Digital Commons Network^™

Biophysical Drivers Of Carbon Dioxide And Methane Fluxes In A Restored Tidal Freshwater Wetland, Ellen Stuart-Haëntjens, Scott C. Neubauer, William Shuart, Christopher M. Gough

Rice Rivers Center Research Symposium

Wetlands store large amounts of carbon (C) in biomass and soils, playing a crucial role in offsetting greenhouse gas (GHG) emissions; however, they also account for 30% of global yearly CH4 emissions. Anthropogenic disturbance has led to the decline of natural wetlands throughout the United States, with a corresponding increase in created and restored wetlands. Studies characterizing biogeochemical processes in restored forested wetlands, particularly those that are both tidal and freshwater, are lacking but essential for informing science- based carbon management.

Identifying Biotic Determinants Of Historic American Eel (Anguilla Rostrata) Distributions, Taylor E. Woods, Daniel J. Mcgarvey

Rice Rivers Center Research Symposium

Traditionally, ecologists studying large scale patterns in species distributions emphasize abiotic variables over biotic interactions. Noting that both abiotic & biotic variables likely determine distributions of all organisms, many ecologists now aim for a more comprehensive view of species distributions, inclusive of both abiotic and biotic components (Soberón 2007).

Somatic Symptom Disorder In Dermatology, James L. Levenson, Aditi A. Sharma, Alex G. Ortega-Loayza

Psychiatry Publications

Somatic symptom disorder (SSD) is defined by the prominence of somatic symptoms associated with abnormal thoughts, feelings, and behaviors related to the symptoms, resulting in significant distress and impairment. Individuals with these disorders are more commonly encountered in primary care and other medical settings, including dermatology practice, than in psychiatric and other mental health settings. What defines the thoughts, feelings, and behaviors as abnormal is that they are excessive, that is, out of proportion to other patients with similar somatic symptoms, and that they result in significant distress and impairment. SSD may occur with or without the presence of a …

Molecular Genetic Influences On Normative And Problematic Alcohol Use In A Population-Based Sample Of College Students, Bradley T. Webb, Alexis C. Edwards, Aaron R. Wolen, Jessica E. Salvatore, Fazil Aliev, Brien P. Riley, Cuie Sun, Vernell S. Williamson, James N. Kitchens, Kimberly Pedersen, Amy Adkins, Megan E. Cooke, Jeanne E. Savage, Zoe Neale, Seung B. Cho, Danielle M. Dick, Kenneth S. Kendler

Psychiatry Publications

Background: Genetic factors impact alcohol use behaviors and these factors may become increasingly evident during emerging adulthood. Examination of the effects of individual variants as well as aggregate genetic variation can clarify mechanisms underlying risk.

Methods: We conducted genome-wide association studies (GWAS) in an ethnically diverse sample of college students for three quantitative outcomes including typical monthly alcohol consumption, alcohol problems, and maximum number of drinks in 24 h. Heritability based on common genetic variants (h2SNP) was assessed. We also evaluated whether risk variants in aggregate were associated with alcohol use outcomes in an independent sample of young …

Electroconvulsive Therapy In Geriatric Patients: A Literature Review And Program Report From Virginia Commonwealth University, Richmond, Virginia, Usa, Andrew D. Snyder, Vasu Venkatachalam, Ananda Pandurangi

Psychiatry Publications

Electroconvulsive therapy (ECT) is an effective therapeutic intervention in the elderly patients with major depression, especially those with psychosis, suicidality, catatonia, nutritional compromise, and resistance to medications. Response rates can be as high as 80%. We present an extensive review of the relevant literature, provide a description of the ECT program at Virginia Commonwealth University in Richmond, Virginia, USA, and present results of our experience with ECT in fifty elderly patients. The treatments were safe, well tolerated, and produced high response rates, variably between 68% and 84%. Patients in the long‑term maintenance ECT program continue to show sustained benefits from …

An Annotated Corpus With Nanomedicine And Pharmacokinetic Parameters, Nastassja Lewinski, Ivan Jimenez, Bridget Mcinnes

