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Hydrology And Macroinvertebrates As Biological Indicators- An Integrated Study Of The Río Zamora Watershed, Loja, Ecuador, Isabel Ryde

Independent Study Project (ISP) Collection

Water quality and access is under grave threat in Ecuador, yet remains poorly studied. Macroinvertebrates were used as biological indicators to study water quality around Reserva Natural Madrigal del Podocarpus, Loja Province, Ecuador. Data on macroinvertebrates was combined with hydrologic measurements of stream functions. Macroinvertebrate sampling was conducted from 6 sites within the Upper Río Zamora watershed. Geologic outcrops were observed along several roadcuts and stream banks. Hydrologic data was collected by measuring discharge, elevation change, and finding the highest permanent spring. The EPT index (number of EPT individuals and percentage of EPT individuals) and the BMWP/Colombia Index for macroinvertebrates …

Hiv Harm Reduction Methods: A Comparison Between Switzerland And The United States, Erin Major

Independent Study Project (ISP) Collection

This paper explores the connections between harm reduction methods and the prevalence of HIV/AIDS in Switzerland and the United States of America, focusing primarily on the harm reduction methods of needle exchange programs, safe drug consumption spaces, and sex education. While these two countries are largely similar in their culture and geopolitical approaches, there are some key differences in how HIV is approached in each. Switzerland’s somewhat unique approach with relaxed drug policies and more pragmatic, harm reduction based response to the AIDS epidemic sets a model framework for other countries to follow, with comparatively widespread use of needle exchange …

Distributions Of Polychaetes As A Function Of Sediment Composition In A Subtropical Lagoon, Anthony William Cox

Theses and Dissertations

Fine-grained organic-rich sediments (FGORS) in the Indian River Lagoon (IRL), Florida, the human activities and nutrient inputs and have a varied composition, including water content, silt-clay content, and organic matter. When these constituents reach, by weight, 75%, 60% dry, and 10% dry, respectively, this is sometimes referred to as IRL “muck”. Many polychaetes inhabit the benthic sediments of estuaries and must tolerate various degrees of FGORS. The Cox IRL Muck Index (CMI) is proposed as a mechanism for determining the organic sediment tolerances of infaunal species in a simple and direct manner. IRL muck will have a minimum CMI of …

An Unparalleled Opportunity For An Important Ecological Study, L. David Mech, Shannon M. Barber-Meyer, Juan Carlos Blanco, Luigi Boitani, Ludwig Carbyn, Glenn Delgiudice, Steven H. Fritts, Djuro Huber, Olof Liberg, Brent Patterson, Richard R. Thiel

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Wolves (Canis lupus) and moose (Alces americanus) have been studied since 1958 on 540-squarekilometer Isle Royale National Park, in Lake Superior. Wolves arrived there across the ice around 1949, and the population once increased to about 50, averaging about 25 annually (Mech 1966, Jordan et al. 1967, Vucetich and Peterson 2009). However, for various reasons, wolf numbers there have now dwindled to 2 nonbreeders, and the US National Park Service has proposed reintroducing 20–30 wolves over 3 years (National Park Service 2016). This situation offers an unparalleled opportunity to promote science-based management of this unique national park. …

Differential Toxicity And Venom Gland Gene Expression In Centruroides Vittatus, Thomas C. Mcelroy, C. Neal Mcreynolds, Alyssa Gulledge, Kelci R. Knight, Whitney E. Smith, Eric A. Albrecht

Faculty Articles

Variation in venom toxicity and composition exists in many species. In this study, venom potency and venom gland gene expression was evaluated in Centruroides vittatus, size class I-II (immature) and size class IV (adults/penultimate instars) size classes. Venom toxicity was evaluated by probit analysis and returned ED50 values of 50.1 μg/g for class IV compared to 134.2 μg/g for class I-II 24 hours post injection, suggesting size class IV was 2.7 fold more potent. Next generation sequencing (NGS and qPCR were used to characterize venom gland gene expression. NGS data was assembled into 36,795 contigs, and annotated using BLASTx …

