Digital Commons Network^™

Mica-G129r: A Bifunctional Fusion Protein Bridging Natural Killer Cells And Prlr-Positive Breast Cancer Cells, Hui Ding

All Dissertations

Breast cancer is the most common diagnosed and deathly cancer in women all over the world. Besides the conventional cancer therapy, based on the receptors expressed in breast cancer, hormone therapy targeting estrogen receptors (ER) and progesterone receptors (PR), and targeted therapy using antibodies or inhibitors targeting human epidermal growth factor receptor 2 (HER2) are the common and standard treatments for breast cancer. However, breast cancer is a highly heterogeneous disease. About 15-20% of breast cancers do not significantly express the three receptors, which are classified as the triple-negative breast cancer and the most dangerous type of breast cancer because …

Uav-Assisted Water Quality Monitoring, Cengiz Koparan

All Dissertations

Water quality assessment for the management of water resources requires the collection of water samples for physical, chemical, and biological analysis. It is essential to reduce the cost of water quality monitoring by minimizing the number of grab samples and to reduce the sampling time by rapidly accessing the sampling points. Adaptive, remote, and smart water sampling systems can provide more effective water quality monitoring programs. An adaptive water sampling system with an unmanned aerial vehicle integrated with sensor nodes was developed and tested in this research. Individual phases of this research were; in-situ water quality measurements with a UAV-integrated …

An Integrated Developmental Model And Measure Of Intercultural Competence, Natasha S. Dumerville

Dissertations, 2020-current

This study presents a synthesized model of intercultural competence, the Integrated Developmental Model of Intercultural Competence (IDMIC), based on six existing constructs and models of intercultural competence commonly used in postsecondary education. The IDMIC Index is a scenario-based instrument designed to measure intercultural competence as depicted by the developmental model. Undergraduate and graduate students were surveyed during the Spring 2019 semester. Data was collected and analyzed using quantitative techniques. Results of data analyses did not provide evidence to support the hypothesized unidimensional structure of the IDMIC Index; however, there was evidence to support the measurement reliability and validity of the …

Pragmatic Language And Behavioral And Emotional Functioning- A Systematic Review: Implications For Research And Interprofessional Practice, Erica Pritzker

Dissertations, 2020-current

Pragmatic language, or social communication, develops throughout childhood and adolescence. Deficits in pragmatic language ability have been found to impact social, emotional, and behavioral functioning in this population. This association has been found across a number of diagnostic presentations including autism spectrum disorder, specific language impairment, attention deficit-hyperactivity disorder, conduct disorder, and oppositional defiant disorder. This study utilized a systematic review methodology with an interprofessional approach, to explore the current literature for evidence of interventions targeting pragmatic language positively impacting emotional and behavioral outcomes in children and adolescents across a range of diagnoses and across multiple disciplines. Five interventions met …

Metagenomic, Viral And Host Genetic Analyses Of Congenital Tremor In Pigs, Kylee Marie Sutton

School of Biological Sciences: Dissertations, Theses, and Student Research

The Pestivirus genus contains several viral species having a major impact on the livestock species. While there were only four major pestiviral species for a time, recent metagenomic sequencing approaches identified additional species, such as atypical porcine pestivirus (APPV). Congenital tremor was first identified almost a hundred years ago and since still has an impact on swine health. There are two main types of congenital tremor, type A and B, with type A congenital tremor further subcategorized based on causative agent. Until recently, type A-II congenital tremor did not have a known cause. Recent viral sequencing of affected samples, including …

3-Dimensional Carbon Micro-Electro Mechanical System (Mems) Electrode For Potential Dielectrophoretic Hepatic Cell Patterning Application, Wan Yahya Wan Nurlina

Student Works (2020-2029)

The maintenance of liver tissue unique pattern remains a great challenge in the generation of functional engineered liver tissue in vitro. This thesis presents a carbon dielectrophoresis (DEP) based cell patterning for generating hepatic cell constructs, mimicking biological hepatic lobule. A new design of electrode named interdigitated radiating-strips electrode (IRSE) was simulated and optimized using COMSOL Multiphysics 4.2a. The simulation result proved that IRSE is capable to provide uniform distribution of electric field for generating three-dimensional (3D) DEP force. The use of carbon electrodes has been an alternative to traditional metal electrodes and insulator structures for DEP applications since more …

Breeding And Conservation Ecology Of Asian Hornbills (Aves: Bucerotidae) In Kinabatangan, Sabah, Kirpal Singh Ravinder Kaur

Student Works (2020-2029)

Eight species of Asian hornbills persist in the Kinabatangan, Sabah. These are the critically endangered Helmeted hornbill (Rhinoplax vigil), endangered Wrinkled hornbill (Rhabdotorrhinus corrugatus) and White-crowned hornbill (Berenicornis comatus), three vulnerable species Rhinoceros hornbill (Buceros rhinoceros), Black hornbill (Anthracoceros malayanus) and Wreathed hornbill (Rhyticeros undulatus), the near threatened Bushy-crested hornbill (Anorrhinus galeritus) and the least concern Oriental Pied hornbill (Anthracoceros albirostris convexus). Hornbills are mainly frugivorous and they are known as secondary cavity-nesting birds. In Kinabatangan, the hornbill populations have been declining over the past few decades. Past timber extraction has left behind highly degraded forest patches in the Kinabatangan …

Enhancement Of Graphene Biocompatibility As A Potential Nano-Carrier For Drug Delivery Applications Using Natural Deep Eutectic Solvent, Zainal Abidin Mohamad Hamdi

Student Works (2020-2029)

Graphene has attracted massive interest in numerous biomedical applications such as anti-cancer therapy, drug delivery, bio-imaging and gene delivery. Therefore, it is important to ensure that graphene is nontoxic, and that its cellular biological behavior is safe and biocompatible. Herein, a new route was used to enhance the biocompatibility of graphene as a nano-carrier for potential drug delivery applications, using different compositions of natural deep eutectic solvents (DESs) as functionalizing agents, owing to their capability to introduce various functional groups and surface modifications. To meet this end, eight different combinations of binary and ternary DESs were synthesized using choline chloride …

Molecular Characterisation Of Hsp70 Gene Expression, Histopathology And Immune System Of Snakehead Fish, Channa Striata, Under Temperature And Bacterial Stress, Eid Elhussein Ihlam Ibrahim

Student Works (2020-2029)

Snakeheads are air-breathing freshwater fishes containing two genera, Channa (Asia) and Parachanna (Africa). The Asian genus is dominated by Channa striata which is found in southern and Southeastern parts of the continent. In this research, environmental and bacteria stressor to Channa striata were investigated. HSP70 gene was studied as an environmental stress gene (ChHSP70). Results showed a cDNA sequence of the gene to be (~918bp). It was also shown the gene is highly similar to that of other fish species. Constructing a phylogenetic tree of the gene across vertebrate species revealed six main clusters; same class remained conserved by showing …

Population Status, Threats, And Conservation Of Preuss's Red Colobus (Piliocolobus Preussi) And Other Diurnal Primates In The Ndokbou Forest, Littoral Region, Cameroon, Ruth Bowers-Sword

Masters Theses, 2020-current

The Ebo-Makombe-Ndokbou forest block in southwest Cameroon lies within the Gulf of Guinea biodiversity hotspot, characterized by extremely high levels of species richness and endemism, including those of primates. These forests may contain one of the last populations of the Critically Endangered Preuss’s red colobus monkey (Piliocolobus preussi; PRC), which is found only in southeastern Nigeria and western Cameroon. Gun hunting for bushmeat and habitat loss and degradation from logging and agriculture are the main threats to PRC. The conservation status of PRC and other primates in the Ndokbou forest are largely unknown, with most regional research efforts occurring in …

Embryonic Exposure To The Synthetic-Progesterone Levonorgestrel (Lng) Results In Hyperactive Behavior In Zebrafish (Danio Rerio), Austin D. Fuentes

Theses and Dissertations

Exposure to endocrine-disrupting chemicals has been associated with an increased risk of anxiety-like behavior at various life stages. Levonorgestrel (LNG), a synthetic contraceptive, could potentially alter steroidal regulated brain development based on the findings of this thesis. In-silico measurements were used for comparing LNG, which had been found in surface water, to chemical databases to predict the bioavailability, half-life, and estrogen binding potential. Zebrafish (Danio rerio) for illuminating the effects of LNG exposure during early zebrafish embryonic development, similar to fetal development, on behavior was investigated. Our data suggests exposure in a dose-dependent manner of LNG can potentially …

Influence Of Landscape Factors On Wildlife Presence And Road Mitigation Structure Performance, Taylor M. Hopkins

Theses and Dissertations

There are roughly 80 ocelots (Leopardus pardalis) remaining in the United States, with the entire population constrained to south Texas, with roadkill being a predominant source of mortality. To prevent additional roadkill and maintain wildlife movement, Texas Department of Transportation constructed 11.9 kilometers of wildlife exclusion fencing, 5 wildlife crossing structures (WCS), and 18 wildlife guards on State Highway 100. This thesis focused on determining the effort required for a control-impact monitoring study, the influence of biotic and abiotic factors around the roadway on wildlife presence, and the performance of mitigation structures and the road mitigation corridor. This …

Effects Of Char On Nitrogen Management In Agricultural Soils Of Semi-Arid Western Nebraska, Dinesh Panday

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Soils in western Nebraska are characterized by low soil organic C due to semi-arid environment in the region and further aggravated by disruption of soil aggregates and rapid C decomposition from intensive tillage, erosion, and frequent droughts. Proper management of soil C may improve soil properties, reduce N losses, and subsequently improve crop yields in this low C soil and low moisture condition. This dissertation focuses on C-rich coal char (henceforth “char”) as a potential strategy to overcome the existing problem of low C in semi-arid region. Char is an industrial by-product, resulting from inefficient coal burning during sugar beet …

A Case Study Of Civil War Environmental And Medical History Through The Disease Seasoning Of The 58th North Carolina Infantry Regiment In East Tennessee, Ashlie Richard

Electronic Theses and Dissertations

This thesis is a case study aimed at a key argument in the emerging field of Civil War medical and environmental history. While historians have long acknowledged disease as a major killer during the Civil War, only recently have environmental and medical historians turned their collective attentions to unpacking the complex interconnections of disease, environmental conditions, and culture. By examining the 58^th North Carolina Infantry Regiment from the mountains of western North Carolina, this thesis asserts that the combined role of the disease environment and conditions in military camps created the massive outbreaks of disease that characterized the seasoning …

Congruence And Temporal Variation Of Floral Visitation And Pollen Transport Networks In Southern Appalachia, Daniel A. Barker

Electronic Theses and Dissertations

Observation of floral visitation is an accepted method to describe plant-pollinator interactions despite potential biases. Collecting pollen from pollinators offers new insights on the structure and function of plant-pollinator communities. Furthermore, the strength and frequency of plant-pollinator interactions can vary across temporal scales. However, within-season and within-day (morning vs. evening) variation in plant-pollinator networks has been little studied. By evaluating variation in network structure across these biologically relevant time scales, we will gain a better understanding of the factors that shape plant-pollinator communities. The objectives of this study are to 1) Compare the structure of plant-pollinator networks built on floral …

Use Of Self-Organizing Maps To Study Sex- And Speed-Dependent Changes In Running Biomechanics, Marwan Mahmoud A Aljohani, Kristof Kipp

Exercise Science Faculty Research and Publications

Background

Up to 79% of runners get injured every year, with higher rates of injuries occurring in females than males. A self-organizing map (SOM) is a type of artificial neural network that can be used to inspect large datasets and study coordination patterns. The purpose of this study was to use an SOM to study the effects of sex and speed on biomechanical coordination patterns.

Method

Thirty-two healthy runners ran on an instrumented treadmill at their long slow distance speed (LSD) and at speed 30% faster (LSD + 30%). Vertical ground reaction force (vGRF), vertical tibial acceleration, step parameters, electromyograms …

The Inhibitory Effects Of An Antimicrobial Gel On The Staphylococcus Species, Mara Trinkle

Undergraduate Honors Theses

The prevalence of antibiotic resistant bacteria has made the choices for topical treatments for patients who experience burns wounds extremely limited. The Staphylococcus genus is naturally occurring in and on the human body but can become harmful once it enters the bloodstream. A novel antimicrobial gel has been shown by our laboratory to inhibit both the planktonic growth and biofilm formation of Staphylococcus aureus in previous studies. The antimicrobial gel is made of seven natural compounds including antioxidants (vitamin C and E). We wanted to examine the effects of the antimicrobial gel on numerous other Staphylococcal species because it is …

Silencing Innovation: The Patent Eligibility Of Sirna Therapeutics, Alexander M. Walker

Minnesota Journal of Law, Science & Technology

No abstract provided.

Parkes Weber Syndrome Associated With Two Somatic Pathogenic Variants In Rasa1, Josue A. Flores Daboub, Johanes F. Grimmer, Alice Frigerio, Whitney Wooderchak-Donahue, Ryan Arnold, Jeff Szymanski, Nicola Longo, Pinar Bayrak-Toydemir

Open Access Publications

Parkes Weber syndrome is associated with autosomal dominant inheritance, caused by germline heterozygous inactivating changes in the

Deconvolving The Contributions Of Cell-Type Heterogeneity On Cortical Gene Expression, Ellis Patrick, Mariko Taga, Ayla Ergun, Bernard Ng, William Casazza, Maria Cimpean, Christina Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi

Open Access Publications

Complexity of cell-type composition has created much skepticism surrounding the interpretation of bulk tissue transcriptomic studies. Recent studies have shown that deconvolution algorithms can be applied to computationally estimate cell-type proportions from gene expression data of bulk blood samples, but their performance when applied to brain tissue is unclear. Here, we have generated an immunohistochemistry (IHC) dataset for five major cell-types from brain tissue of 70 individuals, who also have bulk cortical gene expression data. With the IHC data as the benchmark, this resource enables quantitative assessment of deconvolution algorithms for brain tissue. We apply existing deconvolution algorithms to brain …

Glycan Cross-Feeding Supports Mutualism Between Fusobacterium And The Vaginal Microbiota, Kavita Agarwal, Lloyd S. Robinson, Somya Aggarwal, Lynne R. Foster, Ariel Hernandez-Leyva, Hueylie Lin, Brett A. Tortelli, Valerie P. O'Brien, Liza Miller, Andrew L. Kau, Hilary Reno, Nicole M. Gilbert, Warren G. Lewis, Amanda L. Lewis

Open Access Publications

Women with bacterial vaginosis (BV), an imbalance of the vaginal microbiome, are more likely to be colonized by potential pathogens such as Fusobacterium nucleatum, a bacterium linked with intrauterine infection and preterm birth. However, the conditions and mechanisms supporting pathogen colonization during vaginal dysbiosis remain obscure. We demonstrate that sialidase activity, a diagnostic feature of BV, promoted F. nucleatum foraging and growth on mammalian sialoglycans, a nutrient resource that was otherwise inaccessible because of the lack of endogenous F. nucleatum sialidase. In mice with sialidase-producing vaginal microbiotas, mutant F. nucleatum unable to consume sialic acids was impaired in vaginal colonization. …

Radiation Causes Tissue Damage By Dysregulating Inflammasome-Gasdermin D Signaling In Both Host And Transplanted Cells, Jianqiu Xiao, Chun Wang, Juo-Chin Yao, Yael Alippe, Tong Yang, Dustin Kress, Kai Sun, Kourtney L. Kostecki, Joseph B. Monahan, Deborah J. Veis, Yousef Abu-Amer, Daniel C. Link, Gabriel Mbalaviele

Open Access Publications

Radiotherapy is a commonly used conditioning regimen for bone marrow transplantation (BMT). Cytotoxicity limits the use of this life-saving therapy, but the underlying mechanisms remain poorly defined. Here, we use the syngeneic mouse BMT model to test the hypothesis that lethal radiation damages tissues, thereby unleashing signals that indiscriminately activate the inflammasome pathways in host and transplanted cells. We find that a clinically relevant high dose of radiation causes severe damage to bones and the spleen through mechanisms involving the NLRP3 and AIM2 inflammasomes but not the NLRC4 inflammasome. Downstream, we demonstrate that gasdermin D (GSDMD), the common effector of …

Postmenopausal Hormone Therapy And Colorectal Cancer Risk By Molecularly Defined Subtypes And Tumor Location, Julia D. Labadie, Yin Cao, Et Al

Open Access Publications

Background: Postmenopausal hormone therapy (HT) is associated with a decreased colorectal cancer (CRC) risk. As CRC is a heterogeneous disease, we evaluated whether the association of HT and CRC differs across etiologically relevant, molecularly defined tumor subtypes and tumor location.

Methods: We pooled data on tumor subtypes (microsatellite instability status, CpG island methylator phenotype status,

Results: Among postmenopausal women, ever HT use was associated with a 38% reduction in overall CRC risk (OR =0.62, 95% CI = 0.56 to 0.69). This association was similar according to microsatellite instability, CpG island methylator phenotype and

Conclusions: We observed a strong inverse association …

The Personality Profile Of Chronic Alcohol Dependent Patients With Comorbid Gambling Disorder Symptoms, Ildikó Kovács, Ildikó Katalin Pribék, Ildikó Demeter, Sándor Rózsa, Zoltán Janka, Zsolt Demetrovics, Bálint Andó

Open Access Publications

BACKGROUND AND AIMS: The importance of personality characteristics in the diagnosis and treatment of gambling disorder (GD) and alcohol use disorder (AUD) is often highlighted in scientific literature. This study aimed to test predictions about the associations of temperament and character in chronic AUD patients with comorbid GD symptoms and without them.

