Digital Commons Network^™

Derivation Of Tropospheric Methane From Tccon Ch4 And Hf Total Column Observations, K. M. Saad, D. Wunch, P. Bernath, C. Boone, B. Connor, N. M. Deutscher, D.W.T. Griffith, R. Kivi, J. Notholt, C. Roehl, M. Schneider, V. Sherlock, P. O. Wennberg

Chemistry & Biochemistry Faculty Publications

The Total Carbon Column Observing Network (TCCON) is a global ground-based network of Fourier transform spectrometers that produce precise measurements of column-averaged dry-air mole fractions of atmospheric methane (CH₄). Temporal variability in the total column of CH₄ due to stratospheric dynamics obscures fluctuations and trends driven by tropospheric transport and local surface fluxes that are critical for understanding CH₄ sources and sinks. We reduce the contribution of stratospheric variability from the total column average by subtracting an estimate of the stratospheric CH₄ derived from simultaneous measurements of hydrogen fluoride (HF). HF provides a proxy for …

Anomia Treatment Platform As Behavioral Engine For Use In Research On Physiological Adjuvants To Neurorehabilitation, Diane Kendall, Anastasia Raymer, Miranda Rose, Joellen Gilbert, Leslie J. Gonzalez Rothi

Communication Disorders & Special Education Faculty Publications

The purpose of this study was to create a "behavioral treatment engine" for future use in research on physiological adjuvants in aphasia rehabilitation. We chose the behavioral target anomia, which is a feature displayed by many persons who have aphasia. Further, we wished to saturate the treatment approach with many strategies and cues that have been empirically reported to have a positive influence on aphasia outcome, with the goal being to optimize the potential for positive response in most participants. A single-subject multiple baseline design with replication across eight participants was employed. Four men and four women, with an average …

Multiplexing With Three-Primer Pcr For Rapid And Economical Microsatellite Validation, Salla Vartia, Patrick C. Collins, Thomas F. Cross, Richard D. Fitzgerald, David T. Gauthier, Philip Mcginnity, Luca Mirimin, Jens Carlsson

Biological Sciences Faculty Publications

The next generation sequencing revolution has enabled rapid discovery of genetic markers, however, development of fully functioning new markers still requires a long and costly process of marker validation. This study reports a rapid and economical approach for the validation and deployment of polymorphic microsatellite markers obtained from a 454 pyrosequencing library of Atlantic cod, Gadus morhua, Linnaeus 1758. Primers were designed from raw reads to amplify specific amplicon size ranges, allowing effective PCR multiplexing. Multiplexing was combined with a three-primer PCR approach using four universal tails to label amplicons with separate fluorochromes. A total of 192 primer pairs …

Global Priorities For Marine Biodiversity Conservation, Elizabeth R. Selig, Will R. Turner, Sebastian Troëng, Bryan P. Wallace, Kristin Kaschner, Ben G. Lascelles, Kent E. Carpenter, Russell A. Mittermeier

Biological Sciences Faculty Publications

In recent decades, many marine populations have experienced major declines in abundance, but we still know little about where management interventions may help protect the highest levels of marine biodiversity. We used modeled spatial distribution data for nearly 12,500 species to quantify global patterns of species richness and two measures of endemism. By combining these data with spatial information on cumulative human impacts, we identified priority areas where marine biodiversity is most and least impacted by human activities, both within Exclusive Economic Zones (EEZs) and Areas Beyond National Jurisdiction (ABNJ). Our analyses highlighted places that are both accepted priorities for …

The Motivation And Identity Challenges For Phd Holders In The Transition To Science And Mathematics Teaching In Secondary Education: A Pilot Study, Robert Whannell, William J. Allen

Research outputs 2014 to 2021

Australian secondary education has endured a chronic shortage of qualified mathematics and science teachers for a number of years, particularly in rural and remote areas. A longitudinal research project examining the capacity for the holders of PhD level qualifications in mathematics and science to be utilised as one means of addressing this shortage has been commenced at two regional Australian universities. This paper reports on the pilot study which utilised semi-structured interviews involving five participants at various stages of the transition into secondary school teaching. The interviews examined the motivations of the participants to enter secondary teaching and the challenges …

For The Love Of Dance, Rebecca J. Quinn

Digressions: Literary & Art Journal

No abstract provided.

A Peaceful Dawn, Ursalina Aguiler

Digressions: Literary & Art Journal

No abstract provided.

