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2011

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Missouri River Recovery Program: Adaptive Management Process Framework, Joe Bonneau, Tim Fleeger, Craig Flemming, Carol Hale, Mike Anderson, Kate Buenau, Tim L. Hiller, Doug Latka, Ron Thom, Drew Tyre, Steve Fischer, Casey Kruse, Brad Thompson Jan 2011

Missouri River Recovery Program: Adaptive Management Process Framework, Joe Bonneau, Tim Fleeger, Craig Flemming, Carol Hale, Mike Anderson, Kate Buenau, Tim L. Hiller, Doug Latka, Ron Thom, Drew Tyre, Steve Fischer, Casey Kruse, Brad Thompson

United States Army Corps of Engineers, Omaha District

The purpose of this Adaptive Management (AM) Process Framework is to describe the AM process for the U.S. Army Corps of Engineers (USACE) Missouri River Recovery Program (MRRP) and explain how AM principles will be used in the MRRP to reduce uncertainty and ensure that Program objectives are achieved over time. The AM Process Framework is intended to be broad so that it can be applied to all aspects of the MRRP and be understood by a diverse audience of managers, federal and state agencies, scientists, engineers, the Missouri River Recovery Implementation Committee (MRRIC), stakeholders, Tribes, and the public.


Research And Development In The U.S. Army Corps Of Engineers: Improving The Common Stock Of Knowledge, Damon Manders Jan 2011

Research And Development In The U.S. Army Corps Of Engineers: Improving The Common Stock Of Knowledge, Damon Manders

United States Army Corps of Engineers, Omaha District

When Charles A. Camillo, the U.S. Army Corps of Engineers Mississippi Valley Division and U.S. Army Engineer Research and Development Center (ERDC) historian, approached me in 2007 about the possibility of working on a history of ERDC, I was excited about the potential of the project. He outlined a volume that would cover scientific research in engineering, hydraulics, computer science, topography, environmental science, and other technical fields. As one raised by an engineer in a town with one of the highest concentrations of physicists, engineers, and computer developers in the country — Huntsville, Alabama — and as someone who had …


Short-Term Facilitation May Stabilize Parametric Working Memory Trace, Vladimir Itskov, David Hansel, Misha Tsodyks Jan 2011

Short-Term Facilitation May Stabilize Parametric Working Memory Trace, Vladimir Itskov, David Hansel, Misha Tsodyks

Department of Mathematics: Faculty Publications

Networks with continuous set of attractors are considered to be a paradigmatic model for parametric working memory (WM), but require fine tuning of connections and are thus structurally unstable. Here we analyzed the network with ring attractor, where connections are not perfectly tuned and the activity state therefore drifts in the absence of the stabilizing stimulus. We derive an analytical expression for the drift dynamics and conclude that the network cannot function as WM for a period of several seconds, a typical delay time in monkey memory experiments. We propose that short-term synaptic facilitation in recurrent connections significantly improves the …


Assessment Of Shape Memory Alloy Stent Deployment In A Stenosed Artery, Shijia Zhao, Linxia Gu, Stacey R. Froemming Jan 2011

Assessment Of Shape Memory Alloy Stent Deployment In A Stenosed Artery, Shijia Zhao, Linxia Gu, Stacey R. Froemming

Department of Mechanical and Materials Engineering: Faculty Publications

Purpose — Shape memory alloy (SMA) stents have been used increasingly for the treatment of complex arterial occlusions. There is an immediate need to quantify the mechanical performance of SMA stents to open occluded arteries.
Methods — The stent crimping and expanding process was assessed through both numerical modeling and in-vitro studies. The implantation of a SMA stent in curved arteries with eccentric stenosis were simulated to evaluate the effect of artery curvature on arterial mechanics.
Results — The crimping process stored a considerable amount of strain energy in the stent, which were then released through self-expansion until a balance …


Comparative Analysis Of The Biaxial Mechanical Behavior Of Carotid Wall Tissue And Biological And Synthetic Materials Used For Carotid Patch Angioplasty, Alexey Kamenskiy, Iraklis I. Pipinos, Jason N. Mactaggart, Syed A. Jaffar Kazmi, Yuris A. Dzenis Jan 2011

Comparative Analysis Of The Biaxial Mechanical Behavior Of Carotid Wall Tissue And Biological And Synthetic Materials Used For Carotid Patch Angioplasty, Alexey Kamenskiy, Iraklis I. Pipinos, Jason N. Mactaggart, Syed A. Jaffar Kazmi, Yuris A. Dzenis

