Digital Commons Network^™

Contribution Of Impaired Myocardial Insulin Signaling To Mitochondrial Dysfunction And Oxidative Stress In The Heart, Sihem Boudina, Heiko Bugger, Sandra Sena, Brian T. O'Neill, Vlad G. Zaha, Olesya Ilkun, Jordan J. Wright, Pradip K. Mazumber, Eric Palfreyman, Timothy J. Tidwell, Heather Theobald, Oleh Khalimonchuk, Benjamin Wayment, Xiaoming Sheng, Kenneth J. Rodnick, Ryan Centini, Dong Chen, Sheldon E. Litwin, Bart E. Weimer, E. Dale Abel

Department of Biochemistry: Faculty Publications

Background—Diabetes-associated cardiac dysfunction is associated with mitochondrial dysfunction and oxidative stress, which may contribute to LV dysfunction. The contribution of altered myocardial insulin action, independently of associated changes in systemic metabolism is incompletely understood. The present study tested the hypothesis that perinatal loss of insulin signaling in the heart impairs mitochondrial function.

Methods and Results—In 8-week-old mice with cardiomyocyte deletion of insulin receptors (CIRKO), inotropic reserves were reduced and mitochondria manifested respiratory defects for pyruvate that was associated with proportionate reductions in catalytic subunits of pyruvate dehydrogenase. Progressive age-dependent defects in oxygen consumption and ATP synthesis with the substrates glutamate …

Improved Sugar Conversion And Ethanol Yield For Forage Sorghum (Sorghum Bicolor L. Moench) Lines With Reduced Lignin Contents, Bruce S. Dien, Gautam Sarath, Jeffrey F. Pedersen, Scott E. Sattler, Han Chen, Deanna L. Funnell-Harris, Nancy N. Nichols, Michael A. Cotta

Gautam Sarath Publications

Lignin is known to impede conversion of lignocellulose into ethanol. In this study, forage sorghum plants carrying brown midrib (bmr) mutations, which reduce lignin contents, were evaluated as bioenergy feedstocks.

Two Distinct Waxy Alleles Impact The Granule-Bound Starch Synthase In Sorghum, Scott E. Sattler, Jaswinder Singh, Eric J. Haas, Lining Guo, Gautam Sarath, Jeffrey F. Pedersen

Gautam Sarath Publications

The granule-bound starch synthase (GBSS) is the enzyme responsible for amylose synthesis in starch granules. Loss of GBSS activity results in starch granules containing mostly amylopectin and little or no amylose, a phenotype described as waxy.

Computational Prediction Of Novel Non-Coding Rnas In Arabidopsis Thaliana, Dandan Song, Yang Yang, Bin Yu, Binglian Zheng, Zhidong Deng, Bao-Liang Lu, Xuemei Chen, Tao Jiang

School of Biological Sciences: Faculty Publications

Background: Non-coding RNA (ncRNA) genes do not encode proteins but produce functional RNA molecules that play crucial roles in many key biological processes. Recent genome-wide transcriptional profiling studies using tiling arrays in organisms such as human and Arabidopsis have revealed a great number of transcripts, a large portion of which have little or no capability to encode proteins. This unexpected finding suggests that the currently known repertoire of ncRNAs may only represent a small fraction of ncRNAs of the organisms. Thus, efficient and effective prediction of ncRNAs has become an important task in bioinformatics in recent years. Among the available …

Impacts Of Insect Herbivory On Cactus Population Dynamics: Experimental Demography Across An Environmental Gradient, Tom E. X. Miller, Svata M. Louda, Karen A. Rose, James O. Eckberg

School of Biological Sciences: Faculty Publications

Understanding the role of consumers in plant population dynamics is important, both conceptually and practically. Yet, while the negative effects of herbivory on plant performance have been well documented, we know much less about how individuallevel damage translates to impacts on population growth or whether spatial variation in herbivory affects patterns of plant distribution. We studied the role of insect herbivory in the dynamics and distribution of the tree cholla cactus (Opuntia imbricata), a long-lived perennial plant, across an elevational gradient in central New Mexico, USA, from low-elevation grassland (1670 m) to a grassland–mountain transition zone (1720 m) …

