Digital Commons Network^™

Design And Evaluation Of Pediatric Gait Rehabilitation Robots, Cale J. Stolle

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

Gait therapy methodologies were studied and analyzed for their potential for pediatric patients. Using data from heel, metatarsal, and toe trajectories, a nominal gait trajectory was determined using Fourier transforms for each foot point. These average trajectories were used as a basis of evaluating each gait therapy mechanism. An existing gait therapy device (called ICARE) previously designed by researchers, including engineers at the University of Nebraska-Lincoln, was redesigned to accommodate pediatric patients. Unlike many existing designs, the pediatric ICARE did not over- or under-constrain the patient’s leg, allowing for repeated, comfortable, easily-adjusted gait motions. This design was assessed under clinical …

Characterization Of Molecular Communication Based On Cell Metabolism Through Mutual Information And Flux Balance Analysis, Zahmeeth Sayed Sakkaff

School of Computing: Dissertations, Theses, and Student Research

Synthetic biology is providing novel tools to engineer cells and access the basis of their molecular information processing, including their communication channels based on chemical reactions and molecule exchange. Molecular communication is a discipline in communication engineering that studies these types of communications and ways to exploit them for novel purposes, such as the development of ubiquitous and heterogeneous communication networks to interconnect biological cells with nano and biotechnology-enabled devices, i.e., the Internet of Bio-Nano Things. One major problem in realizing these goals stands in the development of reliable techniques to control the engineered cells and their behavior from the …

Optimization Of Irrigation Decision In Cornsoywater, Dharmic Payyala

School of Computing: Dissertations, Theses, and Student Research

A crop simulation model is used to estimate crop production as a function of weather conditions, soil parameters, and plant related inputs. These crop simulation models are extensively used by farmers, corporations and policy makers for agronomical planning and decision making. CornSoyWater is one such application which provides irrigation recommendation for soy and corn farmers using hybrid maize and soy sim models. As this is a simulation technology, the accuracy of results depends on the quality of data provided to it. One such important input parameter is weather data. CornSoyWater simulates field and crop conditions by retrieving the updated weather …

Semeo: A Semantic Equivalence Analysis Framework For Obfuscated Android Applications, Zhen Hu

School of Computing: Dissertations, Theses, and Student Research

Software repackaging is a common approach for creating malware. In this approach, malware authors inject malicious payloads into legitimate applications; then, to ren- der security analysis more difficult, they obfuscate most or all of the code. This forces analysts to spend a large amount of effort filtering out benign obfuscated methods in order to locate potentially malicious methods for further analysis. If an effective mechanism for filtering out benign obfuscated methods were available, the number of methods that must be analyzed could be reduced, allowing analysts to be more productive. In this thesis, we introduce SEMEO, a highly effective and …

Testing The Independence Hypothesis Of Accepted Mutations For Pairs Of Adjacent Amino Acids In Protein Sequences, Jyotsna Ramanan

School of Computing: Dissertations, Theses, and Student Research

Evolutionary studies usually assume that the genetic mutations are independent of each other. However, that does not imply that the observed mutations are independent of each other because it is possible that when a nucleotide is mutated, then it may be biologically beneficial if an adjacent nucleotide mutates too.

With a number of decoded genes currently available in various genome libraries and online databases, it is now possible to have a large-scale computer-based study to test whether the independence assumption holds for pairs of adjacent amino acids. Hence the independence question also arises for pairs of adjacent amino acids within …

Miocene-Pliocene Strike-Slip Basin Development Along The Denali Fault System In The Eastern Alaska Range: Chronostratigraphy And Provenance Of The Mccallum Formation And Implications For Displacement, Wai Kehadeezbah Allen

