Digital Commons Network^™

Satrat: Staphylococcus Aureus Transcript Regulatory Network Analysis Tool, Tamilselvi Gopal, Vijayaraj Nagarajan, Mohamed O. Elasri

Faculty Publications

Staphylococcus aureus is a commensal organism that primarily colonizes the nose of healthy individuals. S. aureus causes a spectrum of infections that range from skin and soft-tissue infections to fatal invasive diseases. S. aureus uses a large number of virulence factors that are regulated in a coordinated fashion. The complex regulatory mechanisms have been investigated in numerous high-throughput experiments. Access to this data is critical to studying this pathogen. Previously, we developed a compilation of microarray experimental data to enable researchers to search, browse, compare, and contrast transcript profiles. We have substantially updated this database and have built a novel …

A Royal Dna Mystery, Five Centuries Later: Unh Professors Weigh In On Richard Iii Findings, Unh Communications And Public Affairs

UNH Today Archive

No abstract provided.

Finding Our Way Through Phenotypes, Andrew R. Deans, Suzanna E. Lewis, Eva Huala, Salvatore S. Anzaldo, Michael Ashburner, James P. Balhoff, David C. Blackburn, Judith A. Blake, J. Gordon Burleigh, Bruno Chanet, Laurel D. Cooper, Mélanie Courtot, Sándor Csösz, Hong Cui, Wasila Dahdul, Sandip Das, T. Alexander Dececchi, Agnes Dettai, Rui Diogo, Robert E. Druzinsky, Michel Dumontier, Nico M. Franz, Frank Friedrich, George V. Gkoutos, Melissa Haendel, Luke J. Harmon, Terry F Hayamizu, Yongqun He, Heather M. Hines, Nizar Ibrahim, Laura M. Jackson, Pankaj Jaiswal, Christina James-Zorn, Sebastian Köhler, Guillaume Lecointre, Hilmar Lapp, Carolyn J. Lawrence, Nicolas Le Novère, John G. Lundberg, James Macklin, Austin R. Mast, Peter E. Midford, István Mikó, Christopher J. Mungall, Anika Oellrich, David Osumi-Sutherland, Helen Parkinson, Martín J. Ramírez, Stefan Richter, Peter N. Robinson, Alan Ruttenberg, Katja S. Schulz, Erik Segerdell, Katja C. Seltmann, Michael Sharkey, Aaron D. Smith, Barry Smith, Chelsea D. Specht, R. Burke Squires, Robert W. Thacker, Anne Thessen, Jose Fernandez-Triana, Mauno Vihinen, Peter D. Vize, Lars Vogt, Christine E. Wall, Ramona L. Walls, Monte Westerfeld, Robert A. Wharton, Christian S. Wirkner, James B. Woolley, Matthew J. Yoder, Aaron M. Zorn, Paula Mabee

Entomology Faculty Publications

Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across many key fields in biology, including genomics, systems biology, development, medicine, evolution, ecology, and systematics. Here we survey the current phenomics landscape, including data resources and handling, and the progress that has been made to accurately capture relevant data descriptions for phenotypes. We present an example of the kind of …

Executive Committee - Meeting Minutes, 1/6/2015, Academic Senate

Academic Senate Minutes

No abstract provided.

Separatome-Based Protein Expression And Purification Platform, Ellen M. Brune, Robert Beitle Jr., Mohammad M. Ataai, Patrick R. Bartlow, Ralph Henry

Patents Granted

Provided is a separatome-based recombinant peptide, polypeptide, and protein expression and purification platform based on the juxtaposition of the binding properties of host cell genomic peptides, polypeptides, and proteins with the characteristics and location of the corresponding genes on the host cell chromosome, such as that of E. coli, yeast, Bacillus subtilis or other prokaryotes, insect cells, mammalian cells, etc. This platform quantitatively describes and identifies priority deletions, modifications, or inhibitions of certain gene products to increase chromatographic separation efficiency, defined as an increase in column capacity, column selectivity, or both, with emphasis on the former. Moreover, the platform provides …

Dee Hayward Named Alphagraphics Armstrong Student-Athlete Of The Month For December, Armstrong State University

Armstrong Athletics: Men's Basketball News (Archived)

Dee Hayward Named AlphaGraphics Armstrong Student-Athlete of the Month For December.

Functional Layer-By-Layer Design Of Xerogel-Based 1st Generation Amperometric Glucose Biosensors, Nicholas G. Poulos, Jackson R. Hall, Michael C. Leopold

Chemistry Faculty Publications

Xerogel-based first-generation amperometric glucose biosensors, constructed through specific layer-by-layer assembly of films featuring glucose oxidase doped xerogel, a diffusion-limiting xerogel layer, and capped with both electropolymerized polyphenol and blended polyurethane semipermeable membranes, are presented. The specific combination of xerogels formed from specific silane precursors, including propyl-trimethoxysilane, isobutyl-trimethoxysilane, octyl-trimethoxysilane, and hydroxymethyl-triethoxysilane, exhibit impressive dynamic and linear ranges of detection (e.g., ≥24–28 mM glucose) and low response times, as well as significant discrimination against common interferent species such as acetaminophen, ascorbic acid, sodium nitrite, oxalic acid, and uric acid as determined by selectivity coefficients. Additionally, systematic electrochemical and contact angle studies of …

Preservation Of Information Resources In Selected School Libraries In Ibadan North Local Government Area Of Oyo State, Nigeria, Sunday A. Oluwaniyi

Library Philosophy and Practice (e-journal)

Abstract

This study investigated the preservation of information resources in selected school libraries in Ibadan North Local Government Area of Oyo State, Nigeria. The study examined the existence of preservation of information policies in school libraries, preservation measures in place, preservation equipment and materials available in school libraries, level of support given to preservation by the school management, level of training given to library staff on preservation in school libraries and barriers to effective preservation of information resources in school libraries.

The study adopted a descriptive survey research design and the instruments used were structured questionnaire administered to the school …

A Comprehensive Analysis Of The H-Ib And L-1 Visa Programs In The U.S. From An It Perspective, Donald R. Moscato, Eric D. Moscato

Communications of the IIMA

This paper analyzes the experience of the H-IB and L-1 visa programs and their impact on information technology in the United States. The topics discussed are as follows: initial justification of the programs, the relationship of the programs to outsourcing and off-shoring, who is covered by the H-IB and L-1 visa programs, utilization of the visa programs by various constituencies, the impact of the visa programs on the prevailing wage, the arguments pro and con for the program, who is on either side of the lobbying effort, protectionist legislation regarding the visa programs, fraud within the visa programs, the alleged …

Web-Based Aptitude Tests At Universities In German-Speaking Countries, Michael Amberg, Sonja Fischer, Manuela Schroder

Communications of the IIMA

Universities can select their students more and more independently. In order to support the selection process, web-based aptitude tests are a possibility to balance benefits und efforts of this task. Within this paper, we will point out how current web-based aptitude tests are designed, what competences are covered, and which methods for development are used. For this purpose, we developed a classification how web-based aptitude tests are implemented. Furthermore, competences as the basis of web-based aptitude tests are appraised. Four competence categories (professional, methodological, personal, and social competences) are selected as the most appropriate pattern. Thereafter, we analyse methods for …

Evolution And Ecology Of Two Iconic Australian Clades: The Meliphagidae (Birds) And The Hakeinae (Plants), Eliot Trimarchi Miller

Dissertations

The first part of this dissertation explores the evolution of two iconic groups of species through Australian climate space: the Meliphagidae, or honeyeaters, which are primarily nectar-feeding birds, and the Hakeinae, a section of the plant family Proteaceae. Both groups are inferred to have had their origins in Gondwanan rainforests that were widespread across Australia 45 million years ago and then diversified into more arid environments as the continent’s climate became more arid. Accordingly, dry environments are inhabited by closely related (phylogenetically clustered) sets of species, although, in contrast to the honeyeaters, Hakeinae communities are characterized by more localized diversification. …

Critical Zone Services: Expanding Context, Constraints, And Currency Beyond Ecosystem Services, Jason P. Field, David D. Breshears, Darin J. Law, Juan C. Villegas, Laura López-Hoffman, Paul D. Brooks, Jon Chorover, Greg A. Barron-Gafford, Rachel E. Gallery, Marcy E. Litvak, Rebecca A. Lybrand, Jennifer C. Mcintosh, Thomas Meixner, Guo-Yue Niu, Shirley A. Papuga, Jon D. Pelletier, Craig R. Rasmussen, Peter A. Troch

Environmental Science and Geology Faculty Research Publications

Processes within the critical zone—spanning groundwater to the top of the vegetation canopy—have important societal relevance and operate over broad spatial and temporal scales that often are not included in existing frameworks for ecosystem services evaluation. Here we expand the scope of ecosystem services by specifying how critical zone processes extend context both spatially and temporally, determine constraints that limit provision of services, and offer a potentially powerful currency for evaluation. Context: A critical zone perspective extends the context of ecosystem services by expressly addressing how the physical structure of the terrestrial Earth surface (e.g., parent material, topography, and orography) …

Ada News - 01/05/2015, American Dental Association, Publishing Division

ADA News

Established in 1970 as the official newspaper of the American Dental Association, the ADA News serves practicing dentists and others allied to the dental profession in the U.S. and internationally. It is the No. 1 source of news and information about the many benefits and services the ADA delivers to members daily as well as timely information on scientific, social, political and economic developments affecting dentistry and health care.