No Mas Excusas: Parent Latino Initiative, Kimberly L. Mcglaughlin

CGU Theses & Dissertations

Immigrant Latino parents are invested in their children and have an authentic interest in assisting their children to acquire an education and to succeed in school, but many parents face socioeconomic, language, and cultural barriers. This qualitative study looked at a group of immigrant Latino parents whose children attend a high school that is composed of predominantly Caucasian students from well-educated, middle-to-upper-class backgrounds. The parents are involved in a program developed by the researcher and her colleague.

The purpose of this study was to investigate the cultural beliefs and values of the program participants, the educational beliefs and values of …

Prevalence Of The Amphibian Chytrid Fungus Among Zoo And Pet Store Collections In The Northeastern United States, Harrison D. Winters, Katherine M. Albertini, Laura E. Neely, Mizuki Takahashi

Faculty Journal Articles

No abstract provided.

A Stable Niche Assumption-Free Test Of Ecological Divergence, Mizuki Takahashi, Jonathan M. Eastman, Duane Griffin, Jason Baumsteiger, Matthew J. Parris, Andrew Storfer

Faculty Journal Articles

No abstract provided.

Modelling Cholera In Periodic Environments, Drew Posny, Jin Wang

Mathematics & Statistics Faculty Publications

We propose a deterministic compartmental model for cholera dynamics in periodic environments. The model incorporates seasonal variation into a general formulation for the incidence (or, force of infection) and the pathogen concentration. The basic reproduction number of the periodic model is derived, based on which a careful analysis is conducted on the epidemic and endemic dynamics of cholera. Several specific examples are presented to demonstrate this general model, and numerical simulation results are used to validate the analytical prediction.

Ehrlichia And Spotted Fever Group Rickettsiae Surveillance In Amblyomma Americanum In Virginia Through Use Of A Novel Six-Plex Real-Time Pcr Assay, David N. Gaines, Darwin J. Operario, Suzanne Stroup, Ellen Stromdahl, Chelsea Wright, Holly Gaff, James Broyhill, Joshua Smith, Douglas E. Norris, Tyler Henning, Agape Lucas, Eric Houpt

Biological Sciences Faculty Publications

The population of the lone star tick Amblyomma americanum has expanded in North America over the last several decades. It is known to be an aggressive and nondiscriminatory biter and is by far the most common human-biting tick encountered in Virginia. Few studies of human pathogen prevalence in ticks have been conducted in our state since the mid-twentieth century. We developed a six-plex real-time PCR assay to detect three Ehrlichia species (E. chaffeensis, E. ewingii, and Panola Mountain Ehrlichia) and three spotted fever group Rickettsiae (SFGR; R. amblyommii, R. parkeri, and R. rickettsii …

Hidden Diversity In Sardines: Genetic And Morphological Evidence For Cryptic Species In The Goldstripe Sardinella, Sardinella Gibbosa (Bleeker, 1849), Rey C. Thomas, Demian A. Willette, Kent E. Carpenter, Mudjekeewis D. Santos

Biological Sciences Faculty Publications

Cryptic species continue to be uncovered in many fish taxa, posing challenges for fisheries conservation and management. In Sardinella gibbosa, previous investigations revealed subtle intra-species variations, resulting in numerous synonyms and a controversial taxonomy for this sardine. Here, we tested for cryptic diversity within S. gibbosa using genetic data from two mitochondrial and one nuclear gene regions of 248 individuals of S. gibbosa, collected from eight locations across the Philippine archipelago. Deep genetic divergence and subsequent clustering was consistent across both mitochondrial and nuclear markers. Clade distribution is geographically limited: Clade 1 is widely distributed in the central Philippines, while …

Basin Isolation And Oceanographic Features Influencing Lineage Divergence In The Humbug Damselfish (Dascyllus Aruanus) In The Coral Triangle, J. M. Raynal, E. D. Crandall, P. H. Barber, G. N. Mahardika, M. C. Lagman, Kent E. Carpenter

Biological Sciences Faculty Publications

The Coral Triangle is a hotspot for marine species diversity as well as for intraspecific genetic diversity. Here, we used nuclear RAG2 and mitochondrial D-Loop genes to identify deep genetic divergence among Dascyllus aruanus (Linnaeus, 1758) populations across relatively short scales within the Coral Triangle. Mitochondrial clades different by >20 mutational steps were completely isolated from one another across the distance between Java and the Lesser Sunda Islands, and also showed frequency differences in the eastern and western Philippines. Evidence for population structure in the Sulu Sea and at the Lesser Sunda Islands was also identified. Our results suggest that …

Quantitative Factors Proposed To Influence The Prevalence Of Canine Tick-Bourne Disease Agents In The United States, Roger W. Stich, Byron L. Blagburn, Dwight D. Bowman, Christopher Carpenter, M. Roberto Cortinas, Sidney A. Ewing, Desmond Foley, Holly Gaff, Graham J. Hickling, R. Ryan Lash

Biological Sciences Faculty Publications

The Companion Animal Parasite Council hosted a meeting to identify quantifiable factors that can influence the prevalence of tick-borne disease agents among dogs in North America. This report summarizes the approach used and the factors identified for further analysis with mathematical models of canine exposure to tick-borne pathogens.

