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Preparation And Studies Of Ratiometric Fluorescent Chemosensors Based On The Attenuation Of Excitation Energy Transfer, Jiba Raj Acharya

LSU Doctoral Dissertations

Molecular devices possessing pi-electron conjugated scaffold demonstrate unique capabilities as fluorescent chemosensors for the trace detection of analytes in a variety of environments. Important properties of these compounds such as charge transport and exciton migration, emission intensity etc. can be simply attenuated by external stimuli or analyte binding, leading to considerable changes in observable signals. The main goal of this Ph.D. dissertation was to study the possibility to control excitation energy migration in conjugated systems. Towards this goal, we designed surface-immobilized monodispersed oligo(p-phenylene ethynylene)s (OPEs) as a general basis for thin-film ratiometric fluorescent chemosensors. The sensor molecules have been functionalized …

Pleiotropic Regulatory Function Of The Lysr Family Transcriptional Regulator Cpsy During Streptococcus Iniae Systemic Infection, Jonathan Paul Allen

Wayne State University Dissertations

The ability of a pathogen to metabolically adapt to the local environment for optimal expression of virulence determinants is a continued area of research. Orthologs of the Streptococcus iniae LysR family regulator CpsY have been shown to regulate methionine biosynthesis and uptake pathways, but appear to influence expression of several virulence genes as well. A S. iniae mutant with an in-frame deletion of cpsY is highly attenuated in a zebrafish infection model. The cpsY deletion mutant displays a methionine-independent growth defect in serum, which differs from the methionine-dependent defect observed for orthologous mutants of S. mutans and S. agalactiae. …

A Novel In Vivo Protein Refolding Technique, Yuefei Huang

Wayne State University Dissertations

Proteins perform their functions in their native folded states and misfolding of proteins may cause severe diseases, including Alzheimer's disease, Parkinson's disease, prion disease and diabetes. Understanding protein folding is important for us to engineer proteins to treat these diseases. For protein therapeutics, large quantities of properly folded and functional proteins are required. The current technology produces recombinant proteins using either eukaryotic or prokaryotic expression system, both of them have major problems that prevent production of large quantities of properly folded and functional human proteins for protein therapeutics.

Although the eukaryotic cells have comprehensive folding machinery that contains chaperones and …

A Domain Specific Language Based Approach For Developing Complex Cloud Computing Applications, Ashwin Kumar Manjunatha

Browse all Theses and Dissertations

Computing has changed. Lately, a slew of cheap, ubiquitous, connected mobile devices as well as seemingly unlimited, utility style, pay as you go computing resources has become available at the disposal of the common man. The latter commonly called Cloud Computing (or just Cloud) is democratizing computing by making large computing power accessible to people and corporations around the world easily and economically.

However, taking full advantage of this computing landscape, especially for the data intensive domains, has been hampered by many factors, the primary one being the complexity in developing applications for the variety of available platforms.

This thesis …

The Selaginella Genome Identifies Changes In Gene Content Associated With The Evolution Of Vascular Plants, J. A. Banks, T. Nishiyama, M. Hasebe, J. L. Bowman, M. Gribskov, C. Depamphilis, Paul G. Wolf

Biology Faculty Publications

Vascular plants appeared ~410 million years ago, then diverged into several lineages of which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We report here the genome sequence of the lycophyte Selaginella moellendorffii (Selaginella), the first nonseed vascular plant genome reported. By comparing gene content in evolutionarily diverse taxa, we found that the transition from a gametophyte- to a sporophyte-dominated life cycle required far fewer new genes than the transition from a nonseed vascular to a flowering plant, whereas secondary metabolic genes expanded extensively and in parallel in the lycophyte and angiosperm lineages. Selaginella differs in …

The Role Of Co-Infection In The Spread Of Hiv In Sub-Saharan Africa, Diego Fernando Cuadros

Theses and Dissertations--Biology

The cause of the high HIV prevalence in sub-Saharan Africa is incompletely understood, with heterosexual penile-vaginal transmission proposed as the main mechanism. Heterosexual HIV transmission has a very low probability; further, a single estimation of heterosexual probability of HIV transmission fails to reproduce the variation associated with important biological cofactors. In particular, studies of HIV incidence suggest that co-infection with other infectious diseases influence the HIV transmission, and therefore might substantially vary the pattern of the spread of the infection. To assess the effect of co-infection on the spread of HIV, I developed and analyzed several mathematical and statistical models …