Sex Effects On Life Span And Senescence In The Wild When Dates Of Birth And Death Are Unknown, Felix Zajitschek, Chad Brassil, Russell Bonduriansky, Robert C. Brooks

School of Biological Sciences: Faculty Publications

Males and females allocate and schedule reproductive effort in very different ways. Because the timing and amount of reproductive effort influence survival and thus the optimization of life histories, mortality and senescence are predicted to be sex specific. However, age-specific mortality rates of wild animals are often difficult to quantify in natural populations. Studies that report mortality rates from natural populations are, therefore, almost entirely confined to long-lived, easy-to-track species such as large mammals and birds. Here, we employ a novel approach using capture–mark–recapture data from a wild population of black field crickets (Teleogryllus commodus) to test for …

Blood Sampling Reduces Annual Survival In Cliff Swallows (Petrochelidon Pyrrhonota) -- La Toma De Muestras De Sangre Reduce La Supervivencia Anual En Petrochelidon Pyrrhonota, Charles R. Brown, Mary Bomberger Brown

School of Biological Sciences: Faculty Publications

Researchers commonly collect blood samples from wild birds, and most workers assume that blood sampling has no adverse effect on the birds’ survival. Few studies, however, have done controlled comparisons among bled and non-bled individuals and estimated survival using modern statistical methodology. We used a data set on Cliff Swallows (Petrochelidon pyrrhonota) that included 2,945 bled and 7,822 non-bled birds captured at the same times and sites in southwestern Nebraska from 1986 to 2006 to estimate annual survival and recapture probabilities of each group. Blood was collected with brachial venipuncture in amounts varying from 0.3% to 1.2% of …

Evolution And Pleiotropy Of Trithorax Function In Arabidopsis, Zoya Avramova

School of Biological Sciences: Faculty Publications

The SET domain-containing genes of the TRITHORAX family encode epigenetic factors that maintain the expression of targeted genes. Trithorax homologs have been found in both animals and plants. Since these are thought to have evolved multicellularity independently, common mechanisms of epigenetic regulation must be evolutionarily ancient and derived from a common ancestor. In addition, each lineage has evolved unique mechanisms to expand the original repertoire of epigenetic functions. Phylogenetic analysis of SET domain proteins has outlined some intriguing evolutionary trends. In plants, epigenetic gene silencing mechanisms have been aggressively pursued. In contrast, studies of epigenetic mechanisms maintaining active gene expression …

Costs And Benefits Of Freezing Behavior In The Harvestman Eumesosoma Roeweri (Arachnida, Opiliones), Marie-Claire Chelini, Rodrigo H. Willemart, Eileen Hebets

Eileen Hebets Publications

Animals present an enormous variety of behavioral defensive mechanisms, which increase their survival, but often at a cost. Several animal taxa reduce their chances of being detected and/or recognized as prey items by freezing (remaining completely motionless) in the presence of a predator. We studied costs and benefits of freezing in immature Eumesosoma roeweri (Opiliones, Sclerosomatidae). Preliminary observations showed that these individuals often freeze in the presence of the syntopic predatory spider Schizocosa ocreata (Araneae, Lycosidae). We verified that harvestmen paired with predators spent more time freezing than when alone or when paired with a conspecific. Then, we determined that …

Condition-Dependent Alternative Mating Tactics In A Sexually Cannibalistic Wolf Spider, Dustin J. Wilgers, Amy C. Nicholas, David H. Reed, Gail E. Stratton, Eileen Hebets

Eileen Hebets Publications

Condition-dependent male mating tactics often involve high-quality males capitalizing on the outcome of intersexual selection, whereas low-quality males use behaviors that circumvent female choice to achieve copulation. In the wolf spider Rabidosa punctulata, males display 2 distinct mating tactics: 1) “courtship”—consisting of visual and seismic components or 2) “direct mount”—consisting of males grappling/holding females until they assume a copulatory posture. We tested for condition-dependent tactic expression using both field-collected individuals (representing natural variation in body mass and condition) and individuals whose diet we manipulated in the laboratory (representing extreme divergences in body size and condition). Across both natural and …

Caenorhabditis Elegans Genomic Response To Soil Bacteria Predicts Environment-Specific Genetic Effects On Life History Traits, Joseph D. Coolon, Kenneth L. Jones, Timothy C. Todd, Bryanua C. Carr, Michael A. Herman

School of Biological Sciences: Faculty Publications

With the post-genomic era came a dramatic increase in high-throughput technologies, of which transcriptional profiling by microarrays was one of the most popular. One application of this technology is to identify genes that are differentially expressed in response to different environmental conditions. These experiments are constructed under the assumption that the differentially expressed genes are functionally important in the environment where they are induced. However, whether differential expression is predictive of functional importance has yet to be tested. Here we have addressed this expectation by employing Caenorhabditis elegans as a model for the interaction of native soil nematode taxa and …

The Nuclear Receptor Nhr-25 Cooperates With The Wnt/Β-Catenin Asymmetry Pathway To Control Differentiation Of The T Seam Cell In C. Elegans, Martina Hajduskova, Marek Jindra, Michael A. Herman, Masako Asahina

School of Biological Sciences: Faculty Publications

Asymmetric cell divisions produce new cell types during animal development. Studies in Caenorhabditis elegans have identified major signal-transduction pathways that determine the polarity of cell divisions. How these relatively few conserved pathways interact and what modulates them to ensure the diversity of multiple tissue types is an open question. The Wnt/β-catenin asymmetry pathway governs polarity of the epidermal T seam cell in the C. elegans tail. Here, we show that the asymmetry of T-seam-cell division and morphogenesis of the male sensory rays require NHR-25, an evolutionarily conserved nuclear receptor. NHR-25 ensures the neural fate of the T-seam-cell descendants in cooperation …

2009 Admissions Brochure, New York Law School

NYLS Bulletins and Catalogs

No abstract provided.

Microbiology Of Oil Fly Larvae, Kenneth Nickerson, Bradley A. Plantz

Kenneth Nickerson Papers

One animal beautifully adapted to the viscous asphalt of the La Brea tar pits is the oil fly Helaeomyia petrolei (Syn. Psilopa). As a normal part of its carnivorous existence the oil fly larval guts are filled with tar, with no adverse effects. Surface sterilized larvae 5 contained ca. 2 x 10 heterotrophic bacteria per larva. These bacteria have been identified as a mixture of enteric bacteria, most commonly Providencia rettgeri, and Acinetobacter spp. These bacteria were clearly growing because their numbers in the larval guts were 100 to 1,000 times greater than in free oil/asphalt. There is …

Characterization Of Dictyocaulus Species (Nematoda: Trichostrongyloidea) From Three Species Of Wild Ruminants In Northwestern Spain, Ramon A. Carreno, Natividad Diez-Baños, Maria Del Rosario Hidalgo-Argüello, Steven A. Nadler

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Specimens of Dictyocaulus spp. were extracted from the respiratory tracts of 3 ruminant hosts including roe deer (Capreolus capreolus), red deer (Cervus elaphus), and chamois (Rupicapra rupicapra) from wild populations in the province of Leo´n, northwestern Spain. The near-complete nuclear small-subunit ribosomal RNA gene, and 2 regions of the large-subunit ribosomal RNA gene, were amplified by PCR and sequenced. The SSU rDNA gene sequences indicated a high level of similarity between the isolate from C. elaphus and the published sequences for Dictyocaulus eckerti. SSU rDNA gene sequences were identical in the isolates from …

Systematic Position Of Pseudocorynosoma And Andracantha (Acanthocephala, Polymorphidae) Based On Nuclear And Mitochondrial Gene Sequences, Martín García-Varela