A Is For Animal: The Animal User’S Lexicon, Joel Marks

Between the Species

In Lewis Carroll’s Through the Looking Glass, Humpty Dumpty explains to Alice, “When I use a word … it means just what I choose it to mean — neither more nor less.” When Alice questions this license, Humpty Dumpty replies, “The question is … which is to be master — that’s all.” The present article offers a lexicon of words that are used by human beings, however unintentionally or ingenuously, to maintain their mastery or prerogatives over other animals. A motivating assumption of the article is that putting on display the verbal menagerie in animal agriculture, animal experimentation, and …

Urban Rural Comparisons Of Polycystic Ovary Syndrome Burden Among Adolescent Girls In A Hospital Setting In India, Swetha Balaji, Chioma Amadi, Satish Prasad, Jyoti Bala Kasav, Vandana Upadhyay, Awnish K. Singh, Krishna Mohan Surapaneni, Ashish Joshi

Publications and Research

Background. Polycystic ovarian syndrome (PCOS) is a multifaceted disorder characterized by varying clinical presentations. Objective. The aim of this study was to determine urban and rural differences in the burden of polycystic ovarian syndrome among Indian adolescent females aged 12 to 19 years. Methods. A pilot cross-sectional study was conducted for a period of one month (August-September 2013) at Balaji Hospital, Vellore, Tamil Nadu, India. The final sample included 126 study participants located in various urban (50%, n = 63) and rural (50%, n = 63) settings. Information was gathered on sociodemographic and anthropometric characteristics, clinical history, occurrence of acne …

Drift Algae In New Haven Harbor And Impacts On Benthic Communities, Roman Zajac, Andrea Mccarthy

Biology and Environmental Science Faculty Publications

In 2009 the University of New Haven initiated studies to develop a contemporary database and assessment of the benthic ecology of New Haven Harbor. Previous studies were last conducted in the 1970s and 1980s (e.g. McCusker, and Bosworth 1979, 1981, Rhoads and Germano 1982). Benthic populations and communities are excellent indicators of environmental conditions and are regularly used for environmental assessment in estuarine and coastal waters (e.g. Pearson and Rosenberg 1978, Rhoads et al. 1978, Zajac and Whitlatch 2001, Mangi 2003). Given the inherent ability of the benthos to integrate sediment and water quality, many environmental indicators and indices to …

Library News

The Southeastern Librarian

Recent developments from SELA member institutions.

News Of The Department Of Animal Science, Department Of Animal Science

Animal Science Newsletters

No abstract provided.

Crow's Nest, January 5, 2015, Crow's Nest Staff

Crow's Nest

The January 5, 2015, issue of the Crow's Nest.

Biological Reasons For The Neurotoxic Effects Of Mdma (‘Ecstasy’) On The Developing Fetus, Leah Schneeweiss

The Science Journal of the Lander College of Arts and Sciences

MDMA (3, 4-methylenedioxymethamphetamine) is an illicit, recreational drug known by many individuals as ‘Ecstasy.’ MDMA has gained popularity over the past decade and has become a drug of choice at dance parties and clubs because of the stimulating and hallucinogenic effects that it has on the central nervous system. Scientists have determined that MDMA causes neurotoxic damage to adults by harming the serotonergic system in the adult brain. Researchers discovered that embryos exposed to MDMA while in utero also suffer neurotoxic deficits, although not due to impairments in the embryos’ serotonergic systems. These deficits arise because of the cortisol increase …

To Pair Or Not To Pair: Sources Of Social Variability With White-Faced Saki Monkeys (Pithecia Pithecia) As A Case Study, Cynthia Thompson

Open Access Publishing Support Funded Articles

Intraspecific variability in social systems is gaining increased recognition in primatology. Many primate species display variability in pair-living social organizations through incorporating extra adults into the group. While numerous models exist to explain primate pair-living, our tools to assess how and why variation in this trait occurs are currently limited. Here I outline an approach which: (i) utilizes conceptual models to identify the selective forces driving pair-living; (ii) outlines novel possible causes for variability in social organization; and (iii) conducts a holistic species-level analysis of social behavior to determine the factors contributing to variation in pair-living. A case study on …