Chemical and Life Science Engineering Publications

A vast amount of data on nanomedicines is being generated and published, and natural language processing (NLP) approaches can automate the extraction of unstructured text-based data. Annotated corpora are a key resource for NLP and information extraction methods which employ machine learning. Although corpora are available for pharmaceuticals, resources for nanomedicines and nanotechnology are still limited. To foster nanotechnology text mining (NanoNLP) efforts, we have constructed a corpus of annotated drug product inserts taken from the US Food and Drug Administration’s Drugs@FDA online database. In this work, we present the development of the Engineered Nanomedicine Database corpus to support the …

Quadmutex: Quadratic Driver Mutation Explorer, Bokhari Yahya, Tomasz Jakub Arodz

Computer Science Publications

Background

Somatic mutations accumulate in human cells throughout life. Some may have no adverse consequences, but some of them may lead to cancer. A cancer genome is typically unstable, and thus more mutations can accumulate in the DNA of cancer cells. An ongoing problem is to figure out which mutations are drivers - play a role in oncogenesis, and which are passengers - do not play a role. One way of addressing this question is through inspection of somatic mutations in DNA of cancer samples from a cohort of patients and detection of patterns that differentiate driver from passenger mutations. …

An Integrative In-Silico Approach For Therapeutic Target Identification In The Human Pathogen Corynebacterium Diphtheriae, Syed Babar Jamal, Syed Shah Hassan, Sandeep Tiwari, Marcus V. Viana, Leandro De Jesus Benevides, Asad Ullah, Adrián G. Turjanski, Debmalya Barh, Preetam Ghosh, Daniela Arruda Costa, Artur Silva, Richard Röttger, Jan Baumbach, Vasco A.C. Azevedo

Computer Science Publications

Corynebacterium diphtheriae (Cd) is a Gram-positive human pathogen responsible for diphtheria infection and once regarded for high mortalities worldwide. The fatality gradually decreased with improved living standards and further alleviated when many immunization programs were introduced. However, numerous drug-resistant strains emerged recently that consequently decreased the efficacy of current therapeutics and vaccines, thereby obliging the scientific community to start investigating new therapeutic targets in pathogenic microorganisms. In this study, our contributions include the prediction of modelome of 13 C. diphtheriae strains, using the MHOLline workflow. A set of 463 conserved proteins were identified by combining the results of pangenomics …

Growth No. 16 (2017) - Full Issue

Growth: The Journal of the Association for Christians in Student Development

The full issue of the sixteenth edition of Growth: The Journal of the Association for Christians in Student Development.

Counting Color: Biracial Activism In The Black Lives Matter Era, Maria Hamming

McNair Scholars Journal

No abstract provided.

Managing For Wildlife Habitat On Rangelands In The Great Plains, Maggi Sliwinski, Mark E. Burbach, Larkin Powell, Walter H. Schacht

School of Natural Resources: Documents and Reviews

No abstract provided.

Interactions Between White-Tailed Deer Density And The Composition Of Forest Understories In The Northern United States, Matthew B. Russell, Christopher W. Woodall, Kevin M. Potter, Brian F. Walters, Grant M. Domke, Christopher M. Oswalt

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Forest understories across the northern United States (US) are a complex of tree seedlings, endemic forbs, herbs, shrubs, and introduced plant species within a forest structure defined by tree and forest floor attributes. The substantial increase in white-tailed deer (Odocoileus virginianus Zimmerman) populations over the past decades has resulted in heavy browse pressure in many of these forests. To gain an objective assessment of the role of deer in forested ecosystems, a region-wide forest inventory across the northern US was examined in concert with white-tailed deer density information compiled at broad scales. Results indicate that deer density may be …

Agroforestry: Enhancing Resiliency In U. S. Agricultural Landscapes Under Changing Conditions, Gary Bentrup, Michele M. Schoeneberger, Toral Patel-Weynand

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Agroforestry, the intentional integration of trees and shrubs into crop and animal production systems, is being deployed to enhance productivity, profitability, and environmental stewardship of agricultural operations and lands across the United States. This assessment provides a science-based synthesis on the use of agroforestry for mitigation and adaptation services in the face of climatic variability and change. It provides technical input to land-use sector issues in the National Climate Assessment (NCA) and serves as a framework for including agroforestry systems in agricultural strategies to improve productivity and food security and to build resilience in these landscapes. It also provides follow-up …

Stony Brook Press, V. 38, N. 06, Stony Brook University. Stony Brook Press.

Stony Brook Press

v. 36,n. 4, v.:ill. ; 38 cm (original analog pub.)

Dynamics And Clustering In Locust Hopper Bands, Jialun Zhang

HMC Senior Theses

In recent years, technological advances in animal tracking have renewed interests in collective animal behavior, and in particular, locust swarms. These swarms pose a major threat to agriculture in northern Africa, the Middle East, and other regions. In their early life stages, locusts move in hopper bands, which are huge aggregations traveling on the ground. Our main goal is to understand the underlying mechanisms for the emergence and organization of these bands. We construct an agent-based model that tracks individual locusts and a continuum model that tracks the evolution of locust density. Both these models are motivated by experimental observations …

Getting To The Other Side, Debra Merskin

Animal Sentience

Marino’s comprehensive, detailed, and timely review provides clear evidence of the sentience of chickens and strong support for those wishing to challenge their exclusion from even the limited protections currently accorded to animals grown for food.

Sentience Does Not Require “Higher” Cognition, Giorgio Vallortigara

Animal Sentience

I agree with Marino (2017a,b) that the cognitive capacities of chickens are likely to be the same as those of many others vertebrates. Also, data collected in the young of this precocial species provide rich information about how much cognition can be pre-wired and predisposed in the brain. However, evidence of advanced cognition — in chickens or any other organism — says little about sentience (i.e., feeling). We do not deny sentience in human beings who, because of cognitive deficits, would be incapable of exhibiting some of the cognitive feats of chickens. Moreover, complex problem solving, such as transitive inference, …

Misperceiving And Underestimating The Ubiquitous Chicken, Carrie P. Freeman

Animal Sentience

Marino has provided an accurate and nuanced view about chickens’ complex capabilities as sentient individuals. I explore the implications of these findings for scholars as well as for activists in the protection of farmed animals.

Is Psychological Science Committing “Suicide” By Linguistic Muddling?, Roger K. Thomas

Animal Sentience

Beginning mainly with the “cognitive revolution” in psychology in the latter half of the 20^th century, psychological science has been committing “suicide” slowly via linguistic muddling. Peña-Guzmán’s target article is but one of thousands of cuts contributing to this death by “suicide.” Having said that, given the current state of affairs in animal cognition research, there is much to commend in Peña-Guzmán’s article. I leave that to others, however. This commentary explains how the suicide by muddling of psychological science is happening in general, with the understanding that it applies also to Peña-Guzmán’s target article.

On Assisted Suicide, Clark Glymour

Animal Sentience

What would be the moral implications of the capacity for suicide in nonhuman animals? Humans can be helped to end their lives if they no longer find them bearable. Should captive animals not be given the same possibility?

Centring Fish Agency In Coastal Dam Removal And River Restoration, Caroline Gottschalk Druschke, Emma Lundberg, Ludovic Drapier, Kristen C. Hychka

New Hampshire EPSCoR

This article considers the agentic capacity of fish in dam removal decisions. Pairing new materialist explorations of agency with news media, policy documents, and interviews related to a suite of dam decisions in a New England, USA watershed, we identify the ways that river herring seem constrained through technocratic discourse to particular human-defined roles in dam removal discussions. We suggest, meanwhile, that existing human relationships with salmonids like brook trout might serve as a bridge for public stakeholders and restoration managers to recognise the agentic creativity of fish in dam removal and river restoration decisions.

