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The Ecology Of Stomatopods In Matang Waters With Emphasis On Miyakea Nepa And Oratosquillina Perpensa / Ng Ying Pei, Ying Pei Ng

Student Works (2010-2019)

An ecological study of the adult and larvae of stomatopods was carried out in the estuary of the Matang Mangrove Forest Reserve (Malaysia) and its adjacent coastal waters. The study investigated the spatial and temporal distribution of the adult stomatopod population; estimated the various parameters of stomatopod population dynamics; and elucidated the reproduction biology, larval ecology and feeding habits of stomatopods. Monthly trawl surveys (from September 2004 to February 2006) of adult stomatopods revealed four stomatopod species of the family Squillidae. Miyakea nepa (Latreille, 1828) was the most abundant species (16.36±12.48 ind/ha; 65.41%) followed by Oratosquillina perpensa (Kemp. 1911) (6.63±10.74 …

Continental-Scale Assessment Of Genetic Diversity And Population Structure In Quaking Aspen (Populus Tremuloides), Colin M. Callahan, Carol A. Rowe, Ronald J. Ryel, John D. Shaw, Michael D. Madritch, Karen E. Mock

Wildland Resources Faculty Publications

Aim: Quaking aspen (Populus tremuloides) has the largest natural distribution of any tree native to North America. The primary objectives of this study were to characterize range-wide genetic diversity and genetic structuring in quaking aspen, and to assess the influence of glacial history and rear-edge dynamics.

Location: North America.

Methods: Using a sample set representing the full longitudinal and latitudinal extent of the species’ distribution, we examined geographical patterns of genetic diversity and structuring using 8 nuclear microsatellite loci in 794 individuals from 30 sampling sites.

Results: Two major genetic clusters were identified across the range: a southwestern cluster and …

Variation In Population Densities Of The Florida Scrub Lizard (Sceloporus Woodi) Between Managed Sand Pine Scrub And Longleaf Pine Stands In The Ocala National Forest, Matthew D. Kaunert

College of Graduate Studies: Theses & Dissertations

Population-level response to habitat fragmentation is central to applied species management and conservation. Managed landscapes are often subject to increased fragmentation and, consequently, may force once connected populations to function as metapopulations. Studies investigating metapopulations occurring over patchy, managed landscapes are of increasing importance as fragmentation is a known cause of biodiversity loss. In June-September 2012, populations of the rare, endemic Florida scrub lizard (Sceloporus woodi) were sampled across the Ocala National Forest (ONF) to compare abundance and density across two management types. In the ONF, sand-pine scrub is clearcut and rollerchopped whereas longleaf pine is managed via …

Polytopes Arising From Binary Multi-Way Contingency Tables And Characteristic Imsets For Bayesian Networks, Jing Xi

Theses and Dissertations--Statistics

The main theme of this dissertation is the study of polytopes arising from binary multi-way contingency tables and characteristic imsets for Bayesian networks.

Firstly, we study on three-way tables whose entries are independent Bernoulli ran- dom variables with canonical parameters under no three-way interaction generalized linear models. Here, we use the sequential importance sampling (SIS) method with the conditional Poisson (CP) distribution to sample binary three-way tables with the sufficient statistics, i.e., all two-way marginal sums, fixed. Compared with Monte Carlo Markov Chain (MCMC) approach with a Markov basis (MB), SIS procedure has the advantage that it does not require …

Predation As A Vehicle To Aid Tunicate Invasion In The Biofouling Community, Helen Day

Master's Theses and Capstones

Competition for space can influence community dynamics in the sessile biofouling community. Within recent decades, community dynamics have shifted towards a community dominated by tunicates. This research proposed predation as a mechanism driving this shift.

In the Gulf of Maine, the non-native species Botrylloides violaceous became abundant when predators (i.e. the benthic fish Tautogolabrus adspersus and the sea star Asterias rubens) removed the cryptogenic (i.e. native) tunicate Molgula citrina. Moreover, B. violaceus was present in higher amounts in habitats with low abundances of M. citrina than it was in areas in which the two tunicate species were both abundant. Furthermore, …

References From Landslide Ecology, Lawrence R. Walker, Aaron B. Shiels

United States Department of Agriculture Wildlife Services: Staff Publications

No abstract provided.