Assessment Of Intra And Interregional Genetic Variation In The Eastern Red-Backed Salamander, Plethodon Cinereus, Via Analysis Of Novel Microsatellite Markers, Alexander C. Cameron, Jeffry J. Anderson, Robert B. Page

Biology Faculty Publications (Archived)

The red-backed salamander (Plethodon cinereus) has long-served as a model system in ecology, evolution, and behavior, and studies surveying molecular variation in this species have become increasingly common over the past decade. However, difficulties are commonly encountered when extending microsatellite markers to populations that are unstudied from a genetic perspective due to high levels of genetic differentiation across this species’ range. To ameliorate this issue, we used 454 pyrosequencing to identify hundreds of microsatellite loci. We then screened 40 of our top candidate loci in populations in Virginia, Pennsylvania, and Ohio—including an isolated island population ~ 4.5 km off the …

A Microsatellite Baseline For Genetic Stock Identification Of European Atlantic Salmon (Salmo Salar L.), John Gilbey, Jamie Coughlan, Vidar Wennevik, P Prodohl, Jamie R. Stevens, De Leaniz C Garcia, Dennis Ensing, Eef Cauwelier, Corrine Cherbonnel, Sofia Consuegra, Mark W. Coulson, Tom F. Cross, Walter Crozier, Eileen Dillane, Jonathan S. Ellis, E Garcia-Vazquez, Andrew M. Griffiths, Sigurdur Gudjonsson, Kjetil Hindar, Sten Karlsson, David Knox, Gonzalo Machado-Schiaffino, Dorte Meldrup, Ee Nielsen, K Olafsson, Craig R. Primmer, Sergey Prusov, Lee Stradmeyer, J-P Vaha, Alexey Je Veselov, Lucy M.I. Webster, Philip Mcginnity, Eric Verspoor

School of Biological and Marine Sciences

No abstract provided.

Physiological Ecology Of Four Endemic Alabama Species And The Exotic Asiatic Weatherfish, Misgurnus Anguillicaudatus (Cantor, 1842), Lindsay M. White, Mark E. Meade, Benjamin A. Staton

Southeastern Fishes Council Proceedings

The occurrence of Asiatic Weatherfish, Misgurnus anguillicaudatus, in Alabama, a state known for its rich biodiversity, has generated concern among conservation managers. The current study used respirometry techniques to investigate the effects of increasing temperature on four native southeastern fishes (one cyprinid, two percids, and one elassomid) and the non-native M. anguillicaudatus. A minimum of five individuals of each species were used, and three experimental temperatures were chosen to represent spring and summer averages of northeast Alabama streams (15, 20, and 25°C). Overall, mean standard metabolic rates (SMRs) for M. anguillicaudatus were low (97.01, 127.75, and 158.50 mg …

Lung Ct Radiomics: An Overview Of Using Images As Data, Samuel Hunt Hawkins

USF Tampa Graduate Theses and Dissertations

Lung cancer is the leading cause of cancer-related death in the United States and worldwide. Early detection of lung cancer can help improve patient outcomes, and survival prediction can inform plans of treatment. By extracting quantitative features from computed tomography scans of lung cancer, predictive models can be built that can achieve both early detection and survival prediction. To build these predictive models, first a detected lung nodule is segmented, then image features are extracted, and finally a model can be built utilizing image features to make predictions. These predictions can help radiologists improve cancer care.