Group Iv Nociceptors Develop Axonal Chemical Sensitivity During Neuritis And Following Treatment Of The Sciatic Nerve With Vinblastine, Rosann M. Govea, Mary F. Barbe, Geoffrey M. Bove

Biomedical Sciences Faculty Publications

We have previously shown that nerve inflammation (neuritis) and transient vinblastine application lead to axonal mechanical sensitivity in nociceptors innervating deep structures. We have also shown that these treatments reduce axonal transport, and proposed that this leads to functional accumulation of mechanically sensitive channels in the affected part of the axons. While informing the etiology of mechanically induced pain, axonal mechanical sensitivity does not address the common report of ongoing radiating pain during neuritis, which could be secondary to the provocation of axonal chemical sensitivity. We proposed that neuritis and vinblastine application would induce sensitivities to noxious chemicals, and that …

Vestured Pits In Echium (Boraginaceae): Island Woodiness Revisited, Sherwin Carlquist

Aliso: A Journal of Systematic and Floristic Botany

Vestured pits are present on pits of secondary xylem vessels of all studied Echium species, roots as well as stems. Variations in vesturing presence do occur in the genus (across wide circular pit cavities; along margins of elliptical pit apertures; aggregated to various degrees; variously abundant), but these are difficult to define precisely and are related primarily to organography and ecology rather than to the taxonomic system. The Macaronesian species have been reported to form a single clade. Wood anatomical features other than vesturing are also closely keyed to species ecology and, in particular subclades, growth forms. Woodiness, exemplified by …

Community Structure And Demography In A Saline Pan-Dune Mosaic In The Western Mojave Desert, M. Rasoul Sharifi, William N. Brostoff, Philip W. Rundel

Aliso: A Journal of Systematic and Floristic Botany

A unique saline ecological system formed by an extensive mosaic of small clay pans and low stable dunes exists within Edwards Air Force Base in the western Mojave Desert of California. This ecosystem lies between the large Rosamond and Rogers dry lakes on the old Pleistocene lakebed of Lake Thompson. Plant communities on the low and relatively stable dunes were broadly classed as saltbush scrub, with a total canopy cover of 30–36%. Atriplex confertifolia was the typical dominant, with Ericameria nauseosa as an important associate. Taller dunes of younger age and less saline soils had similar plant cover, but a …

Richness And Current Status Of Gymnosperm Communities In Aguascalientes, Mexico, María Elena Siqueiros-Delgado, Rebecca S. Miguel, José A. Rodríguez-Avalos, Julio Martínez-Ramírez, José C. Sierra-Muñoz

Aliso: A Journal of Systematic and Floristic Botany

The gymnosperm diversity of Aguascalientes, Mexico, is presented. Fifteen species from five genera and three families are reported, two of Coniferales (Cupressaceae and Pinaceae) and one of Gnetales (Ephedraceae). Pinus is the most diverse and abundant genus with seven species. The most abundant species is P. teocote, while P. strobiformis is the scarcest. Juniperus is the next most diverse genus, represented by four species, with J. deppeana the most abundant and J. durangensis the scarcest. Cupressus lusitanica, Taxodium mucronatum and Ephedra compacta are each the sole representatives of their genera. Most conifers occupy the mountainous part of the …

The Potential Of Epigenetics Research To Transform Conceptions Of Phenotype Development, David S. Moore

Pitzer Faculty Publications and Research

Epigenetics remains an exciting subdiscipline of biology, generating discoveries and insights about development. Because epigenetic phenomena can draw attention to the dynamic, interactional, and probabilistic nature of phenotype development, epigenetics research could hasten the demise of both nature-nurture debates and reductionist, genetically determinist perspectives on phenotype development. However, new data alone will not inevitably transform conceptualizations of phenotype origins, because it remains possible to assimilate epigenetic phenomena into traditional conceptual frameworks; epigenetic discoveries could even strengthen biologically determinist conclusions if traditional conceptualizations are retained. Although epigenetics will not force conceptual transformation, epigenetics research encourages the dismissal of the nature-nurture dichotomy …

Shinrin-Yoku (Forest Bathing) And Nature Therapy: A State-Of-The-Art Review, Dr. Margaret M. Hansen, Reo Jones, Kirsten Tocchini

