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On The Electrostatic Component Of Protein-Protein Binding Free Energy, Kemper Talley, Carmen Ng, Michael Shoppell, Petras Kundrotas, Emil Alexov

Publications

Calculations of electrostatic properties of protein-protein complexes are usually done within framework of a model with a certain set of parameters. In this paper we present a comprehensive statistical analysis of the sensitivity of the electrostatic component of binding free energy (DeltaDeltaGel) with respect with different force fields (Charmm, