis of AML cytomolecular subtypes (LSC47) that were more predictive than LSC17. Based on these findings, we build a …

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Facilitating Open Science Without Sacrificing Ip Rights, Or Cohen Sasson, Ofer Tur‐Sinai Sep 2022

Facilitating Open Science Without Sacrificing Ip Rights, Or Cohen Sasson, Ofer Tur‐Sinai

Articles

No abstract provided.

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Gamma Protocadherin Synaptic Localization And Intracellular Trafficking Is Consistent With Distinct Adhesive And Anti-Adhesive Roles In Development, Nicole Lamassa Sep 2022

Gamma Protocadherin Synaptic Localization And Intracellular Trafficking Is Consistent With Distinct Adhesive And Anti-Adhesive Roles In Development, Nicole Lamassa

Dissertations, Theses, and Capstone Projects

Clustered protocadherins (Pcdhs) constitute a family of cell adhesion molecules with approximately 60 Pcdh genes clustered in a 1 MB locus on chromosome 5q31 in humans. The Pcdh gene cluster is subdivided into α, β, and γ subclusters which encode related proteins. Individual neurons activate different subsets of Pcdh-α, Pcdh-β and Pcdh-γ genes by epigenetic mechanisms to generate distinct Pcdh adhesive units expressed by each neuron. This is thought to serve as a “surface barcode” for single-cell identity and synaptic recognition in the nervous system. The actual role for Pcdhs in neural development is still relatively unknown and different roles …

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Cassandra Thompson Shows Danger To Frogs From Pesticide, But Points Out A Solution, Ohio University College Of Arts & Sciences Aug 2022

Cassandra Thompson Shows Danger To Frogs From Pesticide, But Points Out A Solution, Ohio University College Of Arts & Sciences

All Forum Articles

No abstract provided.

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Dynamic Modeling Of Aba-Dependent Expression Of The Arabidopsis Rd29a Gene, Ruth Ndathe, Renee Dale, Naohiro Kato Aug 2022

Dynamic Modeling Of Aba-Dependent Expression Of The Arabidopsis Rd29a Gene, Ruth Ndathe, Renee Dale, Naohiro Kato

Faculty Publications

The abscisic acid (ABA) signaling pathway is the key defense mechanism against drought stress in plants. In the pathway, signal transduction among four core proteins, pyrabactin resistance (PYR), protein phosphatase 2C (PP2C), sucrose-non-fermenting-1-related protein kinase 2 (SnRK2), and ABRE binding factor (ABF) leads to altered gene expression kinetics that is driven by an ABA-responsive element (ABRE). A most recent and comprehensive study provided data suggesting that ABA alters the expression kinetics in over 6,500 genes through the ABF-ABRE associations in Arabidopsis. Of these genes, termed ABA gene regulatory network (GRN), over 50% contain a single ABRE within 4 kb of …

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Bone Marrow Endothelial Cells Increase Prostate Cancer Cell Apoptosis In 3d Triculture Model Of Reactive Stroma, Lindsey K Sablatura, Tristen V Tellman, Aemin Kim, Mary C Farach-Carson Aug 2022

Bone Marrow Endothelial Cells Increase Prostate Cancer Cell Apoptosis In 3d Triculture Model Of Reactive Stroma, Lindsey K Sablatura, Tristen V Tellman, Aemin Kim, Mary C Farach-Carson

Faculty, Staff and Student Publications

The bone marrow tumor microenvironment (BMTE) is a complex network of cells, extracellular matrix, and sequestered signaling factors that initially act as a hostile environment for disseminating tumor cells (DTCs) from the cancerous prostate. Three-dimensional (3D) culture systems offer an opportunity to better model these complex interactions in reactive stroma, providing contextual behaviors for cancer cells, stromal cells, and endothelial cells. Using a new system designed for the triculture of osteoblastic prostate cancer (PCa) cells, stromal cells, and microvascular endothelial cells, we uncovered a context-specific pro-apoptotic effect of endothelial cells of the bone marrow different from those derived from the …

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