Department of Mechanical and Materials Engineering: Faculty Publications

Patch angioplasty is the most common technique used for the performance of carotid endarterectomy. A large number of patching materials are available for use while new materials are being continuously developed. Surprisingly little is known about the mechanical properties of these materials and how these properties compare with those of the carotid artery wall. Mismatch of the mechanical properties can produce mechanical and hemodynamic effects that may compromise the long-term patency of the endarterectomized arterial segment. The aim of this paper was to systematically evaluate and compare the biaxial mechanical behavior of the most commonly used patching materials. We compared …


Frequency Shifts In Plate Crystal Resonators Induced By Electric, Magnetic, Or Mechanical Fields In Surface Films, Nan Liu, J.S. Yang, Yuantai Hu, Xuedong Chen, Wei Jiang Jan 2011

Frequency Shifts In Plate Crystal Resonators Induced By Electric, Magnetic, Or Mechanical Fields In Surface Films, Nan Liu, J.S. Yang, Yuantai Hu, Xuedong Chen, Wei Jiang

Department of Mechanical and Materials Engineering: Faculty Publications

We study frequency shifts in plate crystal resonators with surface films. The films are multiphysical, including the effects of inertia, stiffness, intrinsic stress, piezoelectric coupling, and piezomagnetic coupling. Mindlin’s two-dimensional equations for a crystal plate with two elastic surface films are generalized to include the multiphysical effects of the films. They are used to study thickness-shear vibrations of a rotated Y-cut quartz plate with initial fields resulting from the mechanical, electric, and magnetic fields in the surface films. Frequency shifts caused by the initial fields are calculated and examined. Results show that plate crystal resonators with multiphysical surface films may …


Use Of Environmental Scanning Electron Microscopy For In Situ Observation Of Interaction Of Cells With Micro- And Nanoprobes, Alexander Goponenko, B. J. Boyle, K. I. Jahan, Maxim V. Gerashchenko, Dmitri E. Fomenko, Vadim N. Gladyshev, Yuris A. Dzenis Jan 2011

Use Of Environmental Scanning Electron Microscopy For In Situ Observation Of Interaction Of Cells With Micro- And Nanoprobes, Alexander Goponenko, B. J. Boyle, K. I. Jahan, Maxim V. Gerashchenko, Dmitri E. Fomenko, Vadim N. Gladyshev, Yuris A. Dzenis

Department of Mechanical and Materials Engineering: Faculty Publications

Precision intracellular sensing, probing and manipulation offer unprecedented opportunities for advances in biological sciences. Next-generation ultra-fine probes will be capable of targeting individual cell organelles. Development of such probes as well as probes capable of penetrating through tough cell walls requires detailed knowledge of cell-probe interaction. This Letter evaluated the applicability of environmental scanning electron microscopy (ESEM) for cell and cell-probe interaction imaging. Several types of cells (plant and yeast cells as well as mouse spermatozoa) were successfully imaged in their natural state, with mouse spermatozoa observed by ESEM for the first time. Computerized stage applied to image was tough …


Control Of Glucosylceramide Production And Morphogenesis By The Bar1 Ceramide Synthase In Fusarium Graminearum, William B. Rittenour, Ming Chen, Edgar B. Cahoon, Steven D. Harris Jan 2011

Control Of Glucosylceramide Production And Morphogenesis By The Bar1 Ceramide Synthase In Fusarium Graminearum, William B. Rittenour, Ming Chen, Edgar B. Cahoon, Steven D. Harris

Department of Plant Pathology: Faculty Publications

The contribution of plasma membrane proteins to the virulence of plant pathogenic fungi is poorly understood. Accordingly, the objective of this study was to characterize the acyl-CoA dependent ceramide synthase Bar1 (previously implicated in plasma membrane organization) in the wheat pathogen Fusarium graminearum. The role of Bar1 in mediating cell membrane organization was confirmed as DBAR1 mutants failed to display a distinct sterol-rich domain at the hyphal tip. The DBAR1 mutants were non-pathogenic when inoculated onto wheat heads, and their in vitro growth also was severely perturbed. DBAR1 mutants were incapable of producing perithecia (sexual fruiting structures) and only produced …


