Digital Commons Network^™

Advances And Future Challenges In Adenoviral Vector Pharmacology And Targeting, Reeti Khare, Christopher Y. Chen, Eric A. Weaver, Michael A. Barry

Nebraska Center for Virology: Faculty Publications

Adenovirus is a robust vector for therapeutic applications, but its use is limited by our understanding of its complex in vivo pharmacology. In this review we describe the necessity of identifying its natural, widespread, and multi-faceted interactions with the host since this information will be crucial for efficiently redirecting virus into target cells. In the rational design of vectors, the notion of overcoming a sequence of viral “sinks” must be combined with re-targeting to target populations with capsid as well as shielding the vectors from pre-existing or toxic immune responses. It must also be noted that most known adenoviral pharmacology …

Missouri River Recovery Program Emergent Sandbar Habitat Annual Adaptive Management Report, Year 1, 2010)

United States Army Corps of Engineers, Omaha District

This Adaptive Management (AM) Report for Emergent Sandbar Habitat (ESH) represents the first complete iteration within the draft AM strategy being implemented for the interior least terns (Sternula antillarum) and piping plovers (Charadrius melodus) within the Missouri River Mainstem System based on the 2003 Amended Biological Opinion (BiOp). Please refer to the ESH AM Strategy - Appendix H of the Draft ESH Programmatic Environmental Impact Statement (PEIS) – and the Missouri River Recovery Program (MRRP) AM Process Framework for detailed background information on the overall scope and approach of this effort. Also note that as more …

Assessment Of Shape Memory Alloy Stent Deployment In A Stenosed Artery, Shijia Zhao, Linxia Gu, Stacey R. Froemming

Department of Mechanical and Materials Engineering: Faculty Publications

Purpose — Shape memory alloy (SMA) stents have been used increasingly for the treatment of complex arterial occlusions. There is an immediate need to quantify the mechanical performance of SMA stents to open occluded arteries.
Methods — The stent crimping and expanding process was assessed through both numerical modeling and in-vitro studies. The implantation of a SMA stent in curved arteries with eccentric stenosis were simulated to evaluate the effect of artery curvature on arterial mechanics.
Results — The crimping process stored a considerable amount of strain energy in the stent, which were then released through self-expansion until a balance …

Modeling Dynamic Fracture And Damage In A Fiber-Reinforced Composite Lamina With Peridynamics, Wenke Hu, Youn Doh Ha, Florin Bobaru

Department of Mechanical and Materials Engineering: Faculty Publications

We propose a peridynamic formulation for a unidirectional fiber-reinforced composite lamina based on homogenization and mapping between elastic and fracture parameters of the micro-scale peridynamic bonds and the macro-scale parameters of the composite. The model is then used to analyze the splitting mode (mode II) fracture in dynamic loading of a 0° lamina. Appropriate scaling factors are used in the model in order to have the elastic strain energy, for a fixed nonlocal interaction distance (the peridynamic horizon), match the classical one. No special criteria for splitting failure are required to capture this fracture mode in the lamina. Convergence studies …

Adaptive Refinement And Multiscale Modeling In 2d Peridynamics, Florin Bobaru, Youn Doh Ha

Department of Mechanical and Materials Engineering: Faculty Publications

The original peridynamics formulation uses a constant nonlocal region, the horizon, over the entire domain. We propose here adaptive refinement algorithms for the bond-based peridynamic model for solving statics problems in two dimensions that involve a variable horizon size. Adaptive refinement is an essential ingredient in concurrent multiscale modeling, and in peridynamics changing the horizon is directly related to multiscale modeling. We do not use any special conditions for the “coupling” of the large and small horizon regions, in contrast with other multiscale coupling methods like atomistic-to-continuum coupling, which require special conditions at the interface to eliminate ghost forces in …

Control Of Glucosylceramide Production And Morphogenesis By The Bar1 Ceramide Synthase In Fusarium Graminearum, William B. Rittenour, Ming Chen, Edgar B. Cahoon, Steven D. Harris

