Open Access. Powered by Scholars. Published by Universities.®

Digital Commons Network™

Open Access. Powered by Scholars. Published by Universities.®

2010

Discipline
Institution
Keyword
Publication
Publication Type
File Type

Articles 32491 - 32520 of 35775

Full-Text Articles in Entire DC Network

Building The Genomic Base-Layer Of The Oral “Omic” World, Forsyth Metagenomic Support Consortium, Jacques Izard Jan 2010

Building The Genomic Base-Layer Of The Oral “Omic” World, Forsyth Metagenomic Support Consortium, Jacques Izard

Department of Food Science and Technology: Faculty Publications

With the shift of molecular technologies directed toward the understanding of greater biological complexity of the oral cavity, a knowledge gap was created by the lack of genomic data from the diverse oral microorganisms. To facilitate and enable the interpretation of metagenomic, transcriptomic, and proteomic data generated or soon to be generated from oral biofilms, we are providing reference genomic information from phylogenetically diverse oral bacterial isolates. This work, initiated by the National Institute of Dental and Craniofacial Research as an isolated effort, is now part of the Human Microbiome Project. The goal of this effort is the public release …


Infant Temperament, Maternal Personality, And Parenting Stress As Contributors To Infant Developmental Outcomes, Victoria J. Molfese, Kathleen Moritz Rudasill, Jennifer L. Beswick, Jill L. Jacobi-Vessels, Melissa C. Ferguson, Jamie M. White Jan 2010

Infant Temperament, Maternal Personality, And Parenting Stress As Contributors To Infant Developmental Outcomes, Victoria J. Molfese, Kathleen Moritz Rudasill, Jennifer L. Beswick, Jill L. Jacobi-Vessels, Melissa C. Ferguson, Jamie M. White

Department of Educational Psychology: Faculty Publications

This study examined contributions of maternal personality and infant temperament to infant vocabulary and cognitive development both directly and indirectly through parental stress. Participants were recruited at birth and included 63 infant twin pairs and their mothers. Assessments were completed at 6, 9, 12, and 18 months of age and included Dimensions of Temperament–Revised (maternal personality), Parenting Stress Index (parental stress), Infant Behavior Questionnaire–Revised (infant temperament), Bayley Scales of Infant Development II: Mental Development Index, and MacArthur-Bates Total Vocabulary. Structural equation modeling with a jackknife approach was used to analyze data separately for each twin in the pair. At 12 …


Examining The Relationship Between The Overexcitabilities And Self-Concepts Of Gifted Adolescents Via Multivariate Cluster Analysis, Anne N. Rinn, Sal Mendaglio, Kathleen Moritz Rudasill, Kand S. Mcqueen Jan 2010

Examining The Relationship Between The Overexcitabilities And Self-Concepts Of Gifted Adolescents Via Multivariate Cluster Analysis, Anne N. Rinn, Sal Mendaglio, Kathleen Moritz Rudasill, Kand S. Mcqueen

Department of Educational Psychology: Faculty Publications

The purpose of this study was to explore the relationship between gifted adolescents’ forms of overexcitabilities and selfconcepts. Clusters of adolescents were formed on the basis of their overexcitabilities, and these clusters of adolescents were then compared with regard to their self-concept scores. Gender differences were also examined. The sample consisted of 379 gifted adolescents, ranging in age from 11 to 16 years of age. Forms of overexcitabilities were measured using the Overexcitabilities Questionnaire–II, and various facets of self-concept were measured using the Self-Description Questionnaire–II. Using cluster analysis, multivariate analysis of variance, and chi-square analysis, results suggested a distinct four-cluster …


What Can Be Done About School Bullying? Linking Research To Educational Practice, Susan M. Swearer Napolitano, Dorothy L. Espelage, Tracy Vaillancourt, Shelley Hymel Jan 2010

What Can Be Done About School Bullying? Linking Research To Educational Practice, Susan M. Swearer Napolitano, Dorothy L. Espelage, Tracy Vaillancourt, Shelley Hymel

Department of Educational Psychology: Faculty Publications

In this article, the authors review research on individual, peer, and school contributions that may be critical factors for enhancing efforts to address bullying among students. Methodological challenges are delineated,with an emphasis on how bullying is defined and assessed and the subsequent implications for bullying prevention and intervention program evaluation. The impact of school-based anti-bullying programs and the challenges currently facing educators and researchers in this area are discussed. The article concludes with a proposal for a broader, ecologically based model of school bullying based on the emerging literature.