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Species of Pseudocorynosoma are North and South American acanthocephalans that use waterfowl as definitive hosts and amphipods as intermediate hosts, whereas species of Andracantha occur in fish-eating birds with a worldwide distribution. Pseudocorynosoma and Andracantha were originally described as Corynosoma (now restricted to endoparasites of marine mammals). Morphologically, Andracantha is distinct from other genera of Polymorphidae in possessing 2 fields of spines on the trunk, whereas Corynosoma and Pseudocorynosoma have a single field. A recent phylogenetic hypothesis based on morphological characters suggested that Andracantha is closely related to Corynosoma, whereas Pseudocorynosoma was of uncertain phylogenetic position within the Polymorphidae. …

Rhabditid Nematode-Associated Ophthalmitis And Meningoencephalomyelitis In Captive Asian Horned Frogs (Megophrys Montana) [Case Reports], Denise M. Imai, Steven A. Nadler, Deena Brenner, Taryn A. Donovan, Allan P. Pessier

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Between 2006 and 2008, 4 captive Asian horned frogs (Megophrys montana) were diagnosed with ocular and neurologic disease associated with rhabditid nematodiasis. Mortality, either spontaneous or by humane euthanasia, was high (3/4, 75%). Gross and histologic findings included varying degrees of ulcerative keratitis, histiocytic uveitis and retinitis, meningoencephalomyelitis, and epidermal chromatophore (iridophore) hyperplasia with intralesional nematodes. Entry into the host was presumed to be by direct invasion of the skin and the cornea with migration through the optic nerve to the brain and spinal cord. One frog was diagnosed with rhabditid nematodiasis antemortem, and clinical signs and lesions …

Trematoda (Platyhelminthes) Of The Gulf Of Mexico, Robin M. Overstreet, Joshua O. Cook, Richard W. Heard

Harold W. Manter Laboratory of Parasitology: Faculty Publications

First paragraph:

The platyhelminth class Trematoda, consisting of the subclasses Aspidogastrea and Digenea, contains individuals referred to as digeneans, trematodes, or flukes. Aspidogastreans, not digeneans in the strict sense2 number about 80 species in total (Rohde 2005), but adults in the Gulf of Mexico of 4 species have been reported from teleost and chondrichthyan fishes (Hendrix and Overstreet I 977) and one from a turtle (Wharton 1939). Consequently, this chapter deals with trematodes rather than just digeneans, even though all the records but the 5 refer to digeneans. Trematoda is the largest group of platyhelminths, and trematode adults, other than …

Recent Occurrence Of An American Black Bear In Nebraska, Justin D. Hoffman, Sam Wilson, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

We report on a young male, cinnamon-phase American black bear (Ursus americanus) that was collected in northwestern Nebraska on May 12, 2008. This specimen represents the first black bear taken in Nebraska since 1907. Cranial characteristics and mass of the individual indicated a 15–16-month old bear. This bear may have dispersed from the Laramie Mountains in southeastern Wyoming along the North Platte River into western Nebraska. This record adds to the growing number of cases where large carnivores are reinvading previously occupied territory in the Great Plains. These reinvasions potentially have broad ecological implications to local prey populations …

Increased Susceptibility Of Spinal Muscular Atrophy Fibroblasts To Camptothecin Is P53-Independent., Chia-Yen Wu, Ilsa Gómez-Curet, Vicky L Funanage, Mena Scavina, Wenlan Wang

Department of Pediatrics Faculty Papers

BACKGROUND: Deletion or mutation(s) of the survival motor neuron 1 (SMN1) gene causes spinal muscular atrophy (SMA). The SMN protein is known to play a role in RNA metabolism, neurite outgrowth, and cell survival. Yet, it remains unclear how SMN deficiency causes selective motor neuron death and muscle atrophy seen in SMA. Previously, we have shown that skin fibroblasts from SMA patients are more sensitive to the DNA topoisomerase I inhibitor camptothecin, supporting a role for SMN in cell survival. Here, we examine the potential mechanism of camptothecin sensitivity in SMA fibroblasts.

