Digital Commons Network^™

A Parallelized Implementation Of Cut-And-Solve And A Streamlined Mixed-Integer Linear Programming Model For Finding Genetic Patterns Optimally Associated With Complex Diseases, Michael Yip-Hin Chan

Theses

With the advent of genetic sequencing, there was much hope of finding the inherited elements underlying complex diseases, such as late-onset Alzheimer’s disease (AD), but it has been a challenge to fully uncover the necessary information hidden in the data. A likely contributor to this failure is the fact that the pathogenesis of most complex diseases does not involve single markers working alone, but patterns of genetic markers interacting additively or epistatically. But as we move upwards beyond patterns of size two, it quickly becomes computationally infeasible to examine all combinations in the solution space. A common solution to solving …

Hidden Curriculum Awareness: A Comparison Of Engineering Faculty, Graduate Students, And Undergraduates, Idalis Villanueva, Marialuisa Di Stefano, Laura Gelles, Katherine Youmans

Engineering Education Faculty Publications

In order for an engineering academic body (e.g., facultyand students) to navigate their surroundings, they must first become aware of the hidden curriculum around them. Hidden curriculum represents how particular assumptions, values, attitudes, and beliefs about schooling manifests in practice. When understood, these types of lessons or messages allow students, faculty, and staff to more easily navigate the academic and socio-political customs needed for success.

As part of a larger study, a total of 224 participants across 57 engineering programs in the United States and Latin America were asked to comment on a survey that asked respondents about the expectations …

Application Of Glycosyl Imidates And Nitrates In Carbohydrate Synthesis, Tinghua Wang

Dissertations

Carbohydrates are the most abundant molecules among the four essential classes of biomolecules that also include nucleic acids, lipids and proteins. Unlike proteins and nucleic acids, which follow template-driven synthetic pathways, there is no general route to the synthesis of carbohydrates. The stereoselectivity of the formation of O-glycosidic linkages and the regioselectivity of protection and deprotection of specific hydroxyl groups over others represent two of the major challenges in carbohydrate chemistry. This thesis is dedicated to the development of novel strategies for efficient synthesis of carbohydrate building blocks and stereocontrolled glycosylations for step-economy oligosaccharide synthesis. Novel glycosyl donors with difluoro-3H-indol-2-yl …

Tuning The Magnetic Ground State Of Ce1−Xybxrhin5 By Yb Valence Fluctuations, S. Jang, N. Pouse, T. Keiber, Benjamin White, S. M. Dissler, J. W. Lynn, J. C. Collini, M. Janoschek, F. Bridges, M. Brian Maple

All Faculty Scholarship for the College of the Sciences

We characterize the properties of Ce_1−xYb_xRhIn₅ single crystals with 0 ⩽ x ⩽ 1 using measurements of powder x-ray diffraction, energy dispersive x-ray spectroscopy, electrical resistivity, magnetic susceptibility, specific heat, x-ray absorption near edge structure (XANES), and neutron diffraction. The Yb valence v_Yb, calculated from the magnetic susceptibility and measured using XANES, decreases from 3+ at x = 0 to ∼2.1+ at x_act = 0.2, where x_act is the measured Yb concentration. A transition from incommensurate to commensurate antiferromagnetism is observed in neutron diffraction measurements …

Improving Strategic It Investment Decisions By Reducing Information Asymmetry, Thomas P. Stablein

USF Tampa Graduate Theses and Dissertations

The unprecedented ubiquity with which technological advancements, such as blockchain, the Internet of things (IoT), big data, machine learning, and artificial intelligence (AI), are impacting the world has forced large organizations to rethink their information technology roadmaps. Their decisions about how they invest in technology have become more important. It is against this backdrop that companies must decide how much to invest in their aging technologies versus these new potentially transformational ones. A decision is only as good as the information available to the decision-makers when they make it. This research project seeks to understand the effects that information asymmetry …

2018 November 16 - Board Of Trustees Meeting, Board Of Trustees, East Tennessee State University

Board of Trustees Agendas and Minutes

No abstract provided.