Rural Schools, Jody Lieske, Susan M. Swearer Napolitano Jan 2010

Rural Schools, Jody Lieske, Susan M. Swearer Napolitano

Department of Educational Psychology: Faculty Publications

Nearly one in three public school students in the United States attends school in a rural area. A rural area is defined as an area with a population of 25,000 people or fewer. Rural America has often been portrayed as an idealized life that involves intact families, close ties with neighbors, low crime levels, and relatively stress free in comparison to the fast paced life of those who reside in urban areas. Although many benefits of rural living hold true, many factors such as poverty, mental health problems, substance abuse, and limited access to services create a more accurate picture …


Safe Schools Policies: Necessary But Not Sufficient For Creating Positive School Environments For Lgbtq Students [Commentary], Susan M. Swearer Napolitano Jan 2010

Safe Schools Policies: Necessary But Not Sufficient For Creating Positive School Environments For Lgbtq Students [Commentary], Susan M. Swearer Napolitano

Department of Educational Psychology: Faculty Publications

In this issue of Social Policy Report, authors Russell, Kosciw, Horn, and Saewyc review the research on LGBTQ youth and illuminate a fundamental challenge facing researchers, educators, students, families, and policymakers. They write that “homophobia and LGBTQ prejudice are daily experiences” and that the challenge facing educators is to “design supportive school climates that promote the positive development of LGBTQ and all students.” There exists in this country and in many countries around the world a huge gulf between acceptance of LGBTQ individuals and creating supportive school and work environments for all individuals. The reality is that in many …


Parallels Between Tolstoy’S Life, Writing And Hindu Philosophical Thought, Radha Balasubramanian Jan 2010

Parallels Between Tolstoy’S Life, Writing And Hindu Philosophical Thought, Radha Balasubramanian

Russian Language and Literature Papers

Tolstoy was always interested in other religions and was attracted to the ancient religions of the East. He wished to relinquish worldly pleasures and seek seclusion like a true Brahman, who in his old age gives up family and material benefits to devote himself completely to go in search of inner peace and achieve salvation. Tolstoy himself sees a correspondence between his life and Hindu way of life. In my article, I show that this quest was not isolated or applied only to his life, but existed through out Tolstoy’s writing career, as many of his heroes in his novels …


Migration Of Northern Yellowstone Elk: Implications Of Spatial Structuring, P. J. White, Kelly M. Proffitt, L. David Mech, Shaney B. Evans, Julie A. Cunningham, Kenneth L. Hamlin Jan 2010

Migration Of Northern Yellowstone Elk: Implications Of Spatial Structuring, P. J. White, Kelly M. Proffitt, L. David Mech, Shaney B. Evans, Julie A. Cunningham, Kenneth L. Hamlin

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Migration can enhance survival and recruitment of mammals by increasing access to higher-quality forage or reducing predation risk, or both. We used telemetry locations collected from 140 adult female elk during 2000– 2003 and 2007–2008 to identify factors influencing the migration of northern Yellowstone elk. Elk wintered in 2 semidistinct herd segments and migrated 10–140 km to at least 12 summer areas in Yellowstone National Park (YNP) and nearby areas of Montana. Spring migrations were delayed after winters with increased snow pack, with earlier migration in years with earlier vegetation green-up. Elk wintering at lower elevations outside YNP migrated an …


Blister Rusts In China: Hosts, Pathogens, And Management, X. Y. Zhang, Q. Lu, R. A. Sniezko, R. Q. Song, G. Man Jan 2010

Blister Rusts In China: Hosts, Pathogens, And Management, X. Y. Zhang, Q. Lu, R. A. Sniezko, R. Q. Song, G. Man

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

China has 12 taxa of white pines (subgenus Strobus), including species of wide distribution valuable to plantation forestry and species of rare endemics only distantly related to other white pines. The most important forest diseases of these white pines are caused by the blister rust fungi of the genus Cronartium that alternate to telial host species of Ribes and Pedicularis. The most serious infestations have occurred in southwestern China on Pinus armandii and in northeastern China on P. koraiensis. The blister rust pathogen on P. armandii has usually been identified as Cronartium ribicola. Several lines of …