RESULTS: Camptothecin treatment reduced the DNA relaxation activity …

The Effects Of N-Acetylcysteine On Intestinal Ischemia/Reperfusion Injury In Rats, Suleyman Ayvaz, Burhan Aksu, Mustafa Inan, Hafize Uzun, Seval Aydin, Selcuk Bilgi, Hasan C. Umit, Mehmet Pul

Saudi Medical Journal

OBJECTIVE: To evaluate the effects of N-acetylcysteine NAC on the injury of intestinal ischemia-reperfusion. METHODS: Forty-eight Wistar-Albino rats were divided into 6 groups: as control, ischemia, ischemia-reperfusion, ischemia + N-acetylcysteine, ischemia-reperfusion + N-acetylcysteine IRN, and reperfusion + N-acetylcysteine RN. Histopathologic examination was performed to all groups. In the tissue and plasma, and erythrocyte samples, malondialdehyde, superoxide dismutase, glutathione, and nitric oxide NO levels were evaluated. The present study was carried out in Trakya and Istanbul University, Edirne, Turkey between December 2002 and July 2003. RESULTS: The most severe histopathological damage was seen in the intestinal ischemia-reperfusion group, and this damage …

The Protective Effect Of Ng-Nitro-L-Arginine Methyl Ester And Insulin On Nitric Oxide Inhibition And Pathology In Experimental Diabetic Rat Liver, Hilmi Ozden, Neslihan Tekin, Fahrettin Akyuz, Firdevs Gurer, Mehmet C. Ustuner, Fulya Kucuk, Gul Guven, Faik Yaylak

Saudi Medical Journal

OBJECTIVE: To determine on protective role of NG-nitro-L-arginine methyl ester L-NAME, and insulin on the liver in streptozotocin STZ induced diabetic rats. METHODS: This study was performed in the Department of Biochemistry, Faculty of Medicine, Eskisehir Osmangazi University, Eskisehir, Turkey in 2007. Forty male Wistar albino rats were divided into 5 groups. These were untreated, diabetic control, STZ+insulin, STZ+L-NAME and STZ+insulin+L-NAME induced groups. The STZ was intraperitonally injected into 3 groups, and includes insulin, L-NAME, and their joint administrations as protective agents. The blood glucose and nitric oxide NO levels were determined. The tissue samples were obtained at the end …

Rapid Development Of Multimedia Instructional Modules For Information Technology Education, Nanda Ganesan

Journal of International Technology and Information Management

A multifaceted learning model was developed for implementing e-learning in a largely commuter campus. The primary objective of the model was to build a flexible learning environment that combined the learning effectiveness of in-class learning with the flexibility and accessibility of online learning. One of the components of the model was the multimedia instructional modules produced to teach various Information Technology courses. Several different types of modules were produced representing chalk-and-talk type of lectures, PowerPoint presentations and software tutorials. The chalk-and-talk type of lecture modules and the software tutorials that emulated the in-class learning experience contributed positively towards enhancing the …

A Practical Information Technology Program, Bijan Mashaw

Journal of International Technology and Information Management

This paper discusses the challenges facing business in the 21 st century and the dramatic changes in the use of computers and application development process. These challenges, as well as the increase of global economy, coupled with the demand for the business technology workers indicate the need for redesigning the Information System Curriculum. The proposed framework for an Information Technology (IT) Program in this paper offers a pragmatic curriculum model to accommodate the needs and challenges of the 21st century. The framework provides a fundamental IT education for the graduates of such a curriculum, as well as allowing an area …

Androgen-Stimulated Udp-Glucose Dehydrogenase Expression Limits Prostate Androgen Availability Without Impacting Hyaluronan Levels, Qin Wei, Robert Galbenus, Ashraf Raza, Ronald Cerny, Melanie A. Simpson

Ronald Cerny Publications

UDP-glucose dehydrogenase (UGDH) oxidizes UDP-glucose to UDP-glucuronate, an essential precursor for production of hyaluronan (HA), proteoglycans, and xenobiotic glucuronides. High levels of HA turnover in prostate cancer are correlated with aggressive progression. UGDH expression is high in the normal prostate even though HA accumulation is virtually undetectable. Thus, its normal role in the prostate may be to provide precursors for glucuronosyltransferase enzymes, which inactivate and solubilize androgens by glucuronidation. In this report, we quantified androgen dependence of UGDH, glucuronosyltransferase, and HA synthase expression. Androgen dependent and independent human prostate cancer cell lines were used to test the effects of UGDH …