METHODS: Chronic AUD patients enrolled from an inpatient clinic were divided in two groups based on cluster analysis, AUD patients with (AUD + GD group: n = 30) and without (AUD group: n = 68) GD symptoms. Severity of GD symptoms and personality dimensions (Cloninger's Temperament and Character …

Exploring The Relationships Between Mothers' Use Of Food To Soothe, Feeding Type And Mode, Maternal Feeding Style, Infant Behavior, And Infant Weight-Related Outcomes During Early Infancy, Megan K. Hupp

Master's Theses

Rapid infant weight gain (RWG) in the first six months postpartum is a strong predictor for obesity during childhood and adolescence. Although biological factors can influence infant weight gain trajectories, the modifiable factor of parent feeding practices can also have an influence. The use of food to soothe (FTS), or the act of feeding a child when he/she is upset for reasons other than hunger, has been associated with unhealthy eating behaviors and less-favorable weight outcomes in children and older infants. However, limited studies have explored the use of FTS during early infancy before the introduction of solids foods. The …

Lipid Quantification And Cryopreservation Of In Vitro Produced Jersey Cattle Embryos, Katherine A. Rhodes-Long

Master's Theses

Cryopreservation of in vivo derived Jersey bovine embryos have resulted in a 10% lower pregnancy rate compared to other dairy breeds. Poor embryo survival after cryopreservation has been partially attributed to the high lipid content of Jersey embryos. In vitro-produced (IVP) bovine embryos have darker cytoplasm than their in vivo-derived counterparts because of higher lipid accumulation. High lipid accumulation is associated with impaired embryo quality. Forskolin is an adenylate cyclase activator that regulates cAMP levels in cells and has been shown to induce lipolysis in IVP embryos. L-carnitine is required for transport of fatty acids from the intermembrane space of …

Antibacterial Coatings Derived From Novel Chemically Responsive Vesicles, Emily B. Mobley

Master's Theses

In order for a drug, or any material used for the purpose of eliciting a change in an organisms’ physical or chemical state, to be effective it must reach the intended target intact and for a sustained rate over time. Drug delivery systems encapsulate a drug to protect it from degradation, prevent side reactions, increase solubility, improve accumulation rates at target sites, and release drugs at a controlled rate. Controlled and sustained release of drugs is achieved by degradation of the carrier triggered by breaking dynamic chemical bonds caused by changes in the chemical environment such as pH or redox …

Quantifying The Ecological Drivers And Impacts Of Parrotfish Predation On Caribbean Corals Communities, Hannah Sima Rempel

Master's Theses

Parrotfishes (Scarinae) are dominant Caribbean herbivores that play an important role in reducing coral-algae competition by grazing algae; yet some species are also occasional coral predators (corallivores) and thereby can have direct negative impacts on coral growth and survivorship. There is concern that parrotfish corallivory may contribute to substantial long-term declines in targeted coral species, particularly in areas with a high biomass of parrotfishes and low cover of corals. However, the capacity of target coral species to heal from parrotfish predation and the ecological drivers of corallivory are poorly understood.

In Chapter 1, we examined the patterns of coral healing …

Gaining Computational Insight Into Psychological Data: Applications Of Machine Learning With Eating Disorders And Autism Spectrum Disorder, Natalia Rosenfield

Computational and Data Sciences (PhD) Dissertations

Over the past 100 years, assessment tools have been developed that allow us to explore mental and behavioral processes that could not be measured before. However, conventional statistical models used for psychological data are lacking in thoroughness and predictability. This provides a perfect opportunity to use machine learning to study the data in a novel way. In this paper, we present examples of using machine learning techniques with data in three areas: eating disorders, body satisfaction, and Autism Spectrum Disorder (ASD). We explore clustering algorithms as well as virtual reality (VR).

Our first study employs the k-means clustering algorithm to …

A Combinatorial Strategy For Overcoming Primary And Acquired Resistance Of Mek Inhibition In Colorectal Cancer, Junjun Chen, Jie Dai, Zhiming Kang, Ting Yang, Qi Zhao, Jinxiu Zheng, Xinxin Zhang, Jisheng Zhang, Jun Xu, Gongqin Sun, Lijun Yang, Tao Yang

Cell and Molecular Biology Faculty Publications

Compared with traditional chemotherapeutic drugs, targeted therapeutic medicine has the advantages of high efficacy and less toxic side effects. However, in clinical practice for treatment of colorectal cancer, the primary and acquired resistance of these medicines limits their effectiveness in targeted therapy, therefore impedes the development of precision medicine and personalized therapy. Currently, there are limited number of drugs for targeted therapy of colorectal cancer, mainly monoclonal antibodies against EGFR or VEGFR inhibitors. Trametinib, a MEK inhibitor, has been applied in melanoma patient successfully, but not been used in clinical treatment of colorectal cancer because of its drug resistance. To …