Effects Of Splat® Gm Sprayable Pheromone Formulation On Gypsy Moth Mating Success, Ksenia S. Onufrieva, Kevin W. Thorpe, Andrea D. Hickman, Patrick C. Tobin, Donna S. Leonard, E. Anderson Roberts Jan 2010

Effects Of Splat® Gm Sprayable Pheromone Formulation On Gypsy Moth Mating Success, Ksenia S. Onufrieva, Kevin W. Thorpe, Andrea D. Hickman, Patrick C. Tobin, Donna S. Leonard, E. Anderson Roberts

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Several integrated pest management programs rely on the use of mating disruption tactics to control insect pests. Some programs specifically target non-native species, such as the gypsy moth, Lymantria dispar (L.) (Lepidoptera: Lymantriidae).We evaluated SPLAT ® GM, a new sprayable formulation of the gypsy moth sex pheromone disparlure, for its ability to disrupt gypsy moth mating. The study was conducted in 2006, 2007, and 2008 in forested areas in Virginia, USA. Mating success of gypsy moth females was reduced by >99% and male moth catches in pheromone-baited traps by >90%, in plots treated with SPLAT ® GM at dosages ranging …


Short Communication: Antiretroviral Therapy Resistance Mutations Present In The Hiv Type 1 Subtype C Pol And Env Regions From Therapy-Naive Patients In Zambia, Sandra Gonzalez, Clement Gondwe, Damien C. Tully, Veenu Minhas, Danielle Shea, Chipepo Kankasa, Tendai M'Soka, Charles Wood Jan 2010

Short Communication: Antiretroviral Therapy Resistance Mutations Present In The Hiv Type 1 Subtype C Pol And Env Regions From Therapy-Naive Patients In Zambia, Sandra Gonzalez, Clement Gondwe, Damien C. Tully, Veenu Minhas, Danielle Shea, Chipepo Kankasa, Tendai M'Soka, Charles Wood

Nebraska Center for Virology: Faculty Publications

The prevalence of antiretroviral therapy (ART) resistance mutations present in HIV-1 subtype C pol and env regions of the proviral DNA was analyzed and compared from therapy-naive individuals before (Cohort A) and after (Cohort B) the availability of free ART in Zambia. Mutations present in sequences published in a previous study from Zambian ART-naive individuals infected with subtype C were analyzed using current parameters for the classification of ART drug resistance and compared with Cohorts A and B. No statistically significant differences were observed when comparing mutations present in the pol and env of these cohorts. However, an increase in …


Primary Gamma-Herpesviral Infection In Zambian Children, Veenu Minhas, Brad P. Brayfield, Kay L. Crabtree, Chipepo Kankasa, Charles D. Mitchell, Charles Wood Jan 2010

Primary Gamma-Herpesviral Infection In Zambian Children, Veenu Minhas, Brad P. Brayfield, Kay L. Crabtree, Chipepo Kankasa, Charles D. Mitchell, Charles Wood

Nebraska Center for Virology: Faculty Publications

Background: HHV-8 is closely related to Epstein-Barr virus (EBV), but the clinical presentations of these two infections in early childhood are not well understood. Also, it is not known whether infection by one virus correlates with another. Here, we compare the natural history of infection by these two viruses along with the clinical manifestations and risk factors that are associated with early childhood infection in Zambia, which is an endemic area for HHV-8.

Methods: This study was conducted in a cohort of 12 month old Zambian children (N = 677). Data on socio-economic status and a wide range …


Restricted Genetic Diversity Of Hiv-1 Subtype C Envelope Glycoprotein From Perinatally Infected Zambian Infants, Hong Zhang, Damien C. Tully, Federico G. Hoffmann, Jun He, Chipepo Kankasa, Charles Wood Jan 2010

Restricted Genetic Diversity Of Hiv-1 Subtype C Envelope Glycoprotein From Perinatally Infected Zambian Infants, Hong Zhang, Damien C. Tully, Federico G. Hoffmann, Jun He, Chipepo Kankasa, Charles Wood

Nebraska Center for Virology: Faculty Publications

Background: Mother-to-child transmission of HIV-1 remains a significant problem in the resource-constrained settings where anti-retroviral therapy is still not widely available. Understanding the earliest events during HIV-1 transmission and characterizing the newly transmitted or founder virus is central to intervention efforts. In this study, we analyzed the viral env quasispecies of six mother-infant transmission pairs (MIPs) and characterized the genetic features of envelope glycoprotein that could influence HIV-1 subtype C perinatal transmission.

Methodology and Findings: The V1-V5 region of env was amplified from 6 MIPs baseline samples and 334 DNA sequences in total were analyzed. A comparison of …


Topological Layers In The Hiv-1 Gp120 Inner Domain Regulate Gp41 Interaction And Cd4-Triggered Conformational Transitions, Andrés Finzi, Shi-Hua Xiang, Beatriz Pacheco, Dana-Farber Cancer Institute Wang, Jessica Haight, Aemro Kassa, Brenda Danek, Marie Pancera, Peter D. Kwong, Joseph Sodroski Jan 2010

Topological Layers In The Hiv-1 Gp120 Inner Domain Regulate Gp41 Interaction And Cd4-Triggered Conformational Transitions, Andrés Finzi, Shi-Hua Xiang, Beatriz Pacheco, Dana-Farber Cancer Institute Wang, Jessica Haight, Aemro Kassa, Brenda Danek, Marie Pancera, Peter D. Kwong, Joseph Sodroski

Nebraska Center for Virology: Faculty Publications

The entry of human immunodeficiency virus (HIV-1) into cells is initiated by binding of the gp120 exterior envelope glycoprotein to the receptor, CD4. How does CD4 binding trigger conformational changes in gp120 that allow the gp41 transmembrane envelope glycoprotein to mediate viral-cell membrane fusion? The transition from the unliganded to the CD4-bound state is regulated by two potentially flexible topological layers (layers 1 and 2) in the gp120 inner domain. Both layers apparently contribute to the noncovalent association of unliganded gp120 with gp41. After CD4 makes initial contact with the gp120 outer domain, layer 1-layer 2 interactions strengthen gp120-CD4 binding …


Neuroaids In Africa, Kevin Robertson, Jeff Liner, James Hakim, Jean-Louis Sankalé, Igor Grant, Scott Letendre, David Clifford, Amadou Gallo Diop, Assan Jaye, Georgette Kanmogne, Alfred Njamnshi, T. Dianne Langford, Tufa Gemechu Weyessa, Charles Wood, Mwanza Banda, Mina Hosseinipour, Ned Sacktor, Noeline Nakasuja, Paul Bangirana, Robert Paul, John Joska, Joseph Wong, Michael Boivin, Penny Holding, Betsy Kammerer, Annelies Van Rie, Prudence Ive, Avindra Nath, Kathy Lawler, Clement Adebamowo, Walter Royal Iii, Jeymohan Joseph Jan 2010

Neuroaids In Africa, Kevin Robertson, Jeff Liner, James Hakim, Jean-Louis Sankalé, Igor Grant, Scott Letendre, David Clifford, Amadou Gallo Diop, Assan Jaye, Georgette Kanmogne, Alfred Njamnshi, T. Dianne Langford, Tufa Gemechu Weyessa, Charles Wood, Mwanza Banda, Mina Hosseinipour, Ned Sacktor, Noeline Nakasuja, Paul Bangirana, Robert Paul, John Joska, Joseph Wong, Michael Boivin, Penny Holding, Betsy Kammerer, Annelies Van Rie, Prudence Ive, Avindra Nath, Kathy Lawler, Clement Adebamowo, Walter Royal Iii, Jeymohan Joseph

Nebraska Center for Virology: Faculty Publications

In July 2009, the Center for Mental Health Research on AIDS at the National Institute of Mental Health organized and supported the meeting “NeuroAIDS in Africa.” This meeting was held in Cape Town, South Africa, and was affiliated with the 5th IAS Conference on HIV Pathogenesis, Treatment and Prevention. Presentations began with an overview of the epidemiology of HIV in sub-Saharan Africa, the molecular epidemiology of HIV, HIV-associated neurocognitive disorders (HANDs), and HAND treatment. These introductory talks were followed by presentations on HAND research and clinical care in Botswana, Cameroon, Ethiopia, The Gambia, Kenya, Malawi, Nigeria, Senegal, South Africa, Uganda, …