Structural And Functional Similarity Between The Bacterial Type Iii Secretion System Needle Protein Prgi And The Eukaryotic Apoptosis Bcl-2 Proteins, Matthew D. Shortridge, Robert Powers

Department of Chemistry: Faculty Publications

Background: Functional similarity is challenging to identify when global sequence and structure similarity is low. Activesites or functionally relevant regions are evolutionarily more stable relative to the remainder of a protein structure and provide an alternative means to identify potential functional similarity between proteins. We recently developed the FASTNMR methodology to discover biochemical functions or functional hypotheses of proteins of unknown function by experimentally identifying ligand binding sites. FAST-NMR utilizes our CPASS software and database to assign a function based on a similarity in the structure and sequence of ligand binding sites between proteins of known and unknown function.

Methodology/Principal …

Bess: BIofuel ENergy SYstems SImulator: Life Cycle Energy & Emissions Analysis Model For Corn-Ethanol Biofuel Production Systems -- User’S Guide For The Bess Model, Adam Liska, Haishun Yang, Daniel T. Walters, Kenneth Cassman, Terry Klopfenstein, Galen Erickson, Virgil R. Bremer, Richard K. Koelsch, Dan Kenney, Patrick Tracy

Adam Liska Papers

The BESS model is a software tool to calculate the energy efficiency, greenhouse gas (GHG) emissions, and natural resource requirements of corn–to-ethanol biofuel production systems. The model provides a “cradle-to-grave” analysis of the production life cycle of biofuels from the creation of material inputs to finished products, producing an inventory of distributed GHG emissions from fossil fuels and a few key indirect emissions in the production life cycle. The model parameters can be set by the user to achieve the highest accuracy in evaluating a single corn-ethanol biorefinery and its surrounding feedstock crop production zone. The model equations and summary …

Ecological Genomics Of Nematode Community Interactions: Model And Non-Model Approaches, Michael A. Herman, Joseph D. Coolon, Kenneth L. Jones, Timothy Todd

School of Biological Sciences: Faculty Publications

The effects of human-induced environmental change are evident at multiple levels of biological organization. To date, most environmental change studies have focused on effects at the ecosystem, community, and organismal levels. However, the ultimate controls of biological responses are located in the genome. Thus, genetic and genomic studies of organismal responses to environmental changes are necessary. Recent advances in genome analysis now make such analyses possible. In this chapter we describe a research approach and program that can begin to span this gap by using genome-enabled approaches to characterize organismal changes and then employing a genetically tractable model organism to …

An Overview Of Systematics And Evolution Of Ticks, Santiago Nava, Alberto A. Guglielmone, Atilio J. Mangold

Harold W. Manter Laboratory of Parasitology: Library Materials

All species of ticks (Acari: Ixodida) are grouped into three families: Argasidae (186 species), Ixodidae (692 species), and Nuttalliellidae (monotypic). Molecular markers have been developed and applied for tick studies along with conventional techniques. The origin of ticks is during the pre-mid Cretaceous period (with both the Argasidae and Ixodidae being established in the middle Cretaceous). Primeval hosts were probably reptiles or amphibians. The Argasidae contains two to five subfamilies according to authors but relationships among its members are far from resolved. The Ixodidae were formed by the basal Prostriata group (genus Ixodes, subfamily Ixodinae) and the Metastriata group …

Paleoparasitology Of Chagas Disease - A Review, Adauto Araujo, Ann Maria Jansen, Karl Reinhard, Luiz F. Ferreira

Karl Reinhard Publications

One hundred years since the discovery of Chagas disease associated with Trypanosoma cruzi infection, growing attention has focused on understanding the evolution in parasite-human host interaction. This interest has featured studies and results from paleoparasitology, not only the description of lesions in mummified bodies, but also the recovery of genetic material from the parasite and the possibility of analyzing such material over time. The present study reviews the evidence of Chagas disease in organic remains excavated from archeological sites and discusses two findings in greater detail, both with lesions suggestive of chagasic megacolon and confirmed by molecular biology techniques. One …