Building predictive models based …

The Social Indicators Final Project Report, Simone Barley-Greenfield

PREP Reports & Publications

New Hampshire’s 1000 square mile coastal zone is showing signs of stress in its rivers, shorelines, and two major estuaries. This stress stems from significant population increases and subsequent development, as well as intensifying weather events coupled with land use policies inadequate to manage the impacts of these anthropogenic and natural stressors.1 To effectively manage this complex social ecological system, the management community must expand its current monitoring efforts. Tracking ecological data only tells half the story; collecting social data sheds light on how people engage coastal ecosystems and highlights values crucial for affecting behavior change. The goal of this …

Does Detection Range Matter For Inferring Social Networks In A Benthic Shark Using Acoustic Telemetry?, Johann Mourier, Nathan Charles Bass, Tristan L. Guttridge, Joanna Day, Culum Brown

Social Behavior Collection

Accurately estimating contacts between animals can be critical in ecological studies such as examining social structure, predator–prey interactions or transmission of information and disease. While biotelemetry has been used successfully for such studies in terrestrial systems, it is still under development in the aquatic environment. Acoustic telemetry represents an attractive tool to investigate spatio-temporal behaviour of marine fish and has recently been suggested for monitoring underwater animal interactions. To evaluate the effectiveness of acoustic telemetry in recording interindividual contacts, we compared co-occurrence matrices deduced from three types of acoustic receivers varying in detection range in a benthic shark species. Our …

A Synergistic Approach For Evaluating Climate Model Output For Ecological Applications, Rachel D. Cavanagh, Eugene J. Murphy, Thomas J. Bracegirdle, John Turner, Cheryl A. Knowland, Stuart P. Corney, Walker O. Smith Jr., Claire M. Waluda, Nadine M. Johnston, Richard G. J. Bellerby, Eileen E. Hofmann

CCPO Publications

Increasing concern about the impacts of climate change on ecosystems is prompting ecologists and ecosystem managers to seek reliable projections of physical drivers of change. The use of global climate models in ecology is growing, although drawing ecologically meaningful conclusions can be problematic. The expertise required to access and interpret output from climate and earth system models is hampering progress in utilizing them most effectively to determine the wider implications of climate change. To address this issue, we present a joint approach between climate scientists and ecologists that explores key challenges and opportunities for progress. As an exemplar, our focus …

Connecting The Dots: Stopover Strategies Of An Intercontinental Migratory Songbird In The Context Of The Annual Cycle, Kristina Paxton, Frank R. Moore

Faculty Publications

The phases of the annual cycle for migratory species are inextricably linked. Yet, less than five percent of ecological studies examine seasonal interactions. In this study, we utilized stable hydrogen isotopes to geographically link individual black-and-white warblers (Mniotilta varia) captured during spring migration with breeding destinations to understand a migrant's stopover strategy in the context of other phases of the annual cycle. We found that stopover strategy is not only a function of a bird's current energetic state, but also the distance remaining to breeding destination and a bird's time-schedule, which has previously been linked to habitat conditions experienced …

Distributive Leadership’S Relationship To Teacher Self-Efficacy: An Ecological Model, Mary Dawson Jacques

All Theses And Dissertations

This ecological study identifies and tests research based constructs of distributive leadership and teacher self-efficacy on the 2012 and 2014 TELL survey using ecological methodology. This includes a confirmatory factor analysis of survey items that best measure distributive leadership and teacher self-efficacy. The overall population mean for participants who agreed or strongly agreed with the survey items was calculated and analyzed. The research focuses on a microsystem analysis, but includes a reflection on the exosystem and an analysis of variance with the macrosystem.

Analyses revealed three major findings. First by calculating the overall population mean of participants who agreed or …

Information In The Ecosystem: Against The “Information Ecosystem”, Timothy B. Norris, Todd Suomela

Copyright, Fair Use, Scholarly Communication, etc.