Spatiotemporal Patterns In Diet And Habitat Use Of Black-Legged Kittiwakes (Rissa Tridactyla) And Thick-Billed Murres (Uria Lomvia) In The Bering Sea, Nathan M. Jones

Master's Theses

This study quantified the multi-trophic influence and spatial structure of a cross-shelf δ15N gradient in the Bering Sea and used it to contrast foraging patterns and seasonal changes in niche width between thick-billed murres and black-legged kittiwakes during July and August, 2008 and 2009. Gut contents of collected seabirds were characterized and stable isotope analyses (δ13C, δ15N) were conducted on whole prey tissues and seabird cheek feathers, pectoral muscle, and liver tissues. Gut contents of both seabird species were spatially auto correlated and varied with habitat type. Feather and muscle tissues indicated that murres underwent a trophic niche contraction with …

Use Of Dna Sequences To Identify Forensically Important Fly Species In The Coastal Region Of Central California (Santa Clara County), Angela T. Nakano

Master's Theses

Forensic entomology has gained prominence in recent years, as improvements in DNA technology and molecular methods have allowed insect and other arthropod evidence to become increasingly useful in criminal and civil investigations. However, comprehensive faunal inventories are still needed, including cataloguing local DNA sequences for forensically significant Diptera. This multi-year fly-trapping study was built upon and expanded a previous survey of these flies in Santa Clara County, including the addition of genetic barcoding data from collected species of flies.

Flies from the families Calliphoridae, Sarcophagidae, and Muscidae were trapped in meat-baited traps set in a variety of locations throughout the …

Establishing Cognitive Legitimacy In Emerging Organizations: The Role Of Prestige, Cheryl R. Mitteness, Melissa S. Baucus, William I. Norton Jr.

Management: Faculty Publications

Entrepreneurs with venture ideas must establish cognitive legitimacy so they can acquire essential resources needed for survival. We extend the concept of cognitive legitimacy by developing a model through which entrepreneurs in emerging high growth organizations attempt to establish and build cognitive legitimacy. This is based on the composition of their new venture team and advisory board. Novice entrepreneurs can draw on the prestige of their new venture team and advisory board to enhance perceptions of their emerging organization's cognitive legitimacy. Novelty of the venture idea moderates relationships between both new venture team prestige and advisory board prestige and cognitive …

Microbial Community Analysis Of Swine Wastewater Anaerobic Lagoons By Next-Generation Dna Sequencing, Thomas F. Ducey, Patrick G. Hunt

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Anaerobic lagoons are a standard practice for the treatment of swine wastewater. This practice relies heavily on microbiological processes to reduce concentrated organic material and nutrients. Despite this reliance on microbiological processes, research has only recently begun to identify and enumerate the myriad and complex interactions that occur in this microbial ecosystem. To further this line of study, we utilized a next-generation sequencing (NGS) technology to gain a deeper insight into the microbial communities along the water column of four anaerobic swine wastewater lagoons. Analysis of roughly one million 16S rDNA sequences revealed a predominance of operational taxonomic units (OTUs) …

Geomorphic-Vegetation Relationships Using A Geopedological Classification System, Northern Chihuahuan Desert, Usa, G.A. Michaud, H.C. Monger, D.L. Anderson

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Drylands typically have distinctive vegetative patterns that reflect the underlying physical landscape. We use a geopedological classification to organize the landscape into five categories from broad scale to fine scale: (1) physiographic divisions which describe regional topography, such as mountains and basin floors; (2) regolith type which identifies residuum versus transported sediments; (3) parent materials which describe mineralogy; (4) landforms which provide meso-scale descriptions of topography; and (5) soil texture, a fine-scale variable important for infiltration, erodibility, and available water holding capacity. The study was conducted in a 1753 km² area of the White Sands Missile Range and …

