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Quantitative Detection Of Syntrophic Fatty Acid-Degrading Bacterial Communities In Methanogenic Environments, Prince Peter Mathai, Daniel Zitomer, James Maki

Biological Sciences Faculty Research and Publications

In methanogenic habitats, volatile fatty acids (VFA), such as propionate and butyrate, are major intermediates in organic matter degradation. VFA are further metabolized to H2, acetate and CO2 by syntrophic fatty acid-degrading bacteria (SFAB) in association with methanogenic archaea. Despite their indispensable role in VFA degradation, little is known about SFAB abundance and their environmental distribution. To facilitate ecological studies, we developed four novel genus-specific quantitative PCR (qPCR) assays, with primer sets targeting known SFAB: Syntrophobacter, Smithella, Pelotomaculum and Syntrophomonas. Primer set specificity was confirmed using in silico and experimental (target controls, clone libraries and melt-curve analysis) …

Mate Replacement And Alloparental Care In Ferruginous Hawk, Shubham Datta, Will M. Inselman, Jonathan A. Jenks, Kent Jensen, Christopher C. Swanson, Robert W. Klaver, Indrani Sasmal, Troy W. Grovenburg

Natural Resource Management Faculty Publications

Alloparental care (i.e., care for unrelated offspring) has been documented in various avian species (Maxson 1978, Smith et al. 1996, Tella et al. 1997, Lislevand et al. 2001, Literak and Mraz 2011). A male replacement mate that encounters existing broods has options, which include alloparental care or infanticide. Infanticide may be beneficial in some species (Rohwer 1986, Kermott et al. 1990), but in long-lived avian species, like the ferruginous hawk (Buteo regalis) that do not renest within a season, infanticide might be detrimental. Adoption and rearing success likely provide direct evidence of competence of replacement mates as potential parents for …

Socio-Economic Instability And The Scaling Of Energy Use With Population Size, John P. Delong, Oskar Burger

School of Biological Sciences: Faculty Publications

The size of the human population is relevant to the development of a sustainable world, yet the forces setting growth or declines in the human population are poorly understood. Generally, population growth rates depend on whether new individuals compete for the same energy (leading to Malthusian or density-dependent growth) or help to generate new energy (leading to exponential and super-exponential growth). It has been hypothesized that exponential and super-exponential growth in humans has resulted from carrying capacity, which is in part determined by energy availability, keeping pace with or exceeding the rate of population growth. We evaluated the relationship between …

Climatic Variation And Seed Persistence: Freeze-Thaw Cycles Lower Survival Via The Joint Action Of Abiotic Stress And Fungal Pathogens, Brian M. Connolly, John L. Orrock

Biology Faculty Scholarship

Global climate change is altering thermal cycles in soils during late winter, a transition that may directly threaten seed survival via abiotic stress, facilitate infection by soil-borne pathogens, or both. Using field-collected soil and seeds of the perennial bunchgrass Elymus canadensis, we tested the hypothesis that soil freeze–thaw events limit survival within the soil through direct effects on seed persistence and amplification of soil pathogen attack using a factorial experiment that manipulated freeze–thaw cycles (constant freeze vs. freeze–thaw) and fungicide addition. Freeze–thaw treatment resulted in lower seedling emergence and delayed emergence time relative to constant-freeze controls. Fungicide-treated soils had …

Vitamin D As An Adjunctive Therapy In Asthma. Part 2: A Review Of Human Studies, Conor Kerley, Basil Elnazir, John Faul, Liam Cormican

Articles

Vitamin D deficiency (VDD) is highly prevalent worldwide, with adverse effects on bone health but also potentially other unfavorable consequences. VDD and asthma-incidence/severity share many common risk factors, including winter season, industrialization, poor diet, obesity, dark skin pigmentation, and high latitude. Multiple anatomical areas relevant to asthma contain both the enzyme responsible for producing activated vitamin D and the vitamin D receptor suggesting that activated vitamin D (1,25- dihydroxyvitamin D) may have important local effects at these sites. Emerging evidence suggests that VDD is associated with increased airway hyperresponsiveness, decreased pulmonary function, worse asthma control, and possibly decreased response to …

Swift Fox Abundance Along The Heartland Expressway Corridor In Nebraska, Marc Albrecht

Nebraska Department of Transportation: Research Reports

No abstract provided.