The Sugar Sensor, Trehalose-6-Phosphate Synthase (Tps1), Regulates Primary And Secondary Metabolism During Infection By The Rice Blast Fungus: Will Magnaporthe Oryzae’S “Sweet Tooth” Become Its “Achilles’ Heel”?, Jesse Fernandez, Richard Wilson Jan 2011

The Sugar Sensor, Trehalose-6-Phosphate Synthase (Tps1), Regulates Primary And Secondary Metabolism During Infection By The Rice Blast Fungus: Will Magnaporthe Oryzae’S “Sweet Tooth” Become Its “Achilles’ Heel”?, Jesse Fernandez, Richard Wilson

Department of Plant Pathology: Faculty Publications

Rice blast disease is considered one of the most serious diseases of cultivated rice and is mediated by the causal agent, Magnaporthe oryzae. During infection, dome-shaped fungal cells, called appressoria, form on the surface of the leaf and generate turgor through the accumulation of glycerol. This enormous pressure is directed down onto a thin penetration hypha emerging from the base of the cell, forcing it through the surface of the rice leaf and allowing fungal colonization of the plant interior. The non-reducing disaccharide, trehalose, is present in conidia of M. oryzae and is mobilized during appressorium formation. The first …


Mechanisms For Decisions About The Future, Jeffrey R. Stevens Jan 2011

Mechanisms For Decisions About The Future, Jeffrey R. Stevens

Jeffrey Stevens Publications

Evolutionary and psychological perspectives on decision making remain largely separate endeavors. The bounded rationality approach integrates these two perspectives by focusing on simple, plausible mechanisms of decision making and the cognitive capacities needed to implement these mechanisms. Decisions about the future provide a class of decisions that lend themselves to a bounded rationality approach. Though many different mechanisms may exist for making decisions about the future, only a subset of these mechanisms actually require a representation of the future. The bounded rationality approach helps focus on the cognitive capacities and decision mechanisms that are necessary for a full understanding of …


Some Laelapine Mites (Acari: Laelapidae) Ectoparasitic On Small Mammals In The Galapagos Islands, Including A New Species Of Gigantolaelaps From Aegialomys Galapagoensis, Donald D. Gettinger, Fernanda Martins-Hatano, Scott Lyell Gardner Jan 2011

Some Laelapine Mites (Acari: Laelapidae) Ectoparasitic On Small Mammals In The Galapagos Islands, Including A New Species Of Gigantolaelaps From Aegialomys Galapagoensis, Donald D. Gettinger, Fernanda Martins-Hatano, Scott Lyell Gardner

Scott L. Gardner Publications

A collection of laelapine mites from small mammals in the Galapagos Islands are identified and their host distributions reviewed. Two species of native rodents, Aegialomys galapagoensis and Nesoryzomys narboroughii, were infested only with species typical of Neotropical oryzomyine rodents; Rattus rattus was infested with Laelaps nuttalli, a host-specific ectoparasite to Old World Rattus. A synopsis of Gigantolaelaps Fonseca is provided and we describe a new laelapine mite, Gigantolaelaps aegialomys n. sp., from the pelage of the rodent A. galapagoensis on Santa Fe Island. The new species has strong morphological affinities with a subgroup of Gigantolaelaps associated …


Mechanisms Of Contact-Mediated Killing Of Yeast Cells On Dry Metallic Copper Surfaces, Davide Quaranta, Travis Krans, Christophe Espirito Santo, Christian Elowsky, Dylan W. Domaille, Christopher J. Chang, Gregor Grass Jan 2011

Mechanisms Of Contact-Mediated Killing Of Yeast Cells On Dry Metallic Copper Surfaces, Davide Quaranta, Travis Krans, Christophe Espirito Santo, Christian Elowsky, Dylan W. Domaille, Christopher J. Chang, Gregor Grass

Department of Plant Pathology: Faculty Publications

Surfaces made of copper or its alloys have strong antimicrobial properties against a wide variety of microorganisms. However, the molecular mode of action responsible for the antimicrobial efficacy of metallic copper is not known. Here, we show that dry copper surfaces inactivate Candida albicans and Saccharomyces cerevisiae within minutes in a process called contact-mediated killing. Cellular copper ion homeostasis systems influenced the kinetics of contact-mediated killing in both organisms. Deregulated copper ion uptake through a hyperactive S. cerevisiae Ctr1p (ScCtr1p) copper uptake transporter in Saccharomyces resulted in faster inactivation of mutant cells than of wild-type cells. Similarly, lack of the …