Landslide Ecology, Lawrence R. Walker, Aaron B. Shiels

United States Department of Agriculture Wildlife Services: Staff Publications

Despite their often dangerous and unpredictable nature, landslides provide fascinating templates for studying how soil organisms, plants, and animals respond to such destruction. The emerging field oflandslide ecology helps us to understand these responses, aiding slope stabilization and restoration and contributing to progress made in geological approaches to landslide prediction and mitigation. Summarizing the growing body ofliterature on the ecological consequences of landslides, this book provides a framework for the promotion of ecological tools in predicting, stabilizing, and restoring biodiversity to landslide scars at both local and landscape scales. It explores nutrient cycling; soil development; and how organisms disperse, colonize, …

Investigating Phosphorus And Turbidity Removal Efficiencies Of Main Aquatic Vegetation Species In The Lower Kelkit Basin Of Turkey, Ekrem Buhan, Hakan Mete Doğan, Sali̇ha Di̇ri̇m Buhan, Sai̇m Özdemi̇r, Fati̇h Polat, Çi̇sem Ni̇ldem Doğan

Turkish Journal of Botany

In this study, we researched the main aquatic vegetation (AV) species and their orthophosphate and turbidity removal efficiencies in the Lower Kelkit Basin of Turkey. We chose an experimental area (1650 m^2) in the field and determined orthophosphate (mg/L) and turbidity (NTU) variables at the charging and discharging points between November 2005 and March 2006. We also applied an experimental design including 9 treatments and 3 replications in aquarium conditions. Orthophosphate (mg/L) contents of each aquarium were measured at 6 time periods (initial measurement and days 1, 4, 9, 16, and 25). Ceratophyllum demersum L., Cladophora glomerata (L.) Kützing, Lemna …

Morphological And Ecological Evidence For A New Infraspecific Taxon Of The Wallflower Erysimum Cheiri (Brassicaceae) As An Indigenous Endemism Of The Southwestern Mediterranean, Samira Ouarmim, Chloe Dubset, Errol Vela

Turkish Journal of Botany

The wallflower Erysimum cheiri is a horticultural cruciferous growing as garden-escaped with a wide distribution in West and South Europe. In Algeria, it is locally found on the northern cliffs of the National Park of Gouraya (Kabylia). The aim of this study is to compare the populations of E. cheiri identified in Algeria with those found in Mediterranean France. To study the differences between both sites, a morphological and ecological analysis was undertaken on 6 populations growing in Algeria and France. Ecological communities where wallflower is growing in Algeria are dominated by indigenous plants with a significant proportion of endemic …

Monitoring Of Vascular Plant Diversity In A Changing Climate In The Alpine Zone Of The Central Greater Caucasus, Khatuna Gigauri, Maia Akhalkatsi, George Nakhutsrishvili, Otar Abdaladze

Turkish Journal of Botany

Short-term changes in plant species number, cover, frequency, and composition were studied along an altitudinal gradient crossing 4 GLORIA summits (from 2240 m to 3024 m a.s.l.) from the treeline ecotone to the subnival zone in the Central Caucasus. Large-scale (summit area) and small-scale (16 plots of 1 m^{2}/summit) patterns were monitored in 2001. Recording was repeated in 2008. During the monitoring period, the average soil temperature and growing-degree days did not significantly increase. After 7 years, a revisitation of the summit area revealed a considerable increase of species richness, especially at the lower alpine zone (CP1 and CP2 summits). …

Non Target Effect Of Cry1 Ab And Cry Ab X Cry3 Bb1 Bt Transgenic Maize On Orius Insidiosus (Hemiptera: Anthocoridae) Abundance, Santiago A. Palizada, Difabachew K. Belay, Bamphitlhi Tiroesele, Fatima Mustafa, Muhammad Ullah, Thomas Hunt, Jaime Molina-Ochoa, S. R. Skoda, Pete L. Clark, John E. Foster

Department of Entomology: Faculty Publications

Non-target effects of Cry1Ab x CP4 EPSPS and Cry1Ab+Cry3Bb1×CP4 EPSPS Bt transgenic new maize hybrids on insidious flower bugs [Orius insidiosus (Say)] was studied in Nebraska (Mead, C lay Center, and Concord) during 2007 and 2008. The Bt effect was compared to CP4 EPSPS maize (isoline), conventional maize, and insecticide applications of permethrin (Pounce® 1.5G) and bifenthrin (Capture® 2EC) to control first and second generations of Ostrinia nubilalis (Hübner), respectively. Yellow sticky cards, visual observations, and destructive samplings were used to evaluate O. insidiosus abundance. The yellow sticky card data in 2007 showed that O. insidiosus abundance was lower …

Regional Contingencies In The Relationship Between Aboveground Biomass And Litter In The World’S Grasslands, Lydia R. O’Halloran, Elizabeth T. Borer, Eric W. Seabloom, Andrew S. Macdougall, Elsa E. Cleland, Rebecca L. Mcculley, Sarah Hobbie, W. Stanley Harpole, Nicole M. Decrappeo, Chengjin Chu, Jonathan D. Bakker, Kendi F. Davies, Guozhen Du, Jennifer Firn, Nicole Hagenah, Kirsten S. Hofmockel, Johannes Knops, Wei Li, Brett A. Melbourne, John W. Morgan, John L. Orrock, Suzanne M. Prober, Carly J. Stevens

School of Biological Sciences: Faculty Publications

Based on regional-scale studies, aboveground production and litter decomposition are thought to positively covary, because they are driven by shared biotic and climatic factors. Until now we have been unable to test whether production and decomposition are generally coupled across climatically dissimilar regions, because we lacked replicated data collected within a single vegetation type across multiple regions, obfuscating the drivers and generality of the association between production and decomposition. Furthermore, our understanding of the relationships between production and decomposition rests heavily on separate meta-analyses of each response, because no studies have simultaneously measured production and the accumulation or decomposition of …

Diversification Under Sexual Selection: The Relative Roles Of Mate Preference Strength And The Degree Of Divergence In Mate Preferences, Rafael L. Rodríguez, Janette W. Boughman, David A. Gray, Eileen A. Hebets, Gerlinde Höbel, Laurel B. Symes

Eileen Hebets Publications

The contribution of sexual selection to diversification remains poorly understood after decades of research. This may be in part because studies have focused predominantly on the strength of sexual selection, which offers an incomplete view of selection regimes. By contrast, students of natural selection focus on environmental differences that help compare selection regimes across populations. To ask how this disparity in focus may affect the conclusions of evolutionary research, we relate the amount of diversification in mating displays to quantitative descriptions of the strength and the amount of divergence in mate preferences across a diverse set of case studies of …

Long-Term Nitrogen Amendment Alters The Diversity And Assemblage Of Soil Bacterial Communities In Tallgrass Prairie, Joseph D. Coolon, Kenneth L. Jones, Timothy C. Todd, John M. Blair, Michael A. Herman

School of Biological Sciences: Faculty Publications

Anthropogenic changes are altering the environmental conditions and the biota of ecosystems worldwide. In many temperate grasslands, such as North American tallgrass prairie, these changes include alteration in historically important disturbance regimes (e.g., frequency of fires) and enhanced availability of potentially limiting nutrients, particularly nitrogen. Such anthropogenically-driven changes in the environment are known to elicit substantial changes in plant and consumer communities aboveground, but much less is known about their effects on soil microbial communities. Due to the high diversity of soil microbes and methodological challenges associated with assessing microbial community composition, relatively few studies have addressed specific taxonomic changes …

Nitrogen Uptake Strategies Of Edaphically Specialized Bornean Tree Species, Sabrina E. Russo, Amy Kochsiek, Jocelyn Olney, Lauren Thompson, Amy E. Miller, Sylvester Tan

School of Biological Sciences: Faculty Publications

The association of tree species with particular soil types contributes to high b diversity in forests, but the mechanisms producing such distributions are still debated. Soil nitrogen (N) often limits growth and occurs in differentially available chemical forms. In a Bornean forest where tree species composition changes dramatically along a soil gradient varying in supplies of different N-forms, we investigated whether tree species’ N-uptake and soil specialization strategies covaried. We analyzed foliar ¹⁵N natural abundance for a total of 216 tree species on clay or sandy loam (the soils at the gradient’s extremes) and conducted a ¹⁵N-tracer experiment …

Small Geographic Range But Not Panmictic: How Forests Structure The Endangered Point Arena Mountain Beaver (Aplodontia Rufa Nigra), William J. Zielinski, Fredrick V. Schlexer, Sean A. Parks, Kristine L. Pilgrim, Michael K. Schwartz