Phylogeography Of Southeast Asian Flying Foxes (Chiroptera: Pteropodidae: Pteropus), Susan Man Shu Tsang

Dissertations, Theses, and Capstone Projects

Flying foxes (Pteropus) are a genus of Old World fruit bats that are important seed dispersers and pollinators for plants native to the 200,000+ islands in Southeast Asia, yet they are some of the most poorly known bats in the world. They comprise some of the largest known bat species, and are morphologically relatively conserved on the genus level. Pteropus is the most species-rich genus within Pteropodidae, though the origin for this diversity remains incompletely understood. In Chapter 1, I discuss the importance of Pteropus to the ecosystem and as reservoir hosts. In Chapter 2, a molecular phylogeny is presented …

Macroalgal Responses To Ocean Acidification Depend On Nutrient And Light Levels, Psm Celis-Plã¡, Jason M. Hall-Spencer, Paulo Antunes Horta, Marco Milazzo, Nathalie Korbee, Christopher E. Cornwall, Félix L. Figueroa

School of Biological and Marine Sciences

No abstract provided.

Different Populations Of Blacklegged Tick Nymphs Exhibit Differences In Questing Behavior That Have Implications For Human Lyme Disease Risk, Isis M. Arsnoe, Graham J. Hickling, Howard S. Ginsberg, Richard Mcelreath, Jean I. Tsao

Plant Sciences and Entomology Faculty Publications

Animal behavior can have profound effects on pathogen transmission and disease incidence. We studied the questing (= host-seeking) behavior of blacklegged tick (Ixodes scapularis) nymphs, which are the primary vectors of Lyme disease in the eastern United States. Lyme disease is common in northern but not in southern regions, and prior ecological studies have found that standard methods used to collect host-seeking nymphs in northern regions are unsuccessful in the south. This led us to hypothesize that there are behavior differences between northern and southern nymphs that alter how readily they are collected, and how likely they are …

Trophic Pathways Supporting Arctic Grayling In A Small Stream On The Arctic Coastal Plain, Alaska, Jason John Mcfarland

Biological Sciences

Arctic Grayling (Thymallus arcticus) are widely distributed on the Arctic Coastal Plain (ACP) of Alaska, and are one of the few upper level consumers in streams, but the trophic pathways and food resources supporting these fish are unknown. Grayling migrate each summer into small beaded streams, which are common across the landscape on the ACP, and appear to be crucial foraging grounds for these and other fishes. I investigated prey resources supporting different size classes of grayling in a beaded stream, Crea Creek, where petroleum development is being planned. The specific objectives were to measure terrestrial prey subsidies entering the …

Dispersal Patterns And Summer Oceanic Distribution Of Adult Dolly Varden From The Wulik River, Alaska, Evaluated Using Satellite Telemetry, Michael B. Courtney

Fisheries

In Arctic Alaska, Dolly Varden Salvelinus malma is highly valued as a subsistence fish; however, little is known about oceanic dispersal or ecology. This study addresses this knowledge gap, by using a fisheries independent method, pop-up satellite archival tags (PSATs). In spring of 2012 and 2013, we attached 52 PSATs to Dolly Varden in a river in northwestern Alaska, which flows into the Arctic Ocean, to examine the marine dispersal, behavior and habitat occupancy of this species. Tagged Dolly Varden demonstrated two types of dispersal, including offshore and nearshore dispersal. The offshore type was the first documented northwesterly dispersal and …

Comparisons Of Arctic Cod, Arctic Staghorn Sculpin, And Shorthorn Sculpin Diets Throughout The Northeastern Chukchi And Western Beaufort Seas, Benjamin P. Gray