So, You Want To Use Next Generation Sequencing In Marine Systems? Insight From The Pan Pacific Advanced Studies Institute, D. A. Willette, F. W. Allendorf, P. H. Barber, D. J. Barshis, K. E. Carpenter, E. D. Crandall, W. A. Cresko, I. Fernandez-Silva, M. V. Matz, E. Meyer, M. D. Santos, L. W. Seeb, J. E. Seeb

Biological Sciences Faculty Publications

The emerging field of next-generation sequencing (NGS) is rapidly expanding capabilities for cutting edge genomic research, with applications that can help meet marine conservation challenges of food security, biodiversity loss, and climate change. Navigating the use of these tools, however, is complex at best. Furthermore, applications of marine genomic questions are limited in developing nations where both marine biodiversity and threats to marine biodiversity are most concentrated. This is particularly true in Southeast Asia. The first Pan-Pacific Advanced Studies Institute (PacASI) entitled "Genomic Applications to Marine Science and Resource Management in Southeast Asia" was held in July 2012 in Dumaguete, …

Comparison Of Phenology And Pathogen Prevalence, Including Infection With The Ehrlichia Muris-Like (Eml) Agent, Of Ixodes Scapularis Removed From Soldiers In The Midwestern And Northeastern United States Over A 15 Year Period (1997-2012), Ellen Stromdahl, Sarah Hamer, Sarah Jenkins, Lynne Sloan, Phillip Williamson, Erik Foster, Robyn Nadolny, Chad Elkins, Mary Vince, Bobbi Pritt

Biological Sciences Faculty Publications

Background: Since 1997, human-biting ticks submitted to the Department of Defense Human Tick Test Kit Program (HTTKP) of the US Army Public Health Command have been tested for pathogens by PCR. We noted differences in the phenology and infection prevalence among Ixodes scapularis ticks submitted from military installations in different geographic regions. The aim of this study was to characterize these observed differences, comparing the phenology and pathogen infection rates of I. scapularis submitted from soldiers at two sites in the upper Midwest ( Camp Ripley, MN, and Ft. McCoy, WI) and one site in the northeastern US (Ft. Indiantown …

Host Behavior Alters Spiny Lobster-Viral Disease Dynamics: A Simulation Study, Thomas W. Dolan Iii, Mark J. Butler Iv, Jeffrey D. Shields

Biological Sciences Faculty Publications

Social behavior confers numerous benefits to animals but also risks, among them an increase in the spread of pathogenic diseases. We examined the trade-off between risk of predation and disease transmission under different scenarios of host spatial structure and disease avoidance behavior using a spatially explicit, individual-based model of the host pathogen interaction between juvenile Caribbean spiny lobster (Panulirus argus) and Panulirus argus Virus 1 (PaV1). Spiny lobsters are normally social but modify their behavior to avoid diseased conspecifics, a potentially effective means of reducing transmission but one rarely observed in the wild. We found that without lobster avoidance of …

Phylogeography Unplugged: Comparative Surveys In The Genomic Era, Brian W. Bowen, Kartik Shanker, Nina Yasuda, Maria Celia Malay, Sophie Von Der Heyden, Gustav Paulay, Luiz A. Rocha, Kimberly A. Selkoe, Paul H. Barber, Suzanne T. Williams, Harilaos A. Lessios, Eric D. Crandall, Giacomo Bernardi, Christopher P. Meyer, Kent E. Carpenter, Robert J. Toonen

Biological Sciences Faculty Publications

In March 2012, the authors met at the National Evolutionary Synthesis Center (NESCent) in Durham, North Carolina, USA, to discuss approaches and cooperative ventures in Indo-Pacific phylogeography. The group emerged with a series of findings: (1) Marine population structure is complex, but single locus mtDNA studies continue to provide powerful first assessment of phylogeographic patterns. (2) These patterns gain greater significance/power when resolved in a diversity of taxa. New analytical tools are emerging to address these analyses with multi-taxon approaches. (3) Genome-wide analyses are warranted if selection is indicated by surveys of standard markers. Such indicators can include discordance between …