Open Access Theses

The Denali fault system represents one of the major strike-slip faults in North America but very little is known about the amount and timing of displacement on this 2000-km-long structure. The 7.9 M 2002 Denali Earthquake emphasized the importance of this fault system for understanding the deformational record of the upper plate of the southern Alaska convergent margin. Our analysis of the Miocene-Pliocene McCallum Formation located along the east-central part of the Denali fault provides one of the few records for Neogene displacement as well as changes in surface and basin processes related to tectonic transport. We have established a …

Using Academic And Learning Analytics To Explore Student Success In An Online Graduate Program In Communication, Megan N. Bergman

Open Access Theses

Fueled by the increase in data associated with the use of learning management systems, scholars and practitioners alike have been trying to explain and predict student success; yet the use of data analytic methods (academic and learning analytics) in higher education has created challenges and shortcomings for those who wish to adopt learning and academic analytics practices for their institution or program. Very little is known about either online education, particularly in the field of communication, as well as in online graduate and professional degree programs in any field from a learning and academic analytics perspective. This work reviews the …

Investigation Of Ambient Seismic Noise Using Seismic Interferometry In The Midwestern United States, Joshua Dakota Boschelli

Open Access Theses

The portion of the North American craton occupied by the Midwestern United States is a cratonic platform, where a veneer of Phanerozoic sedimentary strata buries the Precambrian basement up to 7 km. Due to the sediment cover and low topographic relief, the at depth structure of the region remains poorly understood. This region is of particular interest because over the past half-billion years tectonic forces have resulted in the formation of epeirogenic provinces in a stable cratonic interior. Using the OIINK flexible seismic array and the Earthscope Transportable Array, Ambient Seismic Noise Tomography was applied to investigate the crustal structure …

Lightcraft Previzion In Distance Education, Perry L. Cox

Open Access Theses

Visual Effects has continued to progress at an astonishing rate and green screen technology can be seen in all aspects of the video industry from Hollywood blockbusters down to training videos and distance education.

As video technology has increased, so has the quality and capability of distance education. Purdue University has set itself to be at the forefront of distance education. This study looked to evaluate Purdue's investment in the Lightcraft Technology's Previzion system and its impact on distance education at Purdue. There were 65 initial participants and this study compared the impact of two separate videos on their learning. …

Tangible Interaction As An Aid For Object Navigation In 3d Modeling, Sanmathi Dangeti

Open Access Theses

This study introduced an interaction technique that used tangible interaction for 3D modeling. A hybrid interaction technique using a Kinect camera and a smartphone with a gyroscope was developed for the navigating objects in a 3D modeling software. It was then tested on 20 participants categorized as amateurs who had basic 3D/ CAD modeling experience and 20 participants categorized as the experts who had extensive experience working with the modeling software. This research study presents the need for existence of such interaction technique, gaps from the related previous studies, statistical findings from the current study and possible reasons for the …

Taming Tail Latency For Erasure-Coded, Distributed Storage Systems, Jingxian Fan

Open Access Theses

Nowadays, in distributed storage systems, long tails of responsible time are of particular concern. Modern large companies like Bing, Facebook and Amazon Web Service show that 99.9th percentile response times being orders of magnitude worse than the mean. With the advantages of maintaining high data reliability and ensur- ing enough space eciency, erasure code has become a popular storage method in distributed storage systems. However, due to the lack of mathematical models for analyzing erasure-coded based distributed storage systems, taming tail latency is still an open problem.

In this research, we quantify tail latency in such systems by deriving a …

An Investigation Of Composite Failure Analyses And Damage Evolution In Finite Element Models, Ann M. Frappier

Open Access Theses

This paper presents a composite conical structure used commonly in flight-qualification testing. This structure’s overall load-displacement behavioral response is characterized. Mixed-mode multidelamination in a layered composite specimen is considered in Abaqus/Explicit through both the Virtual Crack Closure Technique and Cohesive Elements. The Virtual Crack Closure Technique and Cohesive Elements are compared against experimental test results presented in literature. Further, a thorough comparison in which the effects of failure criteria type, through-thickness mesh density, and finite element type on the progressive failure response of this composite assembly is discussed. Lastly, Abaqus/Standard and Helius PFA are compared in order to gain confidence …