Fisheries

Diet information for Arctic Cod (Boreogadus saida), Arctic Staghorn Sculpin (Gymnocanthus tricuspis), and Shorthorn Sculpin (Myoxocephalus scorpius) in the northeastern Chukchi and western Beaufort seas is mostly descriptive. In this study, I examined diet variability due to region, depth, and body size by quantitatively comparing these fishes' diet compositions. To accomplish this, I analyzed the stomach contents of 1,620 fishes collected over three summers in the northeastern Chukchi Sea (2010-2012) and one summer in the western Beaufort Sea (2011). In general, body size and region accounted for most differences in diets. As body size increased, each species consumed a more …

Climate-Driven Change In Himalayan Rhododendron Phenology, Robert Evan Hart

Dissertations

Phenology – the seasonal timing of life-history events – is a critical dimension of natural history. It is also one of the earliest and most noticeable traits by which organisms respond to climate change. However, these responses are complex, and only beginning to be understood, especially in the montane and alpine environments that are among the ecosystems most vulnerable to climate change. Drawing from diverse data sets and employing multiple methodologies, I examined how climate affects phenology in Himalayan Rhododendron spp. Comprehensively monitoring flowering phenology over gradients of season and elevation on Mt. Yulong, China – home to a diverse …

Ion Interactions At The Mineral-Water Interface During Biogeochemical Iron And Manganese Cycling, Margaret A. G. Hinkle

Arts & Sciences Graduate Student Theses and Dissertations

The biogeochemical cycling of iron and manganese involves the reductive dissolution and oxidative precipitation of Fe(III) and Mn(IV/III) oxides. Biogenic Fe(III) and Mn(IV/III) oxides are often characterized by high surface areas and therefore high sorptive capacities. As a result, these minerals can substantially alter the chemistry of natural waters and the availability of micronutrients in soils and sediments by scavenging trace metals. Recent research indicates that the adsorption of aqueous Fe(II) onto Fe(III) oxides involves oxidative adsorption, electron transfer, and subsequent reductive dissolution at another surface site [a process collectively referred to as `electron transfer-atom exchange' (ET-AE)]. Aqueous Mn(II) adsorption …

Spatial Genetic Structure Of Hatchlings Of Cyclura Ricordii (Reptilia: Iguanidae) In Pedernales Province, Dominican Republic Is Inconsistent With Natal Philopatry, Rosanna Carrerase De Leon

Theses and Dissertations

Cyclura ricordii is an endemic iguana from Hispaniola and is listed as Critically Endangered on the IUCN. The main threats are predation by introduced mammals, habitat destruction and hunting. The present study focused on two nesting areas in Pedernales in the Dominican Republic. The hypothesis tested is that natal philopatry influences dispersal and nest site selection. Monitoring and sampling took place during 2012-2013. Polymorphic markers were used to evaluate whether natal philopatry limits dispersal at multiple spatial scales. Ripley’s K, revealed that nests were significantly clustered. Hierarchical AMOVA revealed that nest site aggregations did not explain a significant portion of …

The "Isolated Find" Concept And Its Consequences In Public Archaeology, Jesse Morton

Theses and Dissertations

The term “isolated find” has frequently been taken as a disposable artifact category in cultural resource management (CRM). Efforts were made to empirically demonstrate the fallacy of this concept and its use, using modified field sampling strategies, the inclusion of fine screen artifact analysis, and statistical analyses. Six sites containing prehistoric occupations on Camp McCain National Guard base in Grenada County, Mississippi were reinvestigated using these methods; their datasets were expanded in terms of site size, density, function, and temporal association, which may change their eligibility status for the National Register of Historic Places (NRHP). Fieldwork and classification based solutions …

Socioecological Processes In The Science Of Planetary Change, Cynthia Twyford Fowler, Cynthia Fowler

Faculty Scholarship

This presentation seeks to further understandings of human encounters with socioecological change and also of socioecological processes in the science of planetary change. In this presentation, I interpret the space-time involvements of two social groups. Using one filter, I do basic science by examining the ways Sumbanese construct the monsoonal landscapes which they communicate about, within which they move, and where they interact with other constituents of their environments. Using an alternate filter, I engage critical theory by deconstructing the ways scientists’ visualize changing landscapes with the aid of geospatial technologies. Whose purposes do geospatial scientists serve in documenting the …