Eat It: Sex, Food And Women's Writing [Book Review], Marc Ouellette

English Faculty Publications

Simply put, Eat It: Sex, Food and Women's Writing surpasses its rather immodest claims. This is no mean feat, for the editors allow that they have collected short stories, nonfiction shorts and poetry that, as the back claims offers, hinge "on the carnal." More than that, the gathered works purportedly address the ways in which experiencing food entails nothing short of "power, biology, social obligation, experimentation, nourishment, pain and pleasure." The authors treat the topics, ranging from the politics of potatoes to tricks for field dressing deer, with a blend of seriousness and humour befitting the material. What becomes clear …

Evolution Of The Freshwater Sardinella, Sardinella Tawilis (Clupeiformes: Clupeidae), In Taal Lake, Philippines And Identification Of Iits Marine Sister-Species, Sardinella Hualiensis, Demian Willette, Kent E. Carpenter, Mudjekeewis Santos

Biological Sciences Faculty Publications

We identify the sister species of the world's only freshwater sardinella, Sardinella tawilis (Herre, 1927) of Taal Lake, Philippines as the morphologically-similar marine Taiwanese sardinella Sardinella hualiensis (Chu and Tsai, 1958). Evidence of incomplete lineage sorting and a species tree derived from three mitochondrial genes and one nuclear gene indicate that S. tawilis diverged from S. hualiensis in the late Pleistocene. Neutrality tests, mismatch distribution analysis, sequence diversity indices, and species tree analysis indicate populations of both species have long been stable and that the divergence between these two lineages occurred prior to the putative 18th century formation of Taal …

[Review Of The Book Rare Birds Of North America, By N.G. Howell, Ian Lewington & Will Russell], Natasha D.G. Hagemeyer, Eric L. Walters

Biological Sciences Faculty Publications

No abstract provided.

Rheological Signatures In Limit Cycle Behaviour Of Dilute, Active, Polar Liquid Crystalline Polymers In Steady Shear, M. Gregory Forest, Panon Phuworawong, Qi Wang, Ruhai Zhou

Mathematics & Statistics Faculty Publications

We consider the dilute regime of active suspensions of liquid crystalline polymers (LCPs), addressing issues motivated by our kinetic model and simulations in Forest et al. (Forest et al. 2013 Soft Matter 9, 5207-5222 (doi:10.1039/c3sm27736d)). In particular, we report unsteady two-dimensional heterogeneous flow-orientation attractors for pusher nanorod swimmers at dilute concentrations where passive LCP equilibria are isotropic. These numerical limit cycles are analogous to longwave (homogeneous) tumbling and kayaking limit cycles and two-dimensional heterogeneous unsteady attractors of passive LCPs in weak imposed shear, yet these states arise exclusively at semi-dilute concentrations where stable equilibria are nematic. The results in Forest …

'Friend To The Martyr, A Friend To The Woman Of Shame': Thinking About The Law, Shame And Humiliation, Michael L. Perlin, Naomi Weinstein

Articles & Chapters

This paper considers the intersection between law, humiliation and shame, and how the law has the capacity to allow for, to encourage, or (in some cases) to remediate humiliation, or humiliating or shaming behavior. The need for new attention to be paid to this question has increased exponentially as we begin to also take more seriously international human rights mandates, especially – although certainly not exclusively – in the context of the recently-ratified United Nations Convention on the Rights of Persons with Disabilities, a Convention that calls for “respect for inherent dignity,” and characterizes "discrimination against any person on the …

Gladiolus Osmaniyensis (Iridaceae), A New Species From South Anatolia, Turkey, Mehmet Sağiroğlu, Gençay Akgül

Turkish Journal of Botany

A new species, Gladiolus osmaniyensis Sağıroğlu (Iridaceae), is described and illustrated from South Anatolia, Turkey. G. osmaniyensis is morphologically close to G. attilae and G. atroviolaceus. The ecology and phenology of the new species as well as its etymology, conservation status, and diagnostic morphological features are discussed. In addition, the seed surfaces of the G. osmaniyensis, G. attilae, and G. atroviolaceus are examined by SEM. The geographical distribution of the new species and the morphologically related species are mapped as well.