Chimes: November 16, 2018, Calvin College

Chimes

President Le Roy turns down pay increases while receiving total compensation at peer median by Yolanda Chow

Calvin sells Ladies Literary Club property by Ellington Smith

"Heralding Africa's Redemption": history professor working on book by Jose M. Hernandez

"The Little Free Library" comes to Commons patio by Annette Espinoza

Collegiate group grows, supports gender diversity in engineering by Michal Rubingh

The Hate U Give, gave us the discussions we needed by Mimi Mutesa

Knights receive individual honors for success by Patrick Roelofs

Philosophy profs discuss Wolterstorff's book on liturgy by Garrett Strpko

Early Detection Of Corrosion Via Hydrogel-Based Spectroelectrochemical Sensors, Capri Ann Price

Dissertations and Theses

The backbone of the industrialized world is comprised of refined, zerovalent metal, a material which thermodynamically favors an oxidative return to more chemically stable states. There are many methods used to slow or delay this process, such as protective coatings, sacrificial anodes, and alloys, but no method can entirely prevent corrosion. This body of work instead proposes detecting the earliest chemical markers of corrosion: that is, metal ions as they solubilize from a metal surface. Such information would allow maintenance personnel to make informed decisions about the necessity or lack thereof of preventive maintenance, and intervene before advanced damage has …

Shear-Force Acoustic Near-Field Microscopy And Its Implementation In The Study Of Confined Mesoscopic Fluids, Theodore Alex Brockman

Dissertations and Theses

The recently developed Shear-Force Acoustic Near-Field Microscope (SANM) is used to investigate the viscoelastic properties of a mesoscopic fluid layer confined between two trapping boundaries, one being a stationary substrate and the other the apex of a laterally oscillating tapered probe. Hardware improvements and evaluation of the SANM-probe robustness will be a major focus of this thesis. The investigation first discusses characterization and recent developments made to the microscope, including: modifications to the sensor head, conditioning of the Nano positioners electrical drive signal, and the assessment of the probe against eventual plastic deformation or compliance against interactions with samples (the …

Vacuum Polarization For Varying Quantum Scalar Field Parameters In Schwarzschild–Anti–De Sitter Spacetime, Cormac Breen, Peter Taylor

Articles

Equipped with new powerful and efficient methods for computing quantum expectation values in static-spherically symmetric spacetimes in arbitrary dimensions, we perform an in-depth investigation of how the quantum vacuum polarization varies with the parameters in the theory. In particular, we compute and compare the vacuum polarization for a quantum scalar field in the Schwarzschild–anti–de Sitter black hole spacetime for a range of values of the field mass and field coupling constant as well as the black hole mass and number of spacetime dimensions. In addition, a new approximation for the vacuum polarization in asymptotically anti–de Sitter black hole spacetimes is …

Bringing Joy To Uninspired Teachers Of Math, Hal Melnick

All Faculty and Staff Papers and Presentations

This publication explores how to inspire teachers to find the joy in math so they can help their students do the same. Through a variety of tools, techniques, and helpful hints, the resource illustrates what high quality math instruction looks like and how teachers can reframe their own thinking about math to create deeper learning opportunities for their students.

Who Needs Data? I’Ve Got Experience!, Dawnie Wolfe Steadman

Human Biology Open Access Pre-Prints

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Using Redundant Primer Sets To Detect Multiple Native Alaskan Fish Species From Environmental Dna, Damian Menning, Trey Simmons, Sandra Talbot

United States National Park Service: Publications

Accurate and timely data regarding freshwater fish communities is important for informed decision-making by local, state, tribal, and federal land and resource managers; however, conducting traditional gear-based fish surveys can be an expensive and time-consuming process, particularly in remote areas, like those that characterize much of Alaska. To help address this challenge, we developed and tested five multi-species environmental DNA (eDNA) primer sets for the simultaneous detection of up to 37 target fish species in a single sample. Using these primer sets can reduce the cost and time needed to perform future studies of fish communities. Our results comparing multiple …

Physical Electronic Properties Of Self-Assembled 2d And 3d Surface Mounted Metal-Organic Frameworks, Radwan Elzein

USF Tampa Graduate Theses and Dissertations

Metal-organic frameworks stand at the frontiers of molecular electronic research because they combine desirable physical properties of organic and inorganic components. They are crystalline porous solids constructed by inorganic nodes coordinated to organic ligands to form 1D, 2D, or 3D structures. They possess unique characteristics such as ultrahigh surface area crystal lattices up to 10000 m² g^-1, and tunable nanoporous sizes ranging from 0.2 to 50 nm. Their unprecedented structural diversity and flexibility beyond solid state materials can lead to unique properties such as tailorable electronic and ionic conductivity which can serve as interesting platforms for a …

Human Body Motions Optimization For Able-Bodied Individuals And Prosthesis Users During Activities Of Daily Living Using A Personalized Robot-Human Model, Dimitrios Menychtas

USF Tampa Graduate Theses and Dissertations

Current clinical practice regarding upper body prosthesis prescription and training is lacking a standarized, quantitative method to evaluate the impact of the prosthetic device. The amputee care team typically uses prior experiences to provide prescription and training customized for each individual. As a result, it is quite challenging to determine the right type and fit of a prosthesis and provide appropriate training to properly utilize it early in the process. It is also very difficult to anticipate expected and undesired compensatory motions due to reduced degrees of freedom of a prosthesis user. In an effort to address this, a tool …

2018 November 16 - Board Of Trustees Academic And Student Affairs Committee, Board Of Trustees, East Tennessee State University

Board of Trustees Agendas and Minutes

No abstract provided.