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

The landscape genetics framework is typically applied to broad regions that occupy only small portions of a species’ range. Rarely is the entire range of a taxon the subject of study. We examined the landscape genetic structure of the endangered Point Arena mountain beaver (Aplodontia rufa nigra), whose isolated geographic range is found in a restricted (85 km²) but heterogenous region in California. Based on its diminutive range we may predict widespread gene flow and a relatively weak role for landscape variation in defining genetic structure. We used skin, bone, tissue and noninvasively collected hair samples …

Laboratory Efficacy Of An Anthraquinone-Based Repellent For Reducing Bird Damage To Ripening Corn, James C. Carlson, Shelagh K. Tupper, Scott J. Werner, Susan E. Pettit, Michele M. Santer, George M. Linz

United States Department of Agriculture Wildlife Services: Staff Publications

Wildlife repellents provide a non-lethal alternative for managing agricultural impacts associated with wildlife depredation. To evaluate a potential bird repellent for ripening corn, we conducted a feeding experiment at the United States Department of Agriculture, National Wildlife Research Center with 66 red-winged blackbirds (Agelaius phoeniceus). Using a two-choice experimental design we tested the efficacy of Avipel repellent (a.i. 50% 9,10-anthraquinone) on ripening sweet corn. Red-winged blackbirds consumed an average of 8.6% ± 0.9% of kernels from untreated ears and 5.3% ± 1.1% from ears treated with anthraquinone. The interaction between anthraquinone concentration and corn treatment suggests a positive …

Stream Hierarchy Defines Riverscape Genetics Of A North American Desert Fish, Matthew W. Hopken, Marlis R. Douglas, Michael E. Douglas

United States Department of Agriculture Wildlife Services: Staff Publications

Global climate change is apparent within the Arctic and the south-western deserts of North America, with record drought in the latter reflected within 640 000 km2 of the Colorado River Basin. To discern the manner by which natural and anthropogenic drivers have compressed Basin-wide fish biodiversity, and to establish a baseline for future climate effects, the Stream Hierarchy Model (SHM) was employed to juxtapose fluvial topography against molecular diversities of 1092 Bluehead Sucker (Catostomus discobolus). MtDNA revealed three geomorphically defined evolutionarily significant units (ESUs): Bonneville Basin, upper Little Colorado River and the remaining Colorado River Basin. Microsatellite analyses …

Effects Of Drought, Temperature, Herbivory, And Genotype On Plant–Insect Interactions In Soybean (Glycine Max), Rose Grinnan, Thomas E. Carter Jr., Marc T. J. Johnson

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Climate change is predicted to cause continued increases in global temperatures, greater variability in precipitation and in some cases, more frequent insect pest outbreaks. Here we seek to understand how abiotic and biotic stresses associated with climate change can affect plant-herbivore interactions in a model crop species (soybean, Glycine max (L.) Merr.) by answering three questions: (1) Do the combined effects of abiotic and biotic stresses associated with climate change cause synergistic negative effects on plant biomass? (2) Can abiotic stress affect resistance of plants to insect herbivores? (3) Does genetic variation in plant traits modify a plant’s response to …

Graphically Characterizing The Movement Of A Rabid Striped Skunk Epizootic Across The Landscape In Northwestern Wyoming, Craig A. Ramey, Kenneth W. Mills, Justin W. Fischer, Robert G. Mclean, Kathleen A. Fagerstone, Richard M. Engeman

United States Department of Agriculture Wildlife Services: Staff Publications

A striped skunk (Mephitis mephitis) rabies epizootic in northwestern Wyoming was studied from the Index Case in 1988 to the last case in 1993, and possibly is the first rabies epizootic in a previously rabies-free zone monitored from beginning to end. The 843 km² study area comprised skunk habitat along 90 km of Shoshone River’s floodplain from Bighorn Lake upstream to Cody. Of 1,015 skunks tested, 215 were rabiespositive. Integrating spatial and temporal data from positive cases, we analyzed the epizootic’s movements and dynamics at 6-month intervals using multivariate movement maps, a new multivariate descriptive methodology presented …