Morphology, Histochemistry, And Ultrastructure Of Foliar Mucilage-Producing Trichomes Of Harpagophytum Procumbens (Pedaliaceae), Yougasphree Naidoo, Samia Heneidak, Arvind Bhatt, Nazeera Kasim, Gonasageran Naidoo

Turkish Journal of Botany

The morphology, histochemistry, and ultrastructure of foliar mucilage-producing trichomes of Harpagophytum procumbens are investigated using a combination of light and electron microscopy. The leaves of H. procumbens bear short and long glandular trichomes comprising 1 or 2 basal epidermal cells, a stalk of 1-3 cells, a short neck cell, and a head of 2-5 cells. These trichomes are distributed on both leaf sides with a greater abundance on the abaxial side. Both types of trichomes secrete copious amounts of secretion as droplets onto the leaf surface, and the release occurs through micropores in the head cuticles. The secreted material is …

Interspecific In Vitro Hybridization In Genus Centaurium And Identification Of Hybrids Via Flow Cytometry, Rapd, And Secondary Metabolite Profiles, Tijana Banjanac, Branislav Siler, Marijana Skoric, Nabil Ghalawenji, Milica Milutinovic, Dragana Bozic, Danijela Misic

Turkish Journal of Botany

Most of the species from the genus Centaurium Hill readily hybridize between themselves in natural habitats. Artificial interspecific hybrid plants were obtained under in vitro conditions using reciprocal crosses between 4 species: Centaurium erythraea, C. littorale, C. maritimum, and C. pulchellum. Among 76 crossing experiments performed, 3 types of crosses produced seeds and gave 20 interspecific hybrid plants. Nuclear DNA quantification, fingerprinting of molecular markers, and determination of variation in main secondary metabolite content were employed to confirm their hybrid nature. All 3 approaches were capable of detecting hybrid plants. RAPD molecular markers proved to be the most reliable, always …

Expression Of Sod Gene And Evaluating Its Role In Stress Tolerance In Nacl And Peg Stressed Lycopersicum Esculentum, Semra Aydin, İlker Büyük, Emi̇ne Sümer Aras

Turkish Journal of Botany

Antioxidant enzyme mechanisms are important for protecting crop productivity against stressful environmental conditions. Therefore, the current study was designed to evaluate lipid peroxidation (via malondialdehyde (MDA)) levels, superoxide dismutase (SOD) gene expression profiles, and SOD enzyme activities in tomato (Lycopersicum esculentum L.) plants subjected to different concentrations (100 and 150 mM) and time periods of NaCl and polyethylene glycol (PEG) stress (3 h, 6 h, 9 h, 12 h, and 48 h). Enhancement of lipid peroxidation in plants may be attributed to the increased accumulation of reactive oxygen species (ROS). Results indicated the antioxidant responses of tomato plants could be …

Physiological Responses Of Transgenic Tobacco Plants Expressing The Dehydration-Responsive Rd22 Gene Of Vitis Vinifera To Salt Stress, Rahma Jardak Jamoussi, Mohamed Malek Elabbassi, Hatem Ben Jouira, Mohsen Hanana, Nejia Zoghlami, Abdelwahed Ghorbel, Ahmed Mliki

Turkish Journal of Botany

Salinity is one of the most common environmental stresses affecting grapevine productivity. In order to analyze the contribution of the dehydration-responsive RD22 gene of Vitis vinifera L. (VvRD22) to salt tolerance improvement, Agrobacterium-mediated transformation in the tobacco model plant (Nicotiana benthamiana) was carried out and transgenic lines were subjected to in vitro and ex vitro salt treatments for physiological response evaluation. Under in vitro salt stress, the transgenic lines exhibited higher seed germination and growth than the wild type (WT). The ex vitro assays after salt treatment showed better growth and higher chlorophyll content in VvRD22-expressing plants than in the …

Contrasting Inbreeding Depression In Early And Late Stages Of The Life Cycle Of A Mediterranean Shrub, Anagyris Foetida (Leguminosae), Francisco Javier Valtueña, Josefa López, Ana Ortega-Olivencia, Tomás Rodriguez-Riaño, Miguel González

Turkish Journal of Botany

Anagyris foetida L. has a Mediterranean distribution, but its populations are highly fragmented. This, together with its mixed mating system, puts it at clear risk of being strongly affected by inbreeding depression. To determine the effect of inbreeding depression in this species, hand pollinations were performed during the 2003/04 season in 2 populations from SW Spain to generate selfed and outcrossed seeds. These seeds were divided in 2 sample lots and seedlings were obtained in different years. During the first year of life the first lot showed no differences in vegetative parameters between the 2 populations, so that no differentiation …