Evolution Of Polyspora ( = Gordonia; Theaceae) In Sri Lanka, Liyana Arachchilage Anuradha Himashi Gunathilake

Open Access Dissertations

This dissertation examined the evolutionary relationships and evolutionary history of four endemic species of the genus Polyspora (= Gordonia) in Sri Lanka. Sri Lanka is part of the Western Ghats-Sri Lanka biodiversity hot spot with extraordinarily high species richness and endemism. In spite of its diversity and uniqueness, the biogeography of this region, especially of the flora, remains grossly understudied. My research aimed to fill this void by using the four endemic species of the genus Polyspora in Sri Lanka in phylogenetic, biogeographic, and morphological analyses. All four species of Polyspora in Sri Lanka are restricted to the wetzone of …

Biological Sciences Newsletter - May 2015, Department Of Biological Sciences, East Tennessee State University

Biological Sciences Newsletters

No abstract provided.

Assessing Knowledge And Attitudes Of The Human Papillomavirus Infection And Vaccine Among Adolescents In Hartford, Ct, Anita C. Chandrasekaran

Master's Theses

No abstract provided.

Global Research On Ultramafic (Serpentine) Ecosystems (8th International Conference On Serpentine Ecology In Sabah, Malaysia): A Summary And Synthesis, Antony Van Der Ent, Nishanta Rajakaruna, Robert Boyd, Guillaume Echevarria, Rimi Repin, Dick Williams

Biological Sciences

Since 1991, researchers from approximately 45 nations have participated in eight International Conferences on Serpentine Ecology (ICSE). The Conferences are coordinated by the International Serpentine Ecology Society (ISES), a formal research society whose members study geological, pedological, biological and applied aspects of ultramafic (serpentine) ecosystems worldwide. These conferences have provided an international forum to discuss and synthesise multidisciplinary research, and have provided opportunities for scientists in distinct fields and from different regions of the world to conduct collaborative and interdisciplinary research. The 8th ICSE was hosted by Sabah Parks in Malaysia, on the island of Borneo, and attracted the largest …

Microhabitat Use Affects Brain Size And Structure In Intertidal Gobies, Gemma E. White, Culum Brown

Veterinary Science and Medicine Collection

The ecological cognition hypothesis poses that the brains and behaviours of individuals are largely shaped by the environments in which they live and the associated challenges they must overcome during their lives. Here we examine the effect of environmental complexity on relative brain size in 4 species of intertidal gobies from differing habitats. Two species were rock pool specialists that lived on spatially complex rocky shores, while the remainder lived on dynamic, but structurally simple, sandy shores. We found that rock pool-dwelling species had relatively larger brains and telencephalons in particular, while sand-dwelling species had a larger optic tectum and …

Identifying Environmental Controls On The Shoreline Of A Natural River Delta, N. Geleynse, M. Hiatt, H. Sangireddy, P. Passalacqua

Faculty Publications

No abstract provided.

Understanding The Impacts Of Changes In Water Inflow On The Fishes Of Lake Turkana, Kenya, Natasha Jeanne Gownaris

Stony Brook Theses and Dissertations Collection, 2006-2020 (closed to submissions)

Lake Turkana, Kenya is an understudied desert lake that receives over 90% of its inflow from the Omo River in Ethiopia. The volume and patterns of inflow from this river influence the lake’s chemistry and productivity, as well as the availability of habitat and the breeding migrations of its fishes. Lake Turkana is at the precipice of large-scale changes in ecological function due to climate change and economic development along the Omo River, including the construction of massive dams and irrigation projects. Upstream development will reduce the volume of water entering the lake and dampen the lake’s ecologically crucial seasonal …

The Evolution And Ecology Of Individual Specializations Amongst A Group Of Dietary Generalists., Carl S. Cloyed