Department of Plant Pathology: Faculty Publications

The contribution of plasma membrane proteins to the virulence of plant pathogenic fungi is poorly understood. Accordingly, the objective of this study was to characterize the acyl-CoA dependent ceramide synthase Bar1 (previously implicated in plasma membrane organization) in the wheat pathogen Fusarium graminearum. The role of Bar1 in mediating cell membrane organization was confirmed as DBAR1 mutants failed to display a distinct sterol-rich domain at the hyphal tip. The DBAR1 mutants were non-pathogenic when inoculated onto wheat heads, and their in vitro growth also was severely perturbed. DBAR1 mutants were incapable of producing perithecia (sexual fruiting structures) and only produced …

The Sugar Sensor, Trehalose-6-Phosphate Synthase (Tps1), Regulates Primary And Secondary Metabolism During Infection By The Rice Blast Fungus: Will Magnaporthe Oryzae’S “Sweet Tooth” Become Its “Achilles’ Heel”?, Jesse Fernandez, Richard Wilson

Department of Plant Pathology: Faculty Publications

Rice blast disease is considered one of the most serious diseases of cultivated rice and is mediated by the causal agent, Magnaporthe oryzae. During infection, dome-shaped fungal cells, called appressoria, form on the surface of the leaf and generate turgor through the accumulation of glycerol. This enormous pressure is directed down onto a thin penetration hypha emerging from the base of the cell, forcing it through the surface of the rice leaf and allowing fungal colonization of the plant interior. The non-reducing disaccharide, trehalose, is present in conidia of M. oryzae and is mobilized during appressorium formation. The first …

Mechanisms For Decisions About The Future, Jeffrey R. Stevens

Jeffrey Stevens Publications

Evolutionary and psychological perspectives on decision making remain largely separate endeavors. The bounded rationality approach integrates these two perspectives by focusing on simple, plausible mechanisms of decision making and the cognitive capacities needed to implement these mechanisms. Decisions about the future provide a class of decisions that lend themselves to a bounded rationality approach. Though many different mechanisms may exist for making decisions about the future, only a subset of these mechanisms actually require a representation of the future. The bounded rationality approach helps focus on the cognitive capacities and decision mechanisms that are necessary for a full understanding of …

Some Laelapine Mites (Acari: Laelapidae) Ectoparasitic On Small Mammals In The Galapagos Islands, Including A New Species Of Gigantolaelaps From Aegialomys Galapagoensis, Donald D. Gettinger, Fernanda Martins-Hatano, Scott Lyell Gardner

Scott L. Gardner Publications

A collection of laelapine mites from small mammals in the Galapagos Islands are identified and their host distributions reviewed. Two species of native rodents, Aegialomys galapagoensis and Nesoryzomys narboroughii, were infested only with species typical of Neotropical oryzomyine rodents; Rattus rattus was infested with Laelaps nuttalli, a host-specific ectoparasite to Old World Rattus. A synopsis of Gigantolaelaps Fonseca is provided and we describe a new laelapine mite, Gigantolaelaps aegialomys n. sp., from the pelage of the rodent A. galapagoensis on Santa Fe Island. The new species has strong morphological affinities with a subgroup of Gigantolaelaps associated …

Mechanisms Of Contact-Mediated Killing Of Yeast Cells On Dry Metallic Copper Surfaces, Davide Quaranta, Travis Krans, Christophe Espirito Santo, Christian Elowsky, Dylan W. Domaille, Christopher J. Chang, Gregor Grass

Department of Plant Pathology: Faculty Publications

Surfaces made of copper or its alloys have strong antimicrobial properties against a wide variety of microorganisms. However, the molecular mode of action responsible for the antimicrobial efficacy of metallic copper is not known. Here, we show that dry copper surfaces inactivate Candida albicans and Saccharomyces cerevisiae within minutes in a process called contact-mediated killing. Cellular copper ion homeostasis systems influenced the kinetics of contact-mediated killing in both organisms. Deregulated copper ion uptake through a hyperactive S. cerevisiae Ctr1p (ScCtr1p) copper uptake transporter in Saccharomyces resulted in faster inactivation of mutant cells than of wild-type cells. Similarly, lack of the …

Carbenoxolone Blocks The Light-Evoked Rise In Intracellular Calcium In Isolated Melanopsin Ganglion Cell Photoreceptors, Jayne R. Bramley, Erin M. Wiles, Patricia J. Sollars, Gary E. Pickard

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: Retinal ganglion cells expressing the photopigment melanopsin are intrinsically photosensitive (ipRGCs). These ganglion cell photoreceptors send axons to several central targets involved in a variety of functions. Within the retina ipRGCs provide excitatory drive to dopaminergic amacrine cells via glutamatergic signals and ipRGCs are coupled to widefield GABAergic amacrine cells via gap junctions. However, the extent to which ipRGCs are coupled to other retinal neurons in the ganglion cell layer via gap junctions is unclear. Carbenoxolone, a widely employed gap junction inhibitor, greatly reduces the number of retinal neurons exhibiting non-rod, non-cone mediated light-evoked Ca²⁺ signals suggesting extensive …

Regulation Of The Latency–Reactivation Cycle By Products Encoded By The Bovine Herpesvirus 1 (Bhv-1) Latency-Related Gene, Clinton Jones, Leticia Frizzo Da Silva, Devis Sinani

School of Veterinary and Biomedical Sciences: Faculty Publications

Like other α-herpesvirinae subfamily members, the primary site for bovine herpesvirus 1 (BHV-1) latency is ganglionic sensory neurons. Periodically BHV-1 reactivates from latency, virus is shed, and consequently virus transmission occurs. Transcription from the latency-related (LR) gene is readily detected in neurons of trigeminal ganglia (TG) of calves or rabbits latently infected with BHV-1. Two micro-RNAs and a transcript encompassing a small open reading frame (ORF-E) located within the LR promoter can also be detected in TG of latently infected calves. A BHV-1 mutant that contains stop codons near the beginning of the first open reading frame (ORF2) within the …

Intrinsically Photosensitive Retinal Ganglion Cells, Gary E. Pickard, Patricia J. Sollars

School of Veterinary and Biomedical Sciences: Faculty Publications

Intrinsically photosensitive retinal ganglion cells (ipRGCs) respond to light in the absence of all rod and cone photoreceptor input. The existence of these ganglion cell photoreceptors, although predicted from observations scattered over many decades, was not established until it was shown that a novel photopigment, melanopsin, was expressed in retinal ganglion cells of rodents and primates. Phototransduction in mammalian ipRGCs more closely resembles that of invertebrate than vertebrate photoreceptors and appears to be mediated by transient receptor potential channels. In the retina, ipRGCs provide excitatory drive to dopaminergic amacrine cells and ipRGCs are coupled to GABAergic amacrine cells via gap …

Long-Term Clinicopathological Characteristics Of Alpacas Naturally Infected With Bovine Viral Diarrhea Virus Type Ib, D. Bedenice, Edward J. Dubovi, Clayton Kelling, Jamie N Henningson, Christina L. Topliff, N. Parry

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: Substantial bovine viral diarrhea virus (BVDV)-related production losses in North American alpaca herds have been associated with BVDV type Ib infection.

Objectives: To classify and differentiate the long-term clinicopathological characteristics of BVDV type Ib infection of al- paca crias, after natural virus exposure. We hypothesized that persistently infected (PI) alpacas specifically demonstrate growth retardation, clinicopathological evidence of opportunistic infections, and early mortality.

Animals: Thirty-five crias naturally exposed to BVDV (18 acute, 3 chronic, 14 PIs), and 19 healthy cohort controls of 5 northeastern alpaca farms were prospectively evaluated over 2 years (September 2005–September 2008).

Methods: Observational cohort-control study.

Results: …

Consensus-Based Reporting Standards For Diagnostic Test Accuracy Studies For Paratuberculosis In Ruminants, Ian A. Gardner, Søren S. Nielsen, Richard J. Wittington, Michael T. Collins, Douwe Bakker, Beth Harris, Srinand Sreevatsan, Jason E. Lombard, Raymond Sweeney, David R. Smith, Jerrie Gavalchin, Shigetoshi Eda

School of Veterinary and Biomedical Sciences: Faculty Publications

The Standards for Reporting of Diagnostic Accuracy (STARD) statement was developed to encourage complete and transparent reporting of key elements of test accuracy studies in human medicine. The statement was motivated by widespread evidence of bias in test accuracy studies and the finding that incomplete or absent reporting of items in the STARD checklist was associated with overly optimistic estimates of test performance characteristics. Although STARD principles apply broadly, specific guidelines do not exist to account for unique considerations in livestock studies such as herd tests, potential use of experimental challenge studies, a more diverse group of testing purposes and …

Hidden Susy At The Lhc: The Light Higgsino-World Scenario And The Role Of A Lepton Collider, Howard Baer, Vernon Barger, Peisi Huang

Department of Physics and Astronomy: Faculty Publications

While the SUSY flavor, CP and gravitino problems seem to favor a very heavy spectrum of matter scalars, fine-tuning in the electroweak sector prefers low values of superpotential mass μ. In the limit of low μ, the two lightest neutralinos and light chargino are higgsino-like. The light charginos and neutralinos may have large production cross sections at LHC, but since they are nearly mass degenerate, there is only small energy release in three-body sparticle decays. Possible dilepton and trilepton signatures are difficult to observe after mild cuts due to the very soft _PT spectrum of the final state …

In Memoriam Robert Katz (1917–2011), Michael P. R. Waligorski, Francis A. Cucinotta

Department of Physics and Astronomy: Faculty Publications

Dr. Robert (Bob) Katz, emeritus professor of physics at the University of Nebraska, author of the Katz Model, a deceptively simple but profound parametric model of the action of charged particles on physical and biological systems, died peacefully at his home at Lincoln, NE, on March 12, 2011, after a brief illness. Bob, born in New York City in 1917, and his sister Gladys, were of immigrant Russian Jewish descent. Their parents owned a delicatessen in the Bronx, not far from the Yankee Stadium, where, as Bob recalled, Babe Ruth stopped by for hot dogs, a huge man driving a …

Colossal Negative Magnetoresistance In Dilute Fluorinated Graphene, X. Hong, S.-H. Cheng, C. Herding, J. Zhu

Xia Hong Publications

Adatoms offer an effective route to modify and engineer the properties of graphene. In this work, we create dilute fluorinated graphene using a clean, controlled, and reversible approach. At low carrier densities, the system is strongly localized and exhibits an unexpected, colossal negative magnetoresistance. The zero-field resistance is reduced by a factor of 40 at the highest field of 9 T and shows no sign of saturation. Unusual staircaselike field dependence is observed below 5 K. The magnetoresistance is highly anisotropic. These observations cannot be explained by existing theories, but likely require adatom-induced magnetism and/or a metal-insulator transition driven by …

Are There Superspin Glasses?, Ralph Skomski

Ralph Skomski Publications

The effect of magnetostatic and exchange interactions on the spin structure of interacting nanoparticles and granular nanomagnets is investigated by model calculations. Effective exchange stiffnesses for inhomogeneous media are defined and determined for some geometries and interactions, and it is argued that typical ensembles of interacting small nanoparticles are micromagnetic systems rather than superspin glasses or superferromagnets. The spin structures of granular magnets often have the character of interaction domains, with far-reaching implications for magnetic phenomena such as hysteresis-loop overskewing.

Ultrafast Rempi In Benzene And The Monohalobenzenes Without The Focal Volume Effect, Timothy D. Scarborough, James Strohaber, David B. Foote, Collin J. Mcacy, Cornelis J. Uiterwaal

C.J.G.J. Uiterwaal Publications

We report on the photoionization and photofragmentation of benzene (C₆H₆) and of the monohalobenzenes C₆H₅–X (X = F, Cl, Br, I) under intense-field, single-molecule conditions. We focus 50-fs, 804-nm pulses from a Ti:sapphire laser source, and record ion mass spectra as a function of intensity in the range ~10¹³ W/cm² to ~10¹⁵ W/cm². We count ions that were created in the central, most intense part of the focal area; ions from other regions are rejected. For all targets, stable parent ions (C₆H₅X+) are …

An Ideal Combination For Marine Turtle Conservation: Exceptional Nesting Season, With Low Nest Predation Resulting From Effective Low-Cost Predator Management, Richard M. Engeman, R. Erik Martin, John Woolard, Margo Stahl, Charles Pelizza, Anthony Duffiney, Bernice Constantin

United States Department of Agriculture Wildlife Services: Staff Publications

We examined impacts from effective predator management on nesting success of marine turtles in an exceptional nesting year at Hobe Sound National Wildlife Refuge, Florida, USA, a beach with a high density of nesting marine turtles that has a history of severe nest predation. Historically up to 95% of nests were predated, primarily by raccoons Procyon lotor and, more recently, armadillos Dasypus novemcinctus. Predator control was identified as the most important conservation tool for marine turtle reproduction. Predator management by refuge staff as ancillary duties typically only held predation levels to c. 50%. However, when experts in predator control …

Combined Optical And Acoustical Method For Determination Of Thickness And Porosity Of Transparent Organic Layers Below The Ultra-Thin Film Limit, Keith B. Rodenhausen Jr., Tadas Kasputis, Angela K. Pannier, J. Y. Gerasimov, R. Y. Lai, M. Solinsky, T. E. Tiwald, H. Wang, Amitabha Sarkar, Tino Hofmann, Natale J. Ianno, Mathias Schubert, Jennifer Y. Gerasimov

Papers in Biomolecular Engineering

Analysis techniques are needed to determine the quantity and structure of materials composing an organic layer that is below an ultra-thin film limit and in a liquid environment. Neither optical nor acoustical techniques can independently distinguish between thickness and porosity of ultra-thin films due to parameter correlation. A combined optical and acoustical approach yields sufficient information to determine both thickness and porosity. We describe application of the combinatorial approach to measure single or multiple organic layers when the total layer thickness is small compared to the wavelength of the probing light. The instrumental setup allows for simultaneous in situ spectroscopic …

Enhancing Undergraduate Education: Examining Faculty Experiences During Their First Year In A Residential College And Exploring The Implications For Student Affairs Professionals, Jody E. Jessup-Anger, Matthew R. Wawrzynski, Christina W. Yao

Department of Educational Administration: Faculty Publications

THIS QUALITATIVE STUDY EMPLOYED a constructivist, case study approach to explore how faculty made meaning of their experiences in a newly developed residential college at a large, land-grant research university in the Midwest. Findings revealed that faculty focused on determining how to prioritize the numerous opportunities for involvement while also working to define their unconventional roles as teaching-focused faculty at a research-extensive university. In reflecting on their first few months in the residential college, faculty discussed their appreciation of the collegiality of their peers. Finally, they described their role as collaborators with other faculty as they continued to lay the …

Corn Seed Spacing Uniformity As Affected By Seed Tube Condition, Michael F. Kocher, John M. Coleman, John A. Smith, Stephen D. Kachman

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Variation in corn seed spacing from a John Deere MaxEmerge^TM Plus Vacumeter planter was evaluated on the University of Nebraska Planter Test Stand in a laboratory setting for two seed tube conditions (new or worn) with two examples of corn seed shape (round or flat). Seed spacing uniformity was measured using three seed spacing uniformity parameters: Coefficient of Precision (CP3), ISO Multiples index, and ISO Miss index.

Differences were detected in all three seed spacing uniformity parameters due to the seed tube condition. The new seed tubes had better seed spacing uniformity than the worn seed tubes, within each …

Spatial Variability Of Field Machinery Use And Efficiency, Viacheslav I. Adamchuk, Robert Grisso, Michael F. Kocher

Department of Agricultural and Biological Systems Engineering: Faculty Publications