Paleoepidemiology Of Intestinal Parasites And Lice In Pre-Columbian South America, Adauto Araujo, Karl Reinhard, Daniela Leles, Luciana Sianto, Alena M. Iñiguez, Martin Fugassa, Bernardo Arriaza, Nancy Orellana, Luis Fernando Ferreira

Karl Reinhard Publications

Some human parasites originated in prehominid ancestors in Africa. Nematode species, such as Enterobius vermicularis (pinworm), hookworms and Trichuris trichiura are shared by humans and other close phylogenetic primates (Pan and Gorilla), showing that they infected a common ancestor to this group. When humans migrated from Africa to other continents they carried these parasites wherever climate conditions allowed parasite transmission from host to host. Other parasites, however, were acquired throughout human biological and social evolutive history when new territories were occupied. Paleoparasitology data is a valuable source to recover emergence and disappearance of parasite infections through analysis of …

A Survey On Tersilochinae (Hymenoptera: Ichneumonidae) Species Of Turkey, With A Key To European Genera, Andrey Ivanovich Khalaim, Murat Yurtcan

Turkish Journal of Zoology

Thirty-five species from 7 genera of Tersilochinae (Hymenoptera: Ichneumonidae) occur in Turkey. Of these, 20 species are new records for Turkish fauna. The general distribution and data on the biology of Turkish species are provided. Keys to all European genera and subgenera are given, with a short annotation on the taxonomy, distribution and biology of each genus.

Gas Phase Laser Synthesis And Processing Of Calcium Phosphate Nanoparticles For Biomedical Applications, Parimal Vilas Bapat

All ETDs from UAB

Biochemical processes make pervasive use of calcium and phosphate ions. Calcium phosphate salts that are naturally nontoxic and bioactive have been used for several medical applications in form of coatings and micropowders. Nanoparticle-based calcium phosphates have been shown to be internalized by living cells and be effective in DNA transfection, drug delivery, and transport of fluorophores for imaging of intracellular processes. They are also expected to interact strongly with cell adhesive proteins and are therefore promising elements in approaches to mimic the complex environment of the extra cellular matrix of bone. Harnessing this biomedical potential requires the ability to control …

Synthesis, Self-Assembly And Biological Properties Of Self-Folding Cu(Ii) Coordination Polymers, Alejandro Arzola-Rubio

Open Access Theses & Dissertations

The synthesis of materials via molecular self-assembly is a powerful bottom-up approach for fabricating matter in the nano- and micro-meter scales. This methodology involves the spontaneous and reversible organization of small molecules that interact with one another to create larger structures driven by non-covalent interactions such as hydrogen bonding, hydrophobic forces and metal-ligand coordination interactions. In this thesis, the design, synthesis and characterization of a new set of molecules that spontaneously self-organize in water to form three-dimensional nanoscale toroidal structures was investigated. These supramolecular structures were designed with an intrinsic affinity to bind and condense DNA strands with the intent …

Synthesis, Biological And Photophysical Studies Of Novel Compounds For Cancer Therapy, Edith Khavwajira Amuhaya

LSU Doctoral Dissertations

Cancer remains the second most common cause of death in the United States. It is therefore imperative that a lot of effort be put into finding a cure for this dreadful disease that shows no discrimination, and virtually anybody is at risk of developing the disease. Chapter 1 introduces basic facts about cancer and the available treatments, including PDT and BNCT. Our focus will be on these two bimodal therapies, which form the basis of my research work, which involves the synthesis of potential sensitizers to be used either in PDT or BNCT or both. In Chapter 2, I discuss …

A New Hepato-Protective Flavone Glycoside From The Flowers Of Onopordum Alexandrinum Growing In Egypt, Maha Salama, Shahira Mohammed Ezzat