The “information ecosystem” metaphor is widely used in academic libraries and has become nearly ubiquitous when speaking of the information systems that support scholarly communication and varied forms of data sharing and publication. The trending use of this language arises from non-academic applications — for example in big data (the Hadoop ecosystem) or software development (the node.js ecosystem) — and there remains little critical examination of the use of this metaphor. Indeed, the definition of ecosystem as the set of relations between living organisms and their surrounding non-living environment is apparently not directly a part of the metaphor. This paper …

The Increase In Domestic Violence In Brazil From 2009-2014, Nadia Christina Rodrigues, Gisele O'Dwyer, Monica Kramer Andrade, Matthew B. Flynn, Denise Leite Maia Monteiro, Valeria Teresa Saraiva Lino

Political Science & International Studies: Faculty Publications

In recent decades, the rise violent phenomena in Brazil has reached epidemic proportions. However, the prevalence of domestic violence (DV) across different states in the country is not well established. The objective of this study was to describe the distribution of DV across Brazilian states from 2009 to 2014. An ecological study based on spatial analysis techniques was performed using Brazilian states as geographical units of analysis. A multilevel Poisson model was used to explain the risk of DV in Brazil according to age, sex, period (fixed effects), the Human Developing Index, and the victim’s residence state (random effects). The …

Spatial Soundscape Ecology: Application In A Paleotropical Rainforest, Jack Vanschaik

The Journal of Purdue Undergraduate Research

The world’s biodiversity is declining with much of the decrease attributed to human activity. The paleotropical rainforests of Borneo contribute 10% of the world biodiversity but are at risk of destruction due to logging and other human interests. Soundscape ecology, defi ned as the study of the composition of sounds in an environment, is a new fi eld that offers solutions for assessing biodiversity and disturbance. Spatial dynamics are an important component of an ecosystem, yet the link between spatial dynamics and soundscapes has not yet been studied. It should be possible to assess disturbance of an ecosystem by analyzing …

The Mecoptera Of Michigan, Albert R. Thornhill, James B. Johnson

The Great Lakes Entomologist

(excerpt) To date, no one has published on the Mecoptera of Michigan. A comprehensive taxonomic paper on the Mecoptera of Illinois, by Donald W. Webb, Illinois Natural History Survey, and Norman D. Penny, University of Kansas, is in preparation and will include keys to and descriptions of the midwestern species of Mecoptera. It is hoped that the present paper will supplement the publication by Webb and Penny and enable interested persons in Michigan to easily identify adult Mecoptera.

Approaches For Advancing Scientific Understanding Of Macrosystems, Ofir Levy, Becky A. Ball, Ben Bond-Lamberty, Kendra S. Cheruvelil, Andrew O. Finley, Noah R. Lottig, Surangi W. Punyasena, Jingfeng Xiao, Jizhong Zhou, Lauren B. Buckley, Christopher T. Filstrup, Tim H. Keitt, James R. Kellner, Alan K. Knapp, Andrew D. Richardson, David Tcheng, Michael Toomey, Rodrigo Vargas, James W. Voordeckers, Tyler Wagner

All Materials

The emergence of macrosystems ecology (MSE), which focuses on regional- to continental-scale ecological patterns and processes, builds upon a history of long-term and broad-scale studies in ecology. Scientists face the difficulty of integrating the many elements that make up macrosystems, which consist of hierarchical processes at interacting spatial and temporal scales. Researchers must also identify the most relevant scales and variables to be considered, the required data resources, and the appropriate study design to provide the proper inferences. The large volumes of multi-thematic data often associated with macrosystem studies typically require validation, standardization, and assimilation. Finally, analytical approaches need to …

The Morphology And Histology Of New Sex Pheremone Glands In Male Scorpionflies, Panorpa And Brachypanorpa (Mecoptera: Panorpidae And Panorpodidae), Albert R. Thornhill

The Great Lakes Entomologist

The n~orphology and histology of a previously undescribed sex pheromone gland in male scorpionflies of the genus Panorpa (Mecoptera: Panorpidae) and a morphologically similar gland in Brachypanorpa (Mecoptera: Panorpodidae) are described and discussed. The gland and the associated pheromone dispersing structure consist of an eversible pouch that lies in the ventral part of the male genital bulb at the point where the basistyles diverge. The glandular layer of epithelium is composed of three types of cells that vary in size between species of Panorpa and between Panorpa and Brachyponorpa. It is suggested that the gland may have evolved from …

Stability, Development, And Function Of A Symbiotic Bacterial Community Associated With The Reproductive System Of The Hawaiian Bobtail Squid, Euprymna Scolopes, Allison H. Kerwin

Doctoral Dissertations

Many aquatic organisms deposit their eggs into an environment where successful embryogenesis depends on minimizing biofouling. The female Hawaiian bobtail squid, Euprymna scolopes, harbors a diverse bacterial community within the accessory nidamental gland (ANG), a symbiotic reproductive organ. This community is hypothesized to be environmentally transmitted, and to be deposited from the ANG into the egg jelly coat (JC). Illumina sequencing of the 16S rRNA V4 gene region demonstrated that the ANG bacterial community (n=29) and that of the JC (n=35) were composed primarily of members of the Rhodobacteraceae and Verrucomicrobia, which together comprised on average 86% of …

Examination Of Multidimensional Acculturation Theory And Acculturation Process On Latinas/Os In Communal Recovery Homes, Roberto Lopez Tamayo

College of Science and Health Theses and Dissertations

Disparities in access and utilization of substance abuse treatment (SAT) among Latinas/os, accentuated by the rapid growth of this population are creating a public health issue. Among those in need of SAT, only 7.7% receive treatment and nearly half of these individuals complete SAT or continue their recovery in a controlled environment. Additionally, Latinas/os who complete SAT reported their needs were not met in treatment. Although substance abuse literature has given more consideration to environmental factors and social support in relation to treatment outcomes, current substance abuse models fail to address important contextual and cultural aspects for Latinas/os in recovery. …

Rethinking Urban Green Infrastructure As A Means To Promote Avian Conservation, Allen Lau

Master's Projects and Capstones

There is an under-recognized potential for cities to use urban green infrastructure to contribute to avian biodiversity conservation. At the global scale, climate change and growing urbanization are primary global drivers leading to decline and homogenization in world bird populations. Birds are fundamental and intricate species in ecosystems, and even in urban areas, act as indicator and regulator species contributing to healthy ecosystem function. While many cities have recognized the economic and social benefits associated with green spaces, such as the vast benefits ecosystem services provide to the urban dweller, the use of green spaces to concurrently contribute to avian …

Bibliography Of Published Reports And Articles Related To Hydrological Research On The Sagavanirktok River, Emily Youcha, Horacio Toniolo

WERC Other

Researchers from the Water and Environmental Research Center (WERC), University of Alaska Fairbanks (UAF), are conducting a study of sediment transport conditions along the Sagavanirktok River. This document, as part of the study, provides a compilation of published literature related to the Sagavanirktok River (or adjacent watersheds with similar characteristics) including previous or ongoing hydrological and sedimentological research in the Sagavanirktok River basin. The literature referenced includes research on climate change, hydrology, sedimentology, permafrost and soils, meteorology, field data, satellite or aerial imagery, geophysics, modeling, water quality, and geochemistry in the Sagavanirktok River basin.

Advancing Our Understanding Of The Edwardsiella, Stephen Ralph Reichley

Theses and Dissertations

Diseases caused by Edwardsiella spp. are responsible for significant losses in wild and cultured fishes around the world. Historically, Edwardsiella tarda has been considered the most phenotypically and genotypically heterogeneous member of the genus. Investigations into intraspecific variability of E. tarda demonstrated isolates previously classified as E. tarda actually represent three genetically distinct yet phenotypically ambiguous groups, leading to the adoption of E. piscicida and E. anguillarum as discrete taxa. Current genomic investigations have demonstrated significant differences between these organisms. To this end, real-time quantitative PCR assays were developed to quickly and accurately detect the pathogens in pond water, fish …

A Dynamic Landsat Derived Normalized Difference Vegetation Index (Ndvi) Product For The Conterminous United States, Nathaniel P. Robinson, Brady W. Allred, Matthew O. Jones, Alvaro Moreno, John S. Kimball, David E. Naugle, Tyler A. Erickson, Andrew D. Richardson