Duty-Cycle Based Physical Unclonable Functions (Pufs) For Hardware Security Applications, Mahmood Javed Azhar

USF Tampa Graduate Theses and Dissertations

Duty cycle and frequency are important characteristics of periodic signals that are exploited to develop a variety of application circuits in IC design. Controlling the duty cycle and frequency provides a method to develop adaptable circuits for a variety of applications. These applications range from stable on-chip clock generation circuits, on-chip voltage regulation circuits, and Physical unclonable functions for hardware security applications. Ring oscillator circuits that are developed with CMOS inverter circuits provide a simple, versatile flexible method to generated periodic signals on an IC chip. A digitally controlled ring oscillator circuit can be adapted to control its duty cycle …

Predicting Cost Of Care In Total Hip Replacement, Cecily Corrine Froemke, Martin Zwick

Complex Systems Faculty Publications and Presentations

Legislative reforms aimed at slowing growth of US healthcare costs are focused on achieving greater value per dollar. To increase value healthcare providers must not only provide high quality care, but deliver this care at a sustainable cost. Predicting risks that may lead to poor outcomes and higher costs enable providers to augment decision making for optimizing patient care and inform the risk stratification necessary in emerging reimbursement models. Healthcare delivery systems are looking at their high volume service lines and identifying variation in cost and outcomes in order to determine the patient factors that are driving this variation and …

Laboratory Self-Weight Consolidation Testing Of Dredged Material Analyzed Using A One-Dimensional Finite Strain Consolidation Method, Artine Azimi

Master of Science in Civil Engineering Theses

Research has shown that the properties which govern the consolidation of dredged material are best determined using a one-dimensional finite strain consolidation theory. This method requires a complete relationship between void ratio and effective stress for all expected void ratios in a dredged layer, which can be determined from laboratory testing. The United States Army Corps of Engineers (USACE) suggests using a self-weight consolidation test apparatus to obtain void ratio/effective stress conditions for very low effective stresses. In this paper a modified laboratory testing method of a self-weight consolidation test is developed to obtain a range of void ratios and …

Teacher Attitude And Self-Efficacy Differences Regarding English Language Learners And Disabled Learners., Miriam Carballo

USF Tampa Graduate Theses and Dissertations

There has been little research combining both groups of students who were English Language Learners (ELLs) and Exceptional Student Education (ESE) students in relation to teacher attitudes and self-efficacy. The purpose of this study was to compare teacher attitudes and self-efficacy related to instructing either ELLs with or without disabilities in elementary schools

Teachers from six elementary schools in the XYZ Excellence School District participated in a 52-item comprehensive survey. Two questionnaires and the demographic form were combined to create one comprehensive questionnaire totaling 52 questions for the purposes of this study. Teachers were solicited to participate in the study …

Pursuing Resilience Of Coastal Communities Through Sustainable And Integrated Urban Water Management, Pacia Díaz

USF Tampa Graduate Theses and Dissertations

Reliability of water supply in the urban setting has become essential for communities to function and thrive. It is needed for more than mere human consumption and well-being. Although modern cities have water treatment and distribution systems, pressures from urbanization, population growth and the anticipated pressures of climate change are affecting the quality of water supply and the reliability of treatment and distribution systems. There is therefore an urgent need to take appropriate measures to improve the resilience of water supply systems before the impacts are irreversible.

Improving the resilience of water supply systems can be a challenge. In the …

Numerical Modeling Of Concrete Flow In Drilled Shaft, Jesudoss Asirvatham Jeyaraj

USF Tampa Graduate Theses and Dissertations

Drilled shafts are cylindrical, cast-in-place concrete deep foundation elements. Their construction involves drilled excavation of soil or rock using large diameter augers, and placement of the necessary reinforcing steel in the excavation followed by concreting. Where a high water table is encountered, drilling slurry is used to support the excavation walls and concreting is tremie-placed. Even though the history of drilled shaft construction goes back to the 1950s, the occurrence of anomalies persists in the form of soil inclusions, reduction in shaft cross-sectional area and exposure of reinforcement. One of the main reasons for the anomalies is attributed to the …

The Utility Of The Conductivity Mass-Balance Method For Base Flow Separation In Rivers And Streams, Darline Alegria Lott