Electronic Theses and Dissertations

This dissertation examines individual diet specializations (IS) in a group of ecologically similar and evolutionarily related frogs and toads. Individual specialization is known to have widespread ecological and evolutionary effects. In an initial literature review (Chapter 2) I build a comprehensive theoretical framework showing how different types of population diversity can help, halt, or hinder sympatric speciation. I argue that IS can be maintained indefinitely in populations yet fail to lead to speciation because it is influenced by ecological conditions that may change. Additionally, IS can potentially aid niche partitioning among similar species, increasing species coexistence and resulting in less …

A Biometric Analysis Of Mate Choice Copying In People, Jonathan Lenhardt

Theses, Dissertations and Culminating Projects

Mate choice copying is the notion that a person or animal, after observing another choosing a romantic or sexual partner, will perceive that partner as more attractive and possibly attempt to acquire that same partner for themselves. Using measurement of pupil size in response to the presentation of pictures of men and women both alone and with a neutral or admiring partner, it was hypothesized that such a biometric measure could substantiate previous research that has supported the evidence of mate choice copying in people. This study's methodology complements that of previous studies utilizing questionnaires to measure the attractiveness of …

Mitigation Of Medusahead (Taeniatherum Caput-Medusae) Through Grazing And Revegetation On The Channeled Scablands Of Eastern Washington, Clinton A. Stonecipher

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

A large portion of the historical steppe and shrub-steppe habitats in eastern Washington have been altered through biotic and abiotic processes resulting in the annual grass medusahead becoming a large component of the altered vegetation. Experiments were conducted to determine: 1) if supplementing cattle with protein would help increase utilization of medusahead, 2) the grass species that could establish in the region, and 3) if mechanical disturbance would aid in such revegetation efforts. Cattle grazing medusahead-infested rangeland increased consumption of medusahead after all forage matured due to a reduction in the quality of forage alternatives. Cattle supplemented with protein increased …

Hydrologic Mediation Of The Spatial And Temporal Variability Of The Soil Carbon Dioxide Stable Isotopic Composition Of A Subalpine Watershed, Theresa Marie Lorenzo

School of Natural Resources: Dissertations, Theses, and Student Research

The stable carbon isotopic composition of CO₂ (δ¹³C-CO₂) has been studied as an indicator of changes in ecosystem CO₂ exchange. Soil moisture is an important factor in ecosystem CO₂ exchange through its influence on physiological and soil physical processes. However, the majority of previous research analyzing the influence of soil moisture on soil and soil-respired δ¹³C-CO₂ has been conducted with limited consideration of topographical variation, which controls the distribution of soil moisture across a landscape. This study characterized the stable isotopic composition (δ¹³C) and concentrations of soil CO …

Acute Toxicity Of Β-N-Methylamino-L-Alanine (Bmaa) To Fathead Minnow (Pimephales Promelas) And Zebrafish (Danio Rerio), Jiayi Wang

School of Natural Resources: Dissertations, Theses, and Student Research

β-N-methylamino-L-alanine (BMAA) is a neurotoxic amino acid produced by most species of cyanobacteria. Exposure to BMAA has been hypothesized as a cause of ALS and possibly Parkinson’s and Alzheimer’s diseases for several decades. Both in vitro and in vivo experiments revealed that exposure to elevated concentrations of BMAA can damage motor neurons and cause motor dysfunctions. However, the exact mechanism of BMAA-induced neurotoxicity has not been well understood.

Based on the available literature and in spite of its water-soluble and non-protein nature, BMAA appears to be able to bioaccumulate in organisms. The ubiquity of cyanobacteria and the potential for bioaccumulation …

The Relationship Between Manuscript Title Structure And Success: Editorial Decisions And Citation Performance For An Ecological Journal, Charles W. Fox, C. Sean Burns

Entomology Faculty Publications

A poorly chosen article title may make a paper difficult to discover or discourage readership when discovered, reducing an article's impact. Yet, it is unclear how the structure of a manuscript's title influences readership and impact. We used manuscript tracking data for all manuscripts submitted to the journal Functional Ecology from 2004 to 2013 and citation data for papers published in this journal from 1987 to 2011 to examine how title features changed and whether a manuscript's title structure was predictive of success during the manuscript review process and/or impact (citation) after publication. Titles of manuscripts submitted to Functional Ecology …