Lower Food Web Dynamics In Lakes Michigan And Huron: Spatial And Temporal Responses To Recent Oligotrophication, Margaret Hutton Stadig

Open Access Theses

Nutrient abatement programs, originally enacted to counter eutrophication have successfully suppressed nutrient loads and relative primary production in marine and freshwater systems. Recently, the additive impacts of invasive filter feeders have further reduced offshore primary production in several aquatic systems throughout the world. It has been hypothesized that the biological activity of these invasive species may sequester nutrients within the nearshore benthic environment, creating steep gradients in primary production between nearshore and offshore habitats. In the Laurentian Great Lakes, past studies of oligotrophication have primarily focused on food web responses in offshore habitats. Organisms at higher trophic levels have been …

Improving A Mesh Segmentation Algorithm Based On Non-Negative Matrix Factorization, Jisun Kang

Open Access Theses

3D Mesh segmentation is used in various applications such as object recognition, reconstruction, and analyzing structure of meshes. The method for 3D mesh segmentation based on sparse non-negative matrix factorization (NMF) was previously proposed. It represents a novel, and conceptually simpler, method than other comparable algorithms. However, this method still has potential to improve performance, results could have better consistency and uniqueness with faster computation time than the prior proposed algorithm. This study introduced several approaches to enhance the performance of the algorithm comprehensively: applying dierent update rule and initialization of factor matrices, and imposing sparseness to the factor matrices …

Remote Sensing Of Snow Using Bistatic Radar Reflectometry, Abi Komanduru

Open Access Theses

Snow and ice processes are a critical part of the Earth’s hydrological and climate cycles. These processes can serve as an important source of fresh water as well as a cause of flooding. Various missions have been proposed by NASA and ESA for the purpose of remote sensing of snow. This research looks at applying bistatic radar reflectometry to the remote sensing of snow water equivalent. The resulting phase offset from changes in optical path length due to reflection through snow are the primary measurements made. The research uses data from a field campaign in Fraser, CO, involving an instrument …

Video Annotation By Crowd Workers With Privacy-Preserving Local Disclosure, Apeksha Dipak Kumavat

Open Access Theses

Advancements in computer vision are still not reliable enough for detecting video content including humans and their actions. Microtask crowdsourcing on task markets such as Amazon Mechnical Turk and Upwork can bring humans into the loop. However, engaging crowd workers to annotate non-public video footage risks revealing the identities of people in the video who may have a right to anonymity.

This thesis demonstrates how we can engage untrusted crowd workers to detect behaviors and objects, while robustly concealing the identities of all faces. We developed a web-based system that presents obfuscated videos to crowd workers, and provides them with …

Classification Of Road Users Detected And Tracked With Lidar At Intersections, Cristhian Guillermo Lizarazo Jimenez

Open Access Theses

Data collection is a necessary component of transportation engineering. Manual data collection methods have proven to be inefficient and limited in terms of the data required for comprehensive traffic and safety studies. Automatic methods are being introduced to characterize the transportation system more accurately and are providing more information to better understand the dynamics between road users. Video data collection is an inexpensive and widely used automated method, but the accuracy of video-based algorithms is known to be affected by obstacles and shadows and the third dimension is lost with video camera data collection.

The impressive progress in sensing technologies …

Mathematical Analysis Of Feedback Targets Of Bmp Signaling In Drosophila Embryonic Development, Yan Luo

Open Access Theses

Bone morphogenetic proteins (BMPs) drive a range of cellular processes especially in the early stages of embryonic development. This family of proteins acts as one of the most important extracellular signals in development pattern formation across the animal kingdom. Cells in embryos differentiate into different cell types in response to the concentration level of BMP. This complex process is regulated by multiple regulators that serve to tune the signal response.