Nursing and Health Professions Faculty Research and Publications

Background: Current literature supports the comprehensive health benefits of exposure to nature and green environments on human systems. The aim of this state-of-the-art review is to elucidate empirical research conducted on the physiological and psychological effects of Shinrin-Yoku (or Forest Bathing) in transcontinental Japan and China. Furthermore, we aim to encourage healthcare professionals to conduct longitudinal research in Western cultures regarding the clinically therapeutic effects of Shinrin-Yoku and, for healthcare providers/students to consider practicing Shinrin-Yoku to decrease undue stress and potential burnout. Methods: A thorough review was conducted to identify research published with an initial open date range and then …

Communication Or Piracy? Library Values, Copyright, And Cloud Computing, Justin White

University Library Publications and Presentations

Advances in computing in the twenty-first century has shifted the late twentieth century model of computers that act as independent processing machines, back to the more archaic model of terminals that have processing done by a larger, centralized network. This shift has come about because of the growth of Cloud computing, which, for this chapter, will be defined as a model of computing as infrastructure. Whether the drive to Cloud solutions was driven by the limited resources of mobile devices, or the need to collectively share and store data across multiple platforms, or even a desire to offload software itself …

Development Of Cellular Assays To Monitor Enzymatic And Biological Activity Of Cd73: A Key Modulator Of Anti-Tumor Immune Response, Alexandra Fanuka

Graduate School of Biomedical Sciences Theses and Dissertations

Ecto-5’-nucleotidase, known as CD73, is an extracellular enzyme that converts adenosine monophosphate (AMP) to adenosine and has recently been identified as a potential drug target for cancer immunotherapy. Its immunosuppressive effects, mediated by the activity of adenosine, are associated with higher rates of tumor invasion and metastasis, as well as poorer prognoses overall in many cancer types. CD73 is often co-expressed with ectonucleoside triphosphate diphosphohydrolase-1 (CD39), which catalyzes the conversion of adenosine triphosphate (ATP) to adenosine diphosphate (ADP), and ADP to AMP on the surface of tumor cells. Dual expression further propagates immunosuppressive effects of adenosine in the tumor microenvironment. …

Shape Indexes For Semi-Automated Detection Of Windbreaks In Thematic Tree Cover Maps From The Central United States, Greg C. Liknes, Dacia M. Meneguzzo, Todd A. Kellerman

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Windbreaks are an important ecological resource across the large expanse of agricultural land in the central United States and are often planted in straight-line or L-shaped configurations to serve specific functions. As high-resolution (i.e., <5 m) land cover data sets become more available for these areas, semi-or fully-automated methods for distinguishing windbreaks from other patches of trees are needed for use with thematic raster data sets. To address this need, we created three shape indexes: a morphology-based index that we have named the Straight and Narrow Feature Index (SNFI), a windbreak sinuosity index, and an area index indicating the occupied fractional area of a bounding box. The indexes were tested in two study areas: (1) a riparian area dominated by sinuous bands of trees but mixed with row crop agriculture and (2) an agricultural area with a mix of straight-line and L-shaped windbreaks. In the riparian area, a Kruskall–Wallis rank sum test indicated class differences for all three indexes, and pairwise comparisons indicate windbreaks and riparian trees are separable using any of the three indexes. SNFI also produced significant differences between windbreaks oriented in different directions (east–west vs. north–south). In the agricultural area, the Kruskall–Wallis rank sum test indicated differences between classes for all three indexes, and pairwise comparisons show that all class pairs have significant differences for at least one index, with the exception of L-shaped windbreaks vs. non-windbreak tree patches. We also used classification trees to objectively assign representative samples of tree patches to classes using both single indexes and multiple indexes. Classes were correctly assigned for more than 90% of the samples in both the riparian and agricultural study areas. In the riparian area, combining indexes did not improve accuracy compared to using SNFI alone, whereas in the agricultural area, combining the three indexes produced the best result. Thematic data sets derived from high-resolution imagery are becoming more available, and extracting useful information can be a challenge, partly due to the large amount of data to assess. Calculating the three shape indexes presented can assist with efficient identification of candidate windbreaks and as such, hold good promise for value-added analysis of tree function in the central United States.