USF Tampa Graduate Theses and Dissertations

Freshwater for ecosystems, drinking water, and water for various businesses are important resources and those resources are rapidly diminishing globally due to drought and overuse. In order to manage the availability of water for all concerned, good estimates of base flow (groundwater) is required. Base flow, a component of streamflow, is deduced by separating a stream hydrograph into two components, base flow and runoff. There are several techniques used to perform base flow separation; however two techniques are used in this study, chemical mass-balance and analytical methods. This dissertation explains how an analytical technique was derived from a mass-balance method, …

Sorbent Enrichment Performance Of Aromatic Compounds From Diluted Liquid Solution, Le Meng

USF Tampa Graduate Theses and Dissertations

Sorbent enrichment is treated as the extend sample preparing method from liquid extraction. The theories of liquid extraction also extend to sorbent enrichment, which is based on the distribution equilibrium. With the development of advanced materials, sorbents have been improved dramatically in the past twenty years. Nowadays, more and more enrichment performance cannot be explained from the angle of distribution model.

Herein, the sorption model is emphasized in this study. As the majority exist, aromatic compounds are the focused class of analytes. This study analyzed the sorption from two factors, the interaction between adsorbate and sorbent from their aromaticity, and …

Naturalizing Knowledge: The Project Of Evolutionary Epistemology, Dmitriy Cherchenko

University Honors Theses

Traditional epistemology deals with questions about the possible sources of knowledge, the conditions which make a belief an item of knowledge, and the extent to which we can know, as well as the nature of justification and what can make a belief justified for someone. Evolutionary epistemology (EE) breaks from TE to avoid its perceived shortcomings by both dismissing some traditional questions and emphasizing new, related questions that are more readily answerable given what we know about the biology and phylogenetic history of humans. The new questions assume that we are physical, naturally evolved beings and that cognition can be …

Exploring Best Lossy Compression Strategy By Combining Sz With Spatiotemporal Decimation, Xin Liang, Sheng Di, Sihuan Li, Dingwen Tao, Zizhong Chen, Franck Cappello

Computer Science Faculty Research & Creative Works

In today’s extreme-scale scientific simulations, vast volumes of data are being produced such that the data cannot be accommodated by the parallel file system or the data writing/ reading performance will be fairly low because of limited I/O bandwidth. In the past decade, many snapshot-based (or space-based) lossy compressors have been developed, most of which rely on the smoothness of the data in space. However, the simulation data may get more and more complicated in space over time steps, such that the compression ratios decrease significantly. In this paper, we propose a novel, hybrid lossy compression method by leveraging spatiotemporal …

Improving Error-Bounded Compression For Cosmological Simulation, Sihuan Li, Sheng Di, Xin Liang, Zizhong Chen, Franck Cappello

Computer Science Faculty Research & Creative Works

Cosmological simulations may produce extremely large amount of data, such that its successful run depends on large storage capacity and huge I/O bandwidth, especially in the exascale computing scale. Effective error-bounded lossy compressors with both high compression ratios and low data distortion can significantly reduce the total data size while guaranteeing the data valid for post-analysis. In this poster, we propose a novel, efficient compression model for cosmological N-body simulation framework, by combining the advantages of both space-based compression and time-based compression. The evaluation with a well-known cosmological simulation code shows that our proposed solution can get much higher compression …

Search For Long-Lived Particles With Displaced Vertices In Multijet Events In Proton-Proton Collisions At S=13 Tev, Cms Collaboration, J. G. Acosta, S. Oliveros

Faculty and Student Publications (Open Access)

No abstract provided.

Plantes: A Plant Electrophysiological Multi-Source Data Online Analysis And Sharing Platform, Chao Song, Xiao-Huang Qin, Qiao Zhou, Zi-Yang Wang, Wei-He Liu, Jun Li, Guiliang Tang, Et Al.

Michigan Tech Publications, Part 1

At present, plant electrophysiological data volumes and complexity are increasing rapidly. It causes the demand for efficient management of big data, data sharing among research groups, and fast analysis. In this paper, we proposed PlantES (Plant Electrophysiological Data Sharing), a distributed computing-based prototype system that can be used to store, manage, visualize, analyze, and share plant electrophysiological data. We deliberately designed a storage schema to manage the multi-source plant electrophysiological data by integrating distributed storage systems HDFS and HBase to access all kinds of files efficiently. To improve the online analysis efficiency, parallel computing algorithms on Spark were proposed and …

Ensemble Concerts: University And Symphonic Band, November 16, 2018, Marykatheryne E. Kuhne, Zachary A. Taylor, Doug Morin

School of Music Programs

Center for the Performing Arts
November 16, 2018
Friday Evening
8:00 p.m.