The Effects Of Parasites, Metals, And Environmental Conditions On Spotted Salamander (Ambystoma Maculatum) Populations Breeding In Northern Arkansas, Heather M. Demali

Student Theses and Dissertations

As more and more stressors impact amphibians worldwide, studies investigating multiple stressors currently affecting amphibians have increased. Novel to herpetological research is investigating parasites and metals of concern in spotted salamanders (Ambystoma maculatum) in northern Arkansas during the spotted salamander's breeding season. This study was conducted in Greene County and Stone County, Arkansas, during the spotted salamander's 2014 breeding season. Sublethal and lethal effects on Ceriodaphnia dubia were not observed; however, decrease in Pimephales promelas growth and survival suggest that other environmental stressors are affecting the vertebrate test organism in water from these ponds. Metal analysis showed that with increased …

Single-Unit Turbines And Bat Mortality In Arkansas, Phillip Nathaniel Jordan

Student Theses and Dissertations

Wind power has become a substantial investment in the United States energy portfolio. It is approximated that by the year 2030, 30% of the world's energy will be produced by wind. An estimated 600,000 to 800,000 bats are killed in the United States every year by wind turbines. Using Anabat SD2, mist netting, fatalities searches, and two automatic-acoustic identifiers, I investigated six single-single unit turbines and their effects on bats in two ecoregions of Arkansas during the summers of 2012 and 2013. Netting effort totaled 30 nights with 94 bats captured during that time. I performed a combined 142 fatality …

Undergraduate Training In Public Health Should Prepare Graduates For The Workforce, Randy Wykoff, Amal Khoury, J. Michael Stoots, Robert P. Pack

ETSU Faculty Works

There has been a rapid growth in the number of programs awarding undergraduate degrees in public health and the number of students receiving such degrees (1). There has not, however, been a significant discussion of the purpose of such degree programs. What, if anything, are the recipients of these degrees being trained to do? What careers, if any, are they being prepared to enter? Is the degree designed primarily to prepare students to enter graduate training in public health or some other graduate or health professional programs? Alternatively, does the degree exist because “an understanding of public health is a …

Distribution And Mixing Of Old And New Nonstructural Carbon In Two Temperate Trees, Andrew D. Richardson, Mariah S. Carbone, Brett A. Huggett, Morgan E. Furze, Claudia I. Czimczik, Jennifer C. Walker, Xiaomei Xu, Paul G. Schaberg, Paula Murakami

All Faculty Scholarship

Summary: We know surprisingly little about whole-tree nonstructural carbon (NSC; primarily sugars and starch) budgets. Even less well understood is the mixing between recent photosynthetic assimilates (new NSC) and previously stored reserves. And, NSC turnover times are poorly constrained. We characterized the distribution of NSC in the stemwood, branches, and roots of two temperate trees, and we used the continuous label offered by the radiocarbon (carbon-14, ¹⁴C) bomb spike to estimate the mean age of NSC in different tissues. NSC in branches and the outermost stemwood growth rings had the ¹⁴C signature of the current growing season. However, …

Report For Nmdgf Permit: 3599, 2014, David J. Buys

Natural Heritage New Mexico Documents

Document from New Mexico Department of Game & Fish Scientific permit.

Report For Nmdgf Permit: 3559, 2014, David J. Buys

Natural Heritage New Mexico Documents

Document from New Mexico Department of Game & Fish Scientific permit.

Management Of Cerebral Cavernous Malformations: From Diagnosis To Treatment, Nikolaos Mouchtouris, Nohra Chalouhi, Md, Ameet Chitale, Robert Starke, Stavropoula Tjoumakaris, Robert H. Rosenwasswer Md, P. M. Jabbour

Department of Neurosurgery Faculty Papers

No abstract provided.

A Taxonomy Of Mis, David Majd

Research Reports from the Department of Operations

A perusal of the management information systems (MIS) literature or attendance at a major conference calls attention to the diversity of the discipline and the need to have some larger frame of reference in which to understand MIS research. This paper utilizes two MIS research frameworks to demonstrate the role of integrative thought in understanding and guiding MIS research. A literature review is used to support the claim that the benefits of improved recall, more effective hypothesis generation, wiser allocation of research resources and better interdisciplinary communication can result from the use of these frameworks. [Published circa 1988-1990.]

January 5, 2015: Jan Term Speakers, Writing Life Stories, Carla Bossard Video, Saint Mary's College Of California

SMC Bulletin 2013-2020

No abstract provided.