Extensive experimental and computational research has been performed to analyze BMP regulation in Drosophila, a widely studied model organism, and has advanced our understanding of animal development. Because of …

A Small-Scale Testbed For Large-Scale Reliable Computing, Jason R. St. John

Open Access Theses

High performance computing (HPC) systems frequently suffer errors and failures from hardware components that negatively impact the performance of jobs run on these systems. We analyzed system logs from two HPC systems at Purdue University and created statistical models for memory and hard disk errors. We created a small-scale error injection testbed—using a customized QEMU build, libvirt, and Python—for HPC application programmers to test and debug their programs in a faulty environment so that programmers can write more robust and resilient programs before deploying them on an actual HPC system. The deliverables for this project are the fault injection program, …

Effect Of Temperature On Deep Lined Circular Tunnels In Isotropic And Transversely Anisotropic Elastic Ground, Fei Tao

Open Access Theses

A tunnel is a passageway constructed through soil or rock. It is one of the most important underground structures and has been widely used in transportation. Much research has been done on tunnel performance and on the interaction between ground, excavation, liner installation and support. The work has provided a better understanding of the interplay that exists between deformations and stresses transferred from the ground to the support. Significant insight into the problem has been provided by closed-form analytical solutions. A number of analytical formulations have been obtained for underground openings and lined tunnels under different scenarios, namely shallow or …

An Event Detection Approach Based On Twitter Hashtags, Shih-Feng Yang

Open Access Theses

Twitter is one of the most popular microblogging services in the world. The great amount of information made Twitter an important information channel for people to know and share news. Hashtag is a popular feature when people use Twitter. It can be taken as human labeled information and is useful for people to identify the topic of a tweet. Many researchers have proposed event-detection approaches that can monitor Twitter data and determine whether special events, such as accidents, extreme weather, earthquakes, or crimes, are happening. Although many approaches considered hashtag as one of their features, few of them explicitly focused …

Metrics Of Critical Pair Identification, Zixu Zhang

Open Access Theses

Critical Pair Identification works as a potential assistive tool for human air traffic controllers by identifying potentially dangerous situations that are not detected by proposed automated separation assurance systems. This concept specifically considers conflicts that might arise if aircraft unexpectedly deviate from their planned flight path in the near future. Five metrics of the critical pair concept, Critical Pair Count, Time to Risk Exposure, Lead Time, Risk Exposure Duration and Blunder Sensitivity Index, have been developed and mathematically defined to characterize the safety level of an aircraft pair or a volume of air space. Algorithm that computes proposed metrics is …

Analysis Of Composite Plates By Using Mechanics Of Structure Genome And Comparison With Ansys, Banghua Zhao

Open Access Theses

Motivated by a recently discovered concept, Structure Genome (SG) which is defined as the smallest mathematical building block of a structure, a new approach named Mechanics of Structure Genome (MSG) to model and analyze composite plates is introduced. MSG is implemented in a general-purpose code named SwiftComp™, which provides the constitutive models needed in structural analysis by homogenization and pointwise local fields by dehomogenization. To improve the user friendliness of SwiftComp™, a simple graphic user interface (GUI) based on ANSYS Mechanical APDL platform, called ANSYS-SwiftComp GUI is developed, which provides a convenient way to create some common SG models or …

Computational Environment For Modeling And Analysing Network Traffic Behaviour Using The Divide And Recombine Framework, Ashrith Barthur

Open Access Dissertations

There are two essential goals of this research. The first goal is to design and construct a computational environment that is used for studying large and complex datasets in the cybersecurity domain. The second goal is to analyse the Spamhaus blacklist query dataset which includes uncovering the properties of blacklisted hosts and understanding the nature of blacklisted hosts over time.