In site-specific crop management, It is a common practice to log the geographic coordinates of agricultural machinery measured using a global satellite navigation system (GNSS) such as the global positioning system (GPS). Yield, fertilizer application, and seed placement maps provide useful data for making agronomic decisions. However, the travel path itself reveals valuable information about machinery performance. Often, during field operations, odd field shapes, obstacles, or contour farming will require operators to increase the complexity of the machinery maneuvering. This usually reduces field efficiency. This chapter presents a methodology to parameterize the spatially variable characteristics of traffic patterns, and to …

Completely Biodegradable Soyprotein–Jute Biocomposites Developed Using Water Without Any Chemicals As Plasticizer, Narendra Reddy, Yiqi Yang

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Soyprotein–jute fiber composites developed using water without any chemicals as the plasticizer show much better flexural and tensile properties than polypropylene–jute composites. Co-products of soybean processing such as soy oil, soyprotein concentrate and soy protein isolates are inexpensive, abundantly available and are renewable resources that have been extensively studied as potential matrix materials to develop biodegradable composites. However, previous attempts on developing soy-based composites have either chemically modified the co-products or used plasticizers such as glycerol. Chemical modifications make the composites expensive and less environmentally friendly and plasticizers decrease the properties of the composites. In this research, soyprotein composites reinforced …

Verifying Power Claims Of High‐Power Agricultural Tractors Without A Pto To Sell In Nebraska, Michael F. Kocher, Viacheslav Adamchuk, John A. Smith, Roger M. Hoy

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Nebraska law requires the Nebraska Tractor Test Board of Engineers to compare results of the tests of an agricultural tractor model with the manufacturer's claims regarding power, fuel use, and other performance ratings in order to recommend a permit to sell that tractor model in the state. PTO tests are conducted to verify the manufacturer's PTO power and fuel claims for tractor models. In recent years, several tractor manufacturers have been producing models of large tractors either without a PTO or with a PTO not capable of transmitting the full engine power and, therefore, have chosen to advertise engine power. …

Evaluation Of Soil Salinity Leaching Requirement Guidelines, John Letey, Glenn J. Hoffman, Jan W. Hopmans, Stephen R. Grattan, Donald Louis Suarez, Dennis L. Corwin, Jim D. Oster, Laosheng Wu, Christopher Amrhein

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Water for irrigation is a major limitation to agricultural production in many parts of the world. Use of waters with elevated levels of salinity is one likely option to meet the supply of increased demands. The sources of these waters include drainage water generated by irrigated agriculture, municipal wastewater, and poor quality groundwater. Soil salinity leaching requirements that were established several decades ago were based on steady-state conditions. Recently transient-state models have been developed that potentially can more correctly predict the dynamics of the chemical–physical–biological interactions in an agricultural system. The University of California Center for Water Resources appointed a …

Flow And Transport Experiments For A Streambank Seep Originating From A Preferential Flow Pathway, Garey A. Fox, Derek M. Heeren, Ronald B. Miller, Aaron R. Mittelstet, Daniel E. Storm

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Streambank seeps commonly originate from localized heterogeneity or preferential flow pathways (PFPs) in riparian floodplains. However, limited field data have been reported on ground water seep flows and solute transport to seeps from PFPs. The objective of this research was to build upon previous floodplain-scale investigations of PFPs by analyzing seep discharge and transport characteristics through a single PFP. An important research question was whether this PFP could be conceptualized as a homogeneous, one-dimensional flow path. Streambank seep discharge measurements were obtained by inducing a hydraulic head in a trench injection system. Also, co-injection of Rhodamine WT (RhWT) and a …

In Vivo Magnetic Resonance Elastography Of Mesenchymally Derived Constructs, Shadi F. Othman, Evan T. Curtis, Huihui Xu

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The multidisciplinary field of tissue engineering (TE) aims to create biological substitutes to restore, maintain, or enhance the function of tissue or whole organs, in which the mechanical properties of replacements are critical to their structure and function. Several techniques have been investigated for measuring the mechanical properties of developing tissues and organs; however, current methods are destructive. The goal of this work is to apply high resolution Magnetic Resonance Elastography (μMRE) technique with 100 μm in-plane resolution to address a critical problem in TE: nondestructive monitoring and characterization of growing mesenchymal stem cells (MSCs)-based tissue engineered constructs. In this …