Functional Properties Of The Hiv-1 Subtype C Envelope Glycoprotein Associated With Mother-To-Child Transmission, Hong Zhang, Marzena Rola, John T. West, Damien C. Tully, Piotr Kubis, Jun He, Chipepo Kankasa, Charles Wood Jan 2010

Functional Properties Of The Hiv-1 Subtype C Envelope Glycoprotein Associated With Mother-To-Child Transmission, Hong Zhang, Marzena Rola, John T. West, Damien C. Tully, Piotr Kubis, Jun He, Chipepo Kankasa, Charles Wood

Nebraska Center for Virology: Faculty Publications

Understanding the properties of viruses capable of establishing infection during perinatal transmission of HIV-1 is critical for designing effective means of limiting transmission. We previously demonstrated that the newly transmitted viruses (in infant) were more fit in growth, as imparted by their envelope glycoproteins, than those in their corresponding mothers. Here, we further characterized the viral envelope glycoproteins from six mother-infant transmission pairs and determined whether any specific envelope functions correlate with HIV-1 subtype C perinatal transmission. We found that most newly transmitted viruses were less susceptible to neutralization by their maternal plasma compared to contemporaneous maternal viruses. However, the …


Chronology And Evolution Of The Hiv-1 Subtype C Epidemic In Ethiopia, Damien C. Tully, Charles Wood Jan 2010

Chronology And Evolution Of The Hiv-1 Subtype C Epidemic In Ethiopia, Damien C. Tully, Charles Wood

Nebraska Center for Virology: Faculty Publications

Objective—To reconstruct the onset date and evolutionary history of the HIV-1 subtype C epidemic in Ethiopia - one of the earliest recorded subtype C epidemics in the world.

Design—HIV-1 C env sequences with a known sampling year isolated from HIV-1 positive patients from Ethiopia between 1984 and 2003.

Methods—Evolutionary parameters including origin and demographic growth patterns were estimated using a Bayesian coalescent-based approach under either strict or relaxed molecular clock models.

Results—Bayesian evolutionary analysis indicated a most recent common ancestor date of 1965 with three distinct epidemic growth phases. Regression analysis of root-to-tip distances revealed a highly similar estimate for …


Enhancement Of Autophagy During Lytic Replication By The Kaposi’S Sarcoma-Associated Herpesvirus Replication And Transcription Activator, Hui-Ju Wen, Zhilong Yang, You Zhou, Charles Wood Jan 2010

Enhancement Of Autophagy During Lytic Replication By The Kaposi’S Sarcoma-Associated Herpesvirus Replication And Transcription Activator, Hui-Ju Wen, Zhilong Yang, You Zhou, Charles Wood

Nebraska Center for Virology: Faculty Publications

Autophagy is one of two major degradation systems in eukaryotic cells. The degradation mechanism of autophagy is required to maintain the balance between the biosynthetic and catabolic processes and also contributes to defense against invading pathogens. Recent studies suggest that a number of viruses can evade or subvert the host cell autophagic pathway to enhance their own replication. Here, we investigated the effect of autophagy on the KSHV (Kaposi’s sarcoma-associated herpesvirus) life cycle. We found that the inhibition of autophagy reduces KSHV lytic reactivation from latency, and an enhancement of autophagy can be detected during KSHV lytic replication. In addition, …


Missouri River Recovery Program: Integrated Science Program General Science Questions & Key Findings Jan 2010

Missouri River Recovery Program: Integrated Science Program General Science Questions & Key Findings

United States Army Corps of Engineers, Omaha District

I.

What is the population of pallid sturgeon in the Missouri River and its tributaries? .....5
1. What are the population trends over time? ...........................5

II.

Is propagation a viable short-term solution to augment pallid sturgeon populations?
2. Can pallid sturgeon be propagated?......................................6
3. Will stocked fish survive in the river? .....................................6
4. Will stocked fish spawn in the river?........................................7
5. What is the appropriate level of stocking?................................7

III.

Do pallid sturgeon spawn in the Missouri River? ..........................7
6. Where are the locations of spawning sites? .............................7
7. What is the timing of the spawn?...........................................8
8. What are the cues …


Anoxic Treatment Wetlands For Denitrification, Harold L. Leverenz, Kristine Haunschild, Guy Hopes, George Tchobanoglous, Jeannie L. Darby Jan 2010

Anoxic Treatment Wetlands For Denitrification, Harold L. Leverenz, Kristine Haunschild, Guy Hopes, George Tchobanoglous, Jeannie L. Darby

United States Army Corps of Engineers, Omaha District

Anoxic subsurface flow (SSF) constructed wetlands were evaluated for denitrification using nitrified wastewater. The treatment wetlands utilized a readily available organic woodchip-media packing to create the anoxic conditions. After 2 years in operation, nitrate removal was found to be best described by first-order kinetics. Removal rate constants at 20°C (k20) were determined to be 1.41–1.30 d−1, with temperature coefficients (θ) of 1.10 and 1.17, for planted and unplanted experimental woodchip-media SSF wetlands, respectively. First-order removal rate constants decreased as length of operation increased; however, a longer-term study is needed to establish the steady-state …


Isolation Of The Phycodnavirus Pbcv-1 By Biological Laser Printing, Lisa A. Fitzgerald, Peter K. Wu, James Gurnon, Justin C. Biffinger, Bradley R. Ringeisen, James L. Van Etten Jan 2010

Isolation Of The Phycodnavirus Pbcv-1 By Biological Laser Printing, Lisa A. Fitzgerald, Peter K. Wu, James Gurnon, Justin C. Biffinger, Bradley R. Ringeisen, James L. Van Etten

Department of Plant Pathology: Faculty Publications

The Phycodnaviridae family of viruses is diverse genetically but similar morphologically. These viruses infect eukaryotic algal hosts from both fresh and marine waters, and are an important component of aqueous environments. They play important roles in the dynamics of algal blooms, nutrient cycling, algal community structure, and possibly gene transfer between organisms. As such, it is important to identify new viruses within the Phycodnaviridae family. Biological laser printing (BioLP) was used to isolate single virus particles from solution. BioLP prints droplets containing a single virus particle directly onto a host medium, thereby enabling viruses to be isolated from unmodified samples. …


Microarray Analysis Of Paramecium Bursaria Chlorella Virus 1 Transcription, Giane M. Yanai-Balser, Garry A. Duncan, James D. Eudy, Dong Wang, Xiao Li, Irina V. Agarkova, David Dunigan, James L. Van Etten Jan 2010

Microarray Analysis Of Paramecium Bursaria Chlorella Virus 1 Transcription, Giane M. Yanai-Balser, Garry A. Duncan, James D. Eudy, Dong Wang, Xiao Li, Irina V. Agarkova, David Dunigan, James L. Van Etten

Department of Plant Pathology: Faculty Publications

Paramecium bursaria chlorella virus 1 (PBCV-1), a member of the family Phycodnaviridae, is a large double-stranded DNA, plaque-forming virus that infects the unicellular green alga Chlorella sp. strain NC64A. The 330-kb PBCV-1 genome is predicted to encode 365 proteins and 11 tRNAs. To monitor global transcription during PBCV-1 replication, a microarray containing 50-mer probes to the PBCV-1 365 protein-encoding genes (CDSs) was constructed. Competitive hybridization experiments were conducted by using cDNAs from poly(A)- containing RNAs obtained from cells at seven time points after virus infection. The results led to the following conclusions: (i) the PBCV-1 replication cycle is temporally …


Initial Events Associated With Virus Pbcv-1 Infection Of Chlorella Nc64a, Gerhard Thiel, Anna Moroni, David Dunigan, James L. Van Etten Jan 2010

Initial Events Associated With Virus Pbcv-1 Infection Of Chlorella Nc64a, Gerhard Thiel, Anna Moroni, David Dunigan, James L. Van Etten