Pharmacy

A bioactivity-guided fractionation of the ethyl acetate fraction of the flowers of Onopordum alexandrinum L. (Asteraceae) yielded a new flavonoidal glycoside designated as acacetin-7-O-galacturonide (9), alongside with nine known flavonoids; 6-methoxy-apigenin (hispidulin) (1), acacetin (2), apigenin (3), luteolin (4), kaempferol (5), eriodictyol (6), apigenin-7-O-glucoside (7), luteolin-7-O-glucoside (8), and kaempferol-3-O-rutinoside (10). The compounds were assayed for their hepatoprotective activity against CCl4-induced hepatic cell damage in rats and free radical scavenging activity using 2,2-diphenyl-1-picrylhydrazyl (DPPH). Compounds 4, 6, 9, and 10 have not been previously reported from flowers of O. alexandrinum L., and this is the first report of acacetin-7-O-galacturonide (9) in …

Mapping And Analyzing The Florida Reef Tract In Palm Beach County In Relation To Major Storm Events In A Gis Database, Joseph G. Pitti

Electronic Theses and Dissertations 2010 - 2019

The Florida Reef Tract in Southeast Florida is made up of hard-bottom formations. The shape and size of the tract is constantly changing. One major factor contributing to these changes is the movement of sand. This is influenced by location-based, human-induced, and natural factors. These shifting sands cover or uncover reef structure. Images of the Florida Reef Tract in Palm Beach County were analyzed by the Department of Geosciences at Florida Atlantic University, using a partially automated method of mapping. There are notable changes in reef structure throughout the years 2004-2006, in which many major storm events occurred in the …

Taxonomy And Ecology Of The Western Australian Soldier Crab, Mictyris Occidentalis (Crustacea: Decapoda: Brachyura: Mictyridae), Joyleen Florence Unno

Theses: Doctorates and Masters

The taxonomy and autoecology of the Western Australian soldier crab, Mictyris occidentalis Unno, 2008 is presented including a new species description, a comprehensive ichnology, sampling methods, an extensive habitat description and a decadal population dynamics study. Such a wide ranging, holistic study has not been carried out for any mictyrid specious previously. In detail, a taxonomy component compares M. occidentalis with congeners, clearly establishing it as a separate species from M. longicarpus to which it was previously referred, and the issues affecting taxonomic classification in the Mictyris genus in general are discussed. A species identification key is provided for the …

Barriers That Iowa High School Biology Teachers Face When Teaching Evolution In The Classroom, Joshua Michael Hanna

Dissertations and Theses @ UNI

After decades of court cases, decided in favor of evolution being taught, legal decisions where the incorporation of teaching creationist ideas have been found unconstitutional, and recent strategies and attempts that would have teachers give "equal time" to creation-science ideas; there remains a disparity among Iowa's high school biology teachers when teaching evolutionary concepts in the classroom. Taking a look at what is being taught about evolution in Iowa classrooms, this study takes an in-depth look at what Iowa's biology teachers are teaching when educating their students about evolution, where emphasis is being placed and who is putting the most …

Formation And Stabilization Of Combustion-Generated Environmentally Persistent Free Radicals On Transition Metal Oxides Supported On Silica, Eric Warren Pimentel Vejerano

LSU Doctoral Dissertations

The formation of environmentally persistent free radicals in combustion system was investigated from chemisorptions of chlorine- and hydroxy-substituted benzenes on transition metal oxide surface under post-combustion conditions. This manuscript reports the formation of EPFRs on silica particles containing 5% Fe(III)2O3, Ni(II)O, and Zn(II)O. The EPFRs are formed by the chemisorption of substituted aromatic molecular adsorbates on the metal cation center followed by electron transfer from the adsorbate to the metal ion at temperatures from 150 to 400 oC. Depending on the nature of the adsorbate and the temperature, two organic EPFRs were formed: a phenoxyl-type radical, which has a lower …

A Multi-Year Comparison Of Ipci Scores For Prairie Pothole Wetlands: Implications Of Temporal And Spatial Variation, Ned H. Euliss Jr., David M. Mushet

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

In the prairie pothole region of North America, development of Indices of Biotic Integrity (IBIs) to detect anthropogenic impacts on wetlands has been hampered by naturally dynamic inter-annual climate fluctuations. Of multiple efforts to develop IBIs for prairie pothole wetlands, only one, the Index of Plant Community Integrity (IPCI), has reported success. We evaluated the IPCI and its ability to distinguish between natural and anthropogenic variation using plant community data collected from 16 wetlands over a 4-year-period. We found that under constant anthropogenic influence, IPCI metric scores and condition ratings varied annually in response to environmental variation driven primarily by …