Carbenoxolone Blocks The Light-Evoked Rise In Intracellular Calcium In Isolated Melanopsin Ganglion Cell Photoreceptors, Jayne R. Bramley, Erin M. Wiles, Patricia J. Sollars, Gary E. Pickard Jan 2011

Carbenoxolone Blocks The Light-Evoked Rise In Intracellular Calcium In Isolated Melanopsin Ganglion Cell Photoreceptors, Jayne R. Bramley, Erin M. Wiles, Patricia J. Sollars, Gary E. Pickard

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: Retinal ganglion cells expressing the photopigment melanopsin are intrinsically photosensitive (ipRGCs). These ganglion cell photoreceptors send axons to several central targets involved in a variety of functions. Within the retina ipRGCs provide excitatory drive to dopaminergic amacrine cells via glutamatergic signals and ipRGCs are coupled to widefield GABAergic amacrine cells via gap junctions. However, the extent to which ipRGCs are coupled to other retinal neurons in the ganglion cell layer via gap junctions is unclear. Carbenoxolone, a widely employed gap junction inhibitor, greatly reduces the number of retinal neurons exhibiting non-rod, non-cone mediated light-evoked Ca2+ signals suggesting extensive …


Y-Like Retinal Ganglion Cells Innervate The Dorsal Raphe Nucleus In The Mongolian Gerbil (Meriones Unguiculatus), Liju Luan, Chaoran Ren, Benson Wui-Man Lau, Jian Yang, Gary E. Pickard, Kwok-Fai So, Mingliang Pu Jan 2011

Y-Like Retinal Ganglion Cells Innervate The Dorsal Raphe Nucleus In The Mongolian Gerbil (Meriones Unguiculatus), Liju Luan, Chaoran Ren, Benson Wui-Man Lau, Jian Yang, Gary E. Pickard, Kwok-Fai So, Mingliang Pu

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: The dorsal raphe nucleus (DRN) of the mesencephalon is a complex multi-functional and multi-transmitter nucleus involved in a wide range of behavioral and physiological processes. The DRN receives a direct input from the retina. However little is known regarding the type of retinal ganglion cell (RGC) that innervates the DRN. We examined morphological characteristics and physiological properties of these DRN projecting ganglion cells.

Methodology/Principal Findings: The Mongolian gerbils are highly visual rodents with a diurnal/crepuscular activity rhythm. It has been widely used as experimental animals of various studies including seasonal affective disorders and depression. Young adult gerbils were used …


Regulation Of The Latency–Reactivation Cycle By Products Encoded By The Bovine Herpesvirus 1 (Bhv-1) Latency-Related Gene, Clinton Jones, Leticia Frizzo Da Silva, Devis Sinani Jan 2011

Regulation Of The Latency–Reactivation Cycle By Products Encoded By The Bovine Herpesvirus 1 (Bhv-1) Latency-Related Gene, Clinton Jones, Leticia Frizzo Da Silva, Devis Sinani

School of Veterinary and Biomedical Sciences: Faculty Publications

Like other α-herpesvirinae subfamily members, the primary site for bovine herpesvirus 1 (BHV-1) latency is ganglionic sensory neurons. Periodically BHV-1 reactivates from latency, virus is shed, and consequently virus transmission occurs. Transcription from the latency-related (LR) gene is readily detected in neurons of trigeminal ganglia (TG) of calves or rabbits latently infected with BHV-1. Two micro-RNAs and a transcript encompassing a small open reading frame (ORF-E) located within the LR promoter can also be detected in TG of latently infected calves. A BHV-1 mutant that contains stop codons near the beginning of the first open reading frame (ORF2) within the …


Challenges And Opportunities For Toxicology In Mexico, Rodrigo Franco, Balam Muñoz Jan 2011

Challenges And Opportunities For Toxicology In Mexico, Rodrigo Franco, Balam Muñoz

School of Veterinary and Biomedical Sciences: Faculty Publications

We have developed this Special Issue titled “Challenges and Opportunities for Toxicology in Mexico” with the aim to highlight not only the challenges toxicology research faces in Mexico, but also the efforts and drive towards cutting edge research to address them. Altogether, this special issue should be a valuable source of information for all readers with an interest in toxicology and human health.