Department of Plant Pathology: Faculty Publications

Chlorella viruses (or chloroviruses) are very large, plaque-forming viruses. The viruses are multilayered structures containing a large double-stranded DNA genome, a lipid bilayered membrane, and an outer icosahedral capsid shell. The viruses replicate in certain isolates of the coccal green alga, Chlorella. Sequence analysis of the 330-kbp genome of Paramecium bursaria Chlorella virus 1 (PBCV-1), the prototype of the virus family Phycodnaviridae, reveals <365 protein-encoding genes and 11 tRNA genes. Products of about 40% of these genes resemble proteins of known function, including many that are unexpected for a virus. Among these is a virus-encoded protein, called Kcv, which forms a functional K+ channel. This chapter focuses on the initial steps in virus infection and provides a plausible role for the function of the viral K+ channel in lowering the turgor pressure of the host. This step appears to be a prerequisite for delivery of the viral genome into the host.


Isolation Of The Phycodnavirus Pbcv-1 By Biological Laser Printing, Lisa A. Fitzgerald, Peter K. Wu, James R. Gurnon, Justin C. Biffinger, Bradley R. Ringeisen, James L. Van Etten Jan 2010

Isolation Of The Phycodnavirus Pbcv-1 By Biological Laser Printing, Lisa A. Fitzgerald, Peter K. Wu, James R. Gurnon, Justin C. Biffinger, Bradley R. Ringeisen, James L. Van Etten

Department of Plant Pathology: Faculty Publications

The Phycodnaviridae family of viruses is diverse genetically but similar morphologically. These viruses infect eukaryotic algal hosts from both fresh and marine waters, and are an important component of aqueous environments. They play important roles in the dynamics of algal blooms, nutrient cycling, algal community structure, and possibly gene transfer between organisms. As such, it is important to identify new viruses within the Phycodnaviridae family. Biological laser printing (BioLP) was used to isolate single virus particles from solution. BioLP prints droplets containing a single virus particle directly onto a host medium, thereby enabling viruses to be isolated from unmodified samples. …


Induction Of Interferon And Interferon Signaling Pathways By Replication Of Defective Interfering Particle Rna In Cells Constitutively Expressing Vesicular Stomatitis Virus Replication Proteins, Debasis Panda, Phat X. Dinh, Lalit Beura, Asit K. Pattnaik Jan 2010

Induction Of Interferon And Interferon Signaling Pathways By Replication Of Defective Interfering Particle Rna In Cells Constitutively Expressing Vesicular Stomatitis Virus Replication Proteins, Debasis Panda, Phat X. Dinh, Lalit Beura, Asit K. Pattnaik

School of Veterinary and Biomedical Sciences: Faculty Publications

We show here that replication of defective interfering (DI) particle RNA in HEK293 cells stably expressing vesicular stomatitis virus (VSV) replication proteins potently activates interferon (IFN) and IFN signaling pathways through upregulation of IFN- promoter, IFN-stimulated response element (ISRE) promoter, and NF-κB promoter activities. Replication of DI particle RNA, not mere expression of the viral replication proteins, was found to be critical for induction of IFN and IFN signaling. The stable cells supporting replication of DI RNA described in this report will be useful in further examining the innate immune signaling pathways and the host cell functions in viral genome …


Towards An Understanding Of The Herpes Simplex Virus Type 1 Latency-Reactivation Cycle, Guey-Chuen Perng, Clinton Jones Jan 2010

Towards An Understanding Of The Herpes Simplex Virus Type 1 Latency-Reactivation Cycle, Guey-Chuen Perng, Clinton Jones

School of Veterinary and Biomedical Sciences: Faculty Publications

Infection by herpes simplex virus type 1 (HSV-1) can cause clinical symptoms in the peripheral and central nervous system. Recurrent ocular shedding can lead to corneal scarring and vision loss making HSV-1 a leading cause of corneal blindness due to an infectious agent. The primary site of HSV-1 latency is sensory neurons within trigeminal ganglia. Periodically, reactivation from latency occurs resulting in virus transmission and recurrent disease. During latency, the latency-associated transcript (LAT) is abundantly expressed. LAT expression is important for the latency-reactivation cycle in animal models, in part, because it inhibits apoptosis, viral gene expression, and productive infection. A …


Method For Identification Of Virulence Determinants, Raul G. Barletta, Beth Harris Jan 2010

Method For Identification Of Virulence Determinants, Raul G. Barletta, Beth Harris

School of Veterinary and Biomedical Sciences: Faculty Publications

Disclosed are methods for the determination of virulence determinants in bacteria and in particular bacteria of the genus Mycobacterium. Also disclosed are compositions and methods for stimulating an immune response in an animal using bacteria and virulence determinants identified by the methods of the present invention.