The analytical environment enables deep analysis of very large and complex datasets by exploiting the divide and recombine framework. The capability to analyse data in depth enables one to go beyond just summary statistics in research. This deep analysis is …

A Framework For The Statistical Analysis Of Mass Spectrometry Imaging Experiments, Kyle Bemis

Open Access Dissertations

Mass spectrometry (MS) imaging is a powerful investigation technique for a wide range of biological applications such as molecular histology of tissue, whole body sections, and bacterial films , and biomedical applications such as cancer diagnosis. MS imaging visualizes the spatial distribution of molecular ions in a sample by repeatedly collecting mass spectra across its surface, resulting in complex, high-dimensional imaging datasets. Two of the primary goals of statistical analysis of MS imaging experiments are classification (for supervised experiments), i.e. assigning pixels to pre-defined classes based on their spectral profiles, and segmentation (for unsupervised experiments), i.e. assigning pixels to newly …

Conceptual Understanding Of Threshold Concepts Of Electrical Phenomena: Mental Models Of Senior Undergraduates In Electrical Engineering, Mark T. Carnes

Open Access Dissertations

Every field of study has a set of domain-specific concepts that anyone who desires to work in that field must know and understand. Most students who pursue university degrees in engineering trust that their education is designed to provide them with this knowledge. But does it? In electrical engineering (EE), conceptual understanding of electrical phenomena has rarely been addressed. Even though the presumed goal of instructors and students alike is to learn the concepts of electrical phenomena well enough to be able to use the concepts to design useful things, it is difficult to determine whether this goal is being …

Authentic Science In Education: Studies In Course-Based Research At The United States Military Academy, Anthony M. Chase

Open Access Dissertations

This dissertation consists of two studies at the United States Military Academy. Both studies involve the use of Course-based Undergraduate Research Experiences (CUREs). These experiences give students the ability to engage in undergraduate research at an early point in their academic career by replacing traditional laboratory activities with semester-long research projects. Both studies show an implementation of this type of instruction from the Center for Authentic Science Practice in Education (CASPiE). Study 1 shows the specific method of implementation at the military academy and explores learning-based outcomes. Primarily the outcome of critical thinking is demonstrated. Critical thinking is a construct …

Visual Analytics Of Location-Based Social Networks For Decision Support, Junghoon Chae

Open Access Dissertations

Recent advances in technology have enabled people to add location information to social networks called Location-Based Social Networks (LBSNs) where people share their communication and whereabouts not only in their daily lives, but also during abnormal situations, such as crisis events. However, since the volume of the data exceeds the boundaries of human analytical capabilities, it is almost impossible to perform a straightforward qualitative analysis of the data. The emerging field of visual analytics has been introduced to tackle such challenges by integrating the approaches from statistical data analysis and human computer interaction into highly interactive visual environments. Based on …

Combinatorial Algorithms For Perturbation Theory And Application On Quantum Computing, Yudong Cao

Open Access Dissertations

Quantum computing is an emerging area between computer science and physics. Numerous problems in quantum computing involve quantum many-body interactions. This dissertation concerns the problem of simulating arbitrary quantum many-body interactions using realistic two-body interactions. To address this issue, a general class of techniques called perturbative reductions (or perturbative gadgets) is adopted from quantum complexity theory and in this dissertation these techniques are improved for experimental considerations. The idea of perturbative reduction is based on the mathematical machinery of perturbation theory in quantum physics. A central theme of this dissertation is then to analyze the combinatorial structure of the perturbation …

Hybrid Stm/Htm For Nested Transactions In Java, Keith G. Chapman

Open Access Dissertations

Transactional memory (TM) has long been advocated as a promising pathway to more automated concurrency control for scaling concurrent programs running on parallel hardware. Software TM (STM) has the benefit of being able to run general transactional programs, but at the significant cost of overheads imposed to log memory accesses, mediate access conflicts, and maintain other transaction metadata. Recently, hardware manufacturers have begun to offer commodity hardware TM (HTM) support in their processors wherein the transaction metadata is maintained “for free” in hardware. However, HTM approaches are only best-effort: they cannot successfully run all transactional programs, whether because of hardware …