Mexico is an important economy worldwide and is a major exporter of several supplies and commodities. Because of this, its industry is a source of occupational exposure to several chemical derivatives (Nieusma 2011). The situation of occupational …


Intrinsically Photosensitive Retinal Ganglion Cells, Gary E. Pickard, Patricia J. Sollars Jan 2011

Intrinsically Photosensitive Retinal Ganglion Cells, Gary E. Pickard, Patricia J. Sollars

School of Veterinary and Biomedical Sciences: Faculty Publications

Intrinsically photosensitive retinal ganglion cells (ipRGCs) respond to light in the absence of all rod and cone photoreceptor input. The existence of these ganglion cell photoreceptors, although predicted from observations scattered over many decades, was not established until it was shown that a novel photopigment, melanopsin, was expressed in retinal ganglion cells of rodents and primates. Phototransduction in mammalian ipRGCs more closely resembles that of invertebrate than vertebrate photoreceptors and appears to be mediated by transient receptor potential channels. In the retina, ipRGCs provide excitatory drive to dopaminergic amacrine cells and ipRGCs are coupled to GABAergic amacrine cells via gap …


Long-Term Clinicopathological Characteristics Of Alpacas Naturally Infected With Bovine Viral Diarrhea Virus Type Ib, D. Bedenice, Edward J. Dubovi, Clayton Kelling, Jamie N Henningson, Christina L. Topliff, N. Parry Jan 2011

Long-Term Clinicopathological Characteristics Of Alpacas Naturally Infected With Bovine Viral Diarrhea Virus Type Ib, D. Bedenice, Edward J. Dubovi, Clayton Kelling, Jamie N Henningson, Christina L. Topliff, N. Parry

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: Substantial bovine viral diarrhea virus (BVDV)-related production losses in North American alpaca herds have been associated with BVDV type Ib infection.

Objectives: To classify and differentiate the long-term clinicopathological characteristics of BVDV type Ib infection of al- paca crias, after natural virus exposure. We hypothesized that persistently infected (PI) alpacas specifically demonstrate growth retardation, clinicopathological evidence of opportunistic infections, and early mortality.

Animals: Thirty-five crias naturally exposed to BVDV (18 acute, 3 chronic, 14 PIs), and 19 healthy cohort controls of 5 northeastern alpaca farms were prospectively evaluated over 2 years (September 2005–September 2008).

Methods: Observational cohort-control study.

Results: …


Detection Of Autoreactive Cd4 T Cells Using Major Histocompatibility Complex Class Ii Dextramers, Chandirasegaran Massilimany, Bijaya Upadhyaya, Arunakumar Gangaplara, Charles Kuszynski, Jay Reddy Jan 2011

Detection Of Autoreactive Cd4 T Cells Using Major Histocompatibility Complex Class Ii Dextramers, Chandirasegaran Massilimany, Bijaya Upadhyaya, Arunakumar Gangaplara, Charles Kuszynski, Jay Reddy

Jay Reddy Publications

Background: Tetramers are useful tools to enumerate the frequencies of antigen-specific T cells. However, unlike CD8 T cells, CD4 T cells - especially self-reactive cells - are challenging to detect with major histocompatibility complex (MHC) class II tetramers because of low frequencies and low affinities of their T cell receptors to MHCpeptide complexes. Here, we report the use of fluorescent multimers, designated MHC dextramers that contain a large number of peptide-MHC complexes per reagent.

Results: The utility of MHC dextramers was evaluated in three autoimmune disease models: 1) proteolipid protein (PLP) 139-151-induced experimental autoimmune encephalomyelitis in SJL/J (H-2s) …


Identification Of A Second Mimicry Epitope From Acanthamoeba Castellanii That Induces Cns Autoimmunity By Generating Cross-Reactive T Cells For Mbp 89–101 In Sjl Mice, Chandirasegaran Massilamany, Oluwatoyin A. Asojo, Arunakumar Gangaplara, David J. Steffen, Jay Reddy Jan 2011

Identification Of A Second Mimicry Epitope From Acanthamoeba Castellanii That Induces Cns Autoimmunity By Generating Cross-Reactive T Cells For Mbp 89–101 In Sjl Mice, Chandirasegaran Massilamany, Oluwatoyin A. Asojo, Arunakumar Gangaplara, David J. Steffen, Jay Reddy

Jay Reddy Publications

We had previously reported that Acanthamoeba castellanii (ACA) contains a mimicry epitope for proteolipid protein 139–151 capable of inducing central nervous system (CNS) autoimmunity in SJL/J mice. We now present evidence that ACA also contains a mimicry epitope for myelin basic protein (MBP) 89–101, a derivative from amoebic nicotinamide adenine dinucleotide dehydrogenase subunit 2 (NAD). The epitope, NAD 108–120, contains a discontinuous stretch of six amino acids in the core region (VVFFKNIILIGFL) sharing 46% identity with MBP 89–101 (VHFFKNIVTPRTP; identical residues are underlined). SJL mice immunized with NAD 108–120 develop encephalomyelitis similar to the disease induced by the cognate peptide. …


Identification Of A Second Mimicry Epitope From Acanthamoeba Castellanii That Induces Cns Autoimmunity By Generating Cross-Reactive T Cells For Mbp 89–101 In Sjl Mice, Chandirasegaran Massilamany, Oluwatoyin A. Asojo, Arunakumar Gangaplara, David J. Steffen, Jay Reddy Jan 2011

Identification Of A Second Mimicry Epitope From Acanthamoeba Castellanii That Induces Cns Autoimmunity By Generating Cross-Reactive T Cells For Mbp 89–101 In Sjl Mice, Chandirasegaran Massilamany, Oluwatoyin A. Asojo, Arunakumar Gangaplara, David J. Steffen, Jay Reddy

Jay Reddy Publications

We had previously reported that Acanthamoeba castellanii (ACA) contains a mimicry epitope for proteolipid protein 139–151 capable of inducing central nervous system (CNS) autoimmunity in SJL/J mice. We now present evidence that ACA also contains a mimicry epitope for myelin basic protein (MBP) 89–101, a derivative from amoebic nicotinamide adenine dinucleotide dehydrogenase subunit 2 (NAD). The epitope, NAD 108–120, contains a discontinuous stretch of six amino acids in the core region (VVFFKNIILIGFL) sharing 46% identity with MBP 89–101 (VHFFKNIVTPRTP; identical residues are underlined). SJL mice immunized with NAD 108–120 develop encephalomyelitis similar to the disease induced by the cognate peptide. …


Gender Differences In Cns Autoimmunity Induced By Mimicry Epitope For Plp 139–151 In Sjl Mice, Chandirasegara Massilamany, Sivasubramani Thulasingam, David Steffen, Jay Reddy Jan 2011

Gender Differences In Cns Autoimmunity Induced By Mimicry Epitope For Plp 139–151 In Sjl Mice, Chandirasegara Massilamany, Sivasubramani Thulasingam, David Steffen, Jay Reddy

Jay Reddy Publications

Development of multiple sclerosis (MS) is more prevalent in females than in males, but the underlying mechanisms are not clear. Microbial infections have been suspected as triggers of MS and it is not known whether gender differences in reactivity to environmental antigens contribute to the disease pathogenesis. We demonstrated that ACA 83–95, a mimicry epitope from Acanthamoeba castellanii for proteolipid protein (PLP) 139–151, induces clinical signs of encephalomyelitis in both male and female SJL mice. Conversely ACA 83–95-induced effector cells from males fail to induce disease in female mice. Although we found no gender differences in the frequencies of antigen-specific …


Cellular Transcription Factors Induced In Trigeminal Ganglia During Dexamethasone-Induced Reactivation From Latency Stimulate Bovine Herpesvirus 1 Productive Infection And Certain Viral Promoters, Aspen M. Workman, James D. Eudy, Lynette Smith, Devis Sinani, Halie Bricker, Emily Cook, Alan R. Doster, Clinton J. Jones Jan 2011

Cellular Transcription Factors Induced In Trigeminal Ganglia During Dexamethasone-Induced Reactivation From Latency Stimulate Bovine Herpesvirus 1 Productive Infection And Certain Viral Promoters, Aspen M. Workman, James D. Eudy, Lynette Smith, Devis Sinani, Halie Bricker, Emily Cook, Alan R. Doster, Clinton J. Jones

School of Veterinary and Biomedical Sciences: Faculty Publications

Bovine herpesvirus 1 (BHV-1), an alphaherpesvirinae subfamily member, establishes latency in sensory neurons. Elevated corticosteroid levels, due to stress, reproducibly triggers reactivation from latency in the field. A single intravenous injection of the synthetic corticosteroid dexamethasone (DEX) to latently infected calves consistently induces reactivation from latency. Lytic cycle viral gene expression is detected in sensory neurons within 6 h after DEX treatment of latently infected calves. These observations suggested that DEX stimulated expression of cellular genes leads to lytic cycle viral gene expression and productive infection. In this study, a commercially available assay—Bovine Gene Chip—was used to compare cellular gene …