Classifying The Hydrologic Function Of Prairie Potholes With Remote Sensing And Gis, Jennifer Rover, Chris K. Wright, Ned H. Euliss Jr., David M. Mushet, Bruce K. Wylie

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

A sequence of Landsat TM/ETM+ scenes capturing the substantial surface water variations exhibited by prairie pothole wetlands over a drought to deluge period were analyzed in an attempt to determine the general hydrologic function of individual wetlands (recharge, flowthrough, and discharge). Multipixel objects (water bodies) were clustered according to their temporal changes in water extents. We found that wetlands receiving groundwater discharge responded differently over the time period than wetlands that did not. Also, wetlands located within topographically closed discharge basins could be distinguished from discharge basins with overland outlets. Field verification data showed that discharge wetlands with closed basins …

Activator Protein 1 (Ap-1) Contributes To Epcam-Dependent Breast Cancer Invasion, Narenda V. Sankpal, John D. Mayfield, Mike W. Willman, Timothy P. Fleming, William E. Gillanders

Open Access Publications

No abstract provided.

Assessing City Preparedness For A Biological Attack, Joseph T. Moore

Walden Dissertations and Doctoral Studies

The lack of preparedness by local communities in the event of a biological attack is a predicament that will result in chaos and an increase in casualties. Assessing city preparedness is essential in the event of a biological attack. The potential for an enormous number of casualties is real; it is imperative, therefore, for local communities to be prepared in the event of a biological attack. This descriptive single case study investigated whether one city in the southeastern United States is prepared for a biological attack. System theory provided the theoretical framework for this research, with the unit of analysis …

Psychopathy: Correlates Of The Mmpi-2-Rf And Ppi-R, Katherine Achsah Lisa Hall

Dissertations and Theses @ UNI

The present study sought to examine the utility of the MMPI-2-RF (Ben-Porath & Tellegen, 2008) in assessing psychopathic personality traits. In past studies, the Restructured Clinical scales (RC4, RC9, RC7, and RC2) have been positive predictors of psychopathic characteristics. The aim of this study is to validate and build upon the previous research by re-examining the Restructured Clinical scales (RC4, RC9, RC7, and RC2) and investigate the MMPI-2-RF fear scales (Behavioral-Restricting Fears & Multiple Specific Fears), High-Order Scale (Behavioral/Externalizing Dysfunction), Externalizing Scale (Juvenile Conduct Problems and Substance Abuse) and the Personality Psychopathology Five scales (Negative-Emotionality/Neuroticism-Revised & Introversion/Low Positive Emotionality-Revised). It …

The Energy Landscape Analysis Of Cancer Mutations In Protein Kinases, Anshuman Dixit, Gennady M. Verkhivker

Mathematics, Physics, and Computer Science Faculty Articles and Research

The growing interest in quantifying the molecular basis of protein kinase activation and allosteric regulation by cancer mutations has fueled computational studies of allosteric signaling in protein kinases. In the present study, we combined computer simulations and the energy landscape analysis of protein kinases to characterize the interplay between oncogenic mutations and locally frustrated sites as important catalysts of allostetric kinase activation. While structurally rigid kinase core constitutes a minimally frustrated hub of the catalytic domain, locally frustrated residue clusters, whose interaction networks are not energetically optimized, are prone to dynamic modulation and could enable allosteric conformational transitions. The results …

Using Archaeological Fish Remains To Determine The Native Status Of Anadromous Salmonids In The Upper Klamath Basin (Oregon, Usa) Through Mtdna And Geochemical Analysis, Alexander E. Stevenson

Dissertations and Theses

Within the Upper Klamath Basin, Oregon, the native status of anadromous salmonids (Oncorhynchus spp.) has been a long standing question. Ongoing efforts to establish if these fish were native to the region prior to the construction of the Copco I Dam on the Klamath River (c.1917) have relied on sparse, contradictory and sometimes unreliable historic documentation and informant testimony. Current restoration projects with very high financial and social costs necessitate accurate and reliable data on salmonid species which once called the region home. Often, archaeolofaunal remains present a novel way to determine species present in an area prior to …