Den Attendance Patterns In Swift Foxes During Pup Rearing: Varying Degrees Of Parental Investment Within The Breeding Pair, Sharon A. Poessel, Eric M. Gese

United States Department of Agriculture Wildlife Services: Staff Publications

Parental investment varies inmammalian species, with male care of young being more common in social and monogamous species. Monogamy is commonly observed in canid species, with both males and females, and often ‘‘helper’’ individuals, providing some degree of care for the young. Social units of the swift fox (Vulpes velox), a small North American canid species, usually consist of a male– female pair and occasionally helpers. The role of parental investment and behavior in swift fox society is currently poorly understood. We observed swift fox dens during the pup-rearing season in each of 2 years to evaluate attendance …

Response Of Palila And Other Subalpine Hawaiian Forest Bird Species To Prolonged Drought And Habitat Degradation By Feral Ungulates, Paul C. Banko, Richard J. Camp, Chris Farmer, Kevin W. Brinck, David L. Leonard, Robert M. Stephens

United States Geological Survey: Staff Publications

Extinction has claimed half of all historically-known Hawaiian passerines, and today many extant species are increasingly threatened due to the combined effects of invasive species and climate change. Habitat disturbance has affected populations of feeding specialists most profoundly, and our results indicate that specialists continue to be most vulnerable, although even some abundant, introduced, generalist species also may be affected. Surveys of passerines during 1998–2011 in subalpine woodland habitat on Mauna Kea Volcano, Island of Hawai'i, revealed that the abundance of the critically endangered palila (Loxioides bailleui), a seed specialist, declined by 79% after 2003. The 'akiapōlā'au ( …

Chapter 5 Biotic Interactions And Temporal Patterns Forlandslide Ecology, Lawrence R. Walker, Aaron B. Shiels

United States Department of Agriculture Wildlife Services: Staff Publications

1. Landslide succession is the sequential replacement of plant communities following landslide creation. It is affected by biotic interactions and abiotic conditions and occurs in the intervals between recurrent erosion events.

2. Plant species can facilitate or inhibit landslide succession by direct species interactions or indirectly by the alteration of resources including light levels, soil stability, soil moisture, or soil nutrients. Species replacements may also occur due to differences in the life histories of landslide colonizers.

3. Herbivores, pathogens, and non-native species influence landslide succession and contribute to the variety of successional trajectories found on landslides, potentially with long-term consequences. …

A Global Standard For Monitoring Coastal Wetland Vulnerability To Accelerated Sea-Level Rise, Edward L. Webb, Daniel A. Friess, Ken W. Krauss, Donald R. Cahoon, Glenn R. Guntenspergen, Jacob Phelps

United States Geological Survey: Staff Publications

Sea-level rise threatens coastal salt-marshes and mangrove forests around the world, and a key determinant of coastal wetland vulnerability is whether its surface elevation can keep pace with rising sea level. Globally, a large data gap exists because wetland surface and shallow subsurface processes remain unaccounted for by traditional vulnerability assessments using tide gauges. Moreover, those processes vary substantially across wetlands, so modelling platforms require relevant local data. The low-cost, simple, high-precision rod surface-elevation table–marker horizon (RSET-MH) method fills this critical data gap, can be paired with spatial data sets and modelling and is financially and technically accessible to every …

Chemical Defense Of An Asian Snake Reflects Local Availability Of Toxic Prey And Hatchling Diet, D. A. Hutchinson, A. H. Savitzky, G. M. Burghardt, C. Nguyen, J. Meinwald, F. C. Schroeder, A. Mori

Biological Sciences Faculty Publications

Species that sequester toxins from prey for their own defense against predators may exhibit population-level variation in their chemical arsenal that reflects the availability of chemically defended prey in their habitat. Rhabdophis tigrinus is an Asian snake that possesses defensive glands in the skin of its neck (nuchal glands'), which typically contain toxic bufadienolide steroids that the snakes sequester from consumed toads. In this study, we compared the chemistry of the nuchal gland fluid of R.tigrinus from toad-rich and toad-free islands in Japan and determined the effect of diet on the nuchal gland constituents. Our findings demonstrate that captive-hatched juveniles …