Rnai Screening Reveals Requirement For Host Cell Secretory Pathway In Infection By Diverse Families Of Negative-Strand Rna Viruses, Debasis Panda, Anshuman Das, Phat X. Dinh, Sakthivel Subramaniam, Debasis Nayak, Nicholas J. Barrows, James L. Pearson, Jesse Thompson, David L. Kelly, Istvan Ladunga, Asit K. Pattnaik Jan 2011

Rnai Screening Reveals Requirement For Host Cell Secretory Pathway In Infection By Diverse Families Of Negative-Strand Rna Viruses, Debasis Panda, Anshuman Das, Phat X. Dinh, Sakthivel Subramaniam, Debasis Nayak, Nicholas J. Barrows, James L. Pearson, Jesse Thompson, David L. Kelly, Istvan Ladunga, Asit K. Pattnaik

School of Veterinary and Biomedical Sciences: Faculty Publications

Negative-strand (NS) RNA viruses comprise many pathogens that cause serious diseases in humans and animals. Despite their clinical importance, little is known about the host factors required for their infection. Using vesicular stomatitis virus (VSV), a prototypic NS RNA virus in the family Rhabdoviridae, we conducted a human genomewide siRNA screen and identified 72 host genes required for viral infection. Many of these identified genes were also required for infection by two other NS RNA viruses, the lymphocytic choriomeningitis virus of the Arenaviridae family and human parainfluenza virus type 3 of the Paramyxoviridae family. Genes affecting different stages of …


Consensus-Based Reporting Standards For Diagnostic Test Accuracy Studies For Paratuberculosis In Ruminants, Ian A. Gardner, Søren S. Nielsen, Richard J. Wittington, Michael T. Collins, Douwe Bakker, Beth Harris, Srinand Sreevatsan, Jason E. Lombard, Raymond Sweeney, David R. Smith, Jerrie Gavalchin, Shigetoshi Eda Jan 2011

Consensus-Based Reporting Standards For Diagnostic Test Accuracy Studies For Paratuberculosis In Ruminants, Ian A. Gardner, Søren S. Nielsen, Richard J. Wittington, Michael T. Collins, Douwe Bakker, Beth Harris, Srinand Sreevatsan, Jason E. Lombard, Raymond Sweeney, David R. Smith, Jerrie Gavalchin, Shigetoshi Eda

School of Veterinary and Biomedical Sciences: Faculty Publications

The Standards for Reporting of Diagnostic Accuracy (STARD) statement was developed to encourage complete and transparent reporting of key elements of test accuracy studies in human medicine. The statement was motivated by widespread evidence of bias in test accuracy studies and the finding that incomplete or absent reporting of items in the STARD checklist was associated with overly optimistic estimates of test performance characteristics. Although STARD principles apply broadly, specific guidelines do not exist to account for unique considerations in livestock studies such as herd tests, potential use of experimental challenge studies, a more diverse group of testing purposes and …


In Memoriam Robert Katz (1917–2011), Michael P. R. Waligorski, Francis A. Cucinotta Jan 2011

In Memoriam Robert Katz (1917–2011), Michael P. R. Waligorski, Francis A. Cucinotta

Department of Physics and Astronomy: Faculty Publications

Dr. Robert (Bob) Katz, emeritus professor of physics at the University of Nebraska, author of the Katz Model, a deceptively simple but profound parametric model of the action of charged particles on physical and biological systems, died peacefully at his home at Lincoln, NE, on March 12, 2011, after a brief illness. Bob, born in New York City in 1917, and his sister Gladys, were of immigrant Russian Jewish descent. Their parents owned a delicatessen in the Bronx, not far from the Yankee Stadium, where, as Bob recalled, Babe Ruth stopped by for hot dogs, a huge man driving a …


Ultrafast Rempi In Benzene And The Monohalobenzenes Without The Focal Volume Effect, Timothy D. Scarborough, James Strohaber, David B. Foote, Collin J. Mcacy, Cornelis J. Uiterwaal Jan 2011

Ultrafast Rempi In Benzene And The Monohalobenzenes Without The Focal Volume Effect, Timothy D. Scarborough, James Strohaber, David B. Foote, Collin J. Mcacy, Cornelis J. Uiterwaal

C.J.G.J. Uiterwaal Publications

We report on the photoionization and photofragmentation of benzene (C6H6) and of the monohalobenzenes C6H5–X (X = F, Cl, Br, I) under intense-field, single-molecule conditions. We focus 50-fs, 804-nm pulses from a Ti:sapphire laser source, and record ion mass spectra as a function of intensity in the range ~1013 W/cm2 to ~1015 W/cm2. We count ions that were created in the central, most intense part of the focal area; ions from other regions are rejected. For all targets, stable parent ions (C6H5X+) are …


Metallic And Insulating Oxide Interfaces Controlled By Electronic Correlations, H. W. Jang, D. A. Felker, C. W. Bark, Y. Wang, Manish K. Niranjan, C. T. Nelson, Y. Zhang, D. Su, C. M. Folkman, S. H. Baek, S. Lee, K. Janicka, Y. Zhu, X. Q. Pan, D. D. Fong, Evgeny Y. Tsymbal, M. S. Rzchowski, Chang-Beom Eom Jan 2011

Metallic And Insulating Oxide Interfaces Controlled By Electronic Correlations, H. W. Jang, D. A. Felker, C. W. Bark, Y. Wang, Manish K. Niranjan, C. T. Nelson, Y. Zhang, D. Su, C. M. Folkman, S. H. Baek, S. Lee, K. Janicka, Y. Zhu, X. Q. Pan, D. D. Fong, Evgeny Y. Tsymbal, M. S. Rzchowski, Chang-Beom Eom

Evgeny Tsymbal Publications

The formation of two-dimensional electron gases (2DEGs) at complex oxide interfaces is directly influenced by the oxide electronic properties. We investigated how local electron correlations control the 2DEG by inserting a single atomic layer of a rare-earth oxide (RO) [(R is lanthanum (La), praseodymium (Pr), neodymium (Nd), samarium (Sm), or yttrium (Y)] into an epitaxial strontium titanate oxide (SrTiO3) matrix using pulsed-laser deposition with atomic layer control. We find that structures with La, Pr, and Nd ions result in conducting 2DEGs at the inserted layer, whereas the structures with Sm or Y ions are insulating. Our local …


Antibody Recognition Of Porcine Circovirus Type 2 Capsid Protein Epitopes After Vaccination, Infection, And Disease, Benjamin R. Trible, Maureen Kerrigan, Nicholas Crossland, Megan Potter, Kay Faaberg, Richard Hesse, Raymond R. R. Rowland Jan 2011

Antibody Recognition Of Porcine Circovirus Type 2 Capsid Protein Epitopes After Vaccination, Infection, And Disease, Benjamin R. Trible, Maureen Kerrigan, Nicholas Crossland, Megan Potter, Kay Faaberg, Richard Hesse, Raymond R. R. Rowland

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Open reading frame 2 (ORF2) of porcine circovirus type 2 (PCV2) codes for the 233-amino-acid capsid protein (CP). Baculovirus-based vaccines that express only ORF2 are protective against clinical disease following experimental challenge or natural infection. The goal of this study was to identify regions in CP preferentially recognized by sera from experimentally infected and vaccinated pigs and to compare these responses to those of pigs diagnosed with porcine circovirus-associated disease (PCVAD), including porcine multisystemic wasting syndrome (PMWS) and porcine dermatitis and nephropathy syndrome (PDNS). The approach was to react porcine sera with CP polypeptide fragments followed by finer mapping studies …


Interface Between Black-Footed Ferret Research And Operational Conservation., Dean E. Biggins, Travis M. Livieri, Stewart W. Breck Jan 2011

Interface Between Black-Footed Ferret Research And Operational Conservation., Dean E. Biggins, Travis M. Livieri, Stewart W. Breck

United States Department of Agriculture Wildlife Services: Staff Publications

Questions and problems that emerged during operational conservation of black-footed ferrets (Mustela nigripes)have been addressed by a wide variety of studies. Early results from such studies often were communicated orally during meetings of recovery groups and in written form using memoranda, unpublished reports, and theses. Typically, implementation of results preceded their publication in widely distributed journals. Many of these studies eventually were published in journals, and we briefly summarize the contents of 8 volumes and special features of journals that have been dedicated to the biology of ferrets and issues in ferret recovery. This year marks the 30th anniversary of …