Numerical Terradynamic Simulation Group Publications

Satellite derived vegetation indices (VIs) are broadly used in ecological research, ecosystem modeling, and land surface monitoring. The Normalized Difference Vegetation Index (NDVI), perhaps the most utilized VI, has countless applications across ecology, forestry, agriculture, wildlife, biodiversity, and other disciplines. Calculating satellite derived NDVI is not always straight-forward, however, as satellite remote sensing datasets are inherently noisy due to cloud and atmospheric contamination, data processing failures, and instrument malfunction. Readily available NDVI products that account for these complexities are generally at coarse resolution; high resolution NDVI datasets are not conveniently accessible and developing them often presents numerous technical and methodological …

Colonizing Opportunistic Pathogens (Cops): The Beasts In All Of Us., Lance B Price, Bruce A Hungate, Benjamin J Koch, Gregg S Davis, Cindy M Liu

Environmental and Occupational Health Faculty Publications

Colonizing opportunistic pathogens (COPs) are microbes that asymptomatically colonize the human body and, when the conditions are right, can cause infections. Their ability to persist indefinitely and to be transmitted without detection [1] gives COPs a unique epidemiology that warrants special consideration. There are examples of COPs among bacteria, fungi (e.g., Candida albicans [2]), protozoa (e.g., Blastocystis [3, 4]), and viruses (e.g., Rhinovirus [5]), but bacterial COPs are of particular relevance because of their major contribution to today’s antibiotic resistance crisis. The COPs include a long list of notorious bacteria that …

Colonizing Opportunistic Pathogens (Cops): The Beasts In All Of Us., Lance B Price, Bruce A Hungate, Benjamin J Koch, Gregg S Davis, Cindy M Liu

Environmental and Occupational Health Faculty Publications

Colonizing opportunistic pathogens (COPs) are microbes that asymptomatically colonize the human body and, when the conditions are right, can cause infections. Their ability to persist indefinitely and to be transmitted without detection [1] gives COPs a unique epidemiology that warrants special consideration. There are examples of COPs among bacteria, fungi (e.g., Candida albicans [2]), protozoa (e.g., Blastocystis [3, 4]), and viruses (e.g., Rhinovirus [5]), but bacterial COPs are of particular relevance because of their major contribution to today’s antibiotic resistance crisis. The COPs include a long list of notorious bacteria that …

Bridging Post-Wildfire Communication Gaps Between Managers, Researchers, And Local Communities, Including A Biological Soil Crust Case Study, Hilary Louise Whitcomb

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Immediately after a wildfire land managers act quickly to protect water supplies, soil stability, habitat, and forage. We don't currently understand how managers make trade-off decisions between social, political, and ecological factors in these tight timelines or if they are able to use new science. We do know ecosystems often benefit from local engagement, and new, scientifically-grounded methods that improve restoration efforts are needed. As post-wildfire timelines don’t often allow for outside input, I asked managers what they and stakeholders think about post-wildfire projects and what managers think about new science. I asked local citizens what they think about postwildfire …

Repeated Evolution Of Vertebrate Pollination Syndromes In A Recently Diverged Andean Plant Clade, Laura P. Lagomarsino, Elisabeth J. Forrestel, Nathan Muchhala, Charles C. Davis

Faculty Publications

© 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution. Although specialized interactions, including those involving plants and their pollinators, are often invoked to explain high species diversity, they are rarely explored at macroevolutionary scales. We investigate the dynamic evolution of hummingbird and bat pollination syndromes in the centropogonid clade (Lobelioideae: Campanulaceae), an Andean-centered group of ∼550 angiosperm species. We demonstrate that flowers hypothesized to be adapted to different pollinators based on flower color fall into distinct regions of morphospace, and this is validated by morphology of species with known pollinators. This supports the existence of …