A Deletion Mutation In Bovine Slc4a2 Is Associated With Osteopetrosis In Red Angus Cattle, Stacey N. Meyers, Tara G. Mcdaneld, Shannon L. Swist, Brandy M. Marron, David J. Steffen, Donal O'Toole, Jeffrey R. O'Connell, Jonathan E. Beever, Tad S. Sonstegard, Timothy P.L. Smith Jan 2010

A Deletion Mutation In Bovine Slc4a2 Is Associated With Osteopetrosis In Red Angus Cattle, Stacey N. Meyers, Tara G. Mcdaneld, Shannon L. Swist, Brandy M. Marron, David J. Steffen, Donal O'Toole, Jeffrey R. O'Connell, Jonathan E. Beever, Tad S. Sonstegard, Timothy P.L. Smith

School of Veterinary and Biomedical Sciences: Faculty Publications

Background: Osteopetrosis is a skeletal disorder of humans and animals characterized by the formation of overly dense bones, resulting from a deficiency in the number and/or function of bone-resorbing osteoclast cells. In cattle, osteopetrosis can either be induced during gestation by viral infection of the dam, or inherited as a recessive defect. Genetically affected calves are typically aborted late in gestation, display skull deformities and exhibit a marked reduction of osteoclasts. Although mutations in several genes are associated with osteopetrosis in humans and mice, the genetic basis of the cattle disorder was previously unknown.

Results: We have conducted a whole-genome …


Fine-Scale Genetic And Social Structuring In A Central Appalachian White-Tailed Deer Herd, Brad F. Miller, Randy W. Deyoung, Tyler A. Campbell, Benjamin R. Laseter, W. Mark Ford, Karl V. Miller Jan 2010

Fine-Scale Genetic And Social Structuring In A Central Appalachian White-Tailed Deer Herd, Brad F. Miller, Randy W. Deyoung, Tyler A. Campbell, Benjamin R. Laseter, W. Mark Ford, Karl V. Miller

United States Department of Agriculture Wildlife Services: Staff Publications

Spatial genetic structure in white-tailed deer (Odocoileus virginianus) has been examined at regional scales, but genetic markers with the resolution to detect fine-scale patterns have appeared only recently. We used a panel of microsatellite DNA markers, radiotelemetry data, and visual observations of marked deer to study fine-scale social and genetic structure in a high-density population of white-tailed deer (12–20 deer/km2). We collected genetic data on 229 adult females, 102 of which were assigned to 28 social groups. Our results were consistent with the conceptual model of white-tailed deer social structure, where philopatric females form social groups …


Host-Specificity Of Myxoma Virus: Pathogenesis Of South American And North American Strains Of Myxoma Virus In Two North American Lagomorph Species, L. Silvers, D. Barnard, F. Knowlton, B. Inglis, A. Labudovic, M.K. Holland, P.A. Janssens, B.H. Van Leeuwen, P.J. Kerr Jan 2010

Host-Specificity Of Myxoma Virus: Pathogenesis Of South American And North American Strains Of Myxoma Virus In Two North American Lagomorph Species, L. Silvers, D. Barnard, F. Knowlton, B. Inglis, A. Labudovic, M.K. Holland, P.A. Janssens, B.H. Van Leeuwen, P.J. Kerr

United States Department of Agriculture Wildlife Services: Staff Publications

The pathogenesis of South American and North American myxoma viruses was examined in two species of North American lagomorphs, Sylvilagus nuttallii (mountain cottontail) and Sylvilagus audubonii (desert cottontail) both of which have been shown to have the potential to transmit the South American type of myxoma virus. Following infection with the South American strain (Lausanne, Lu), S. nuttallii developed both a local lesion and secondary lesions on the skin. They did not develop the classical myxomatosis seen in European rabbits (Oryctolagus cuniculus). The infection at the inoculation site did not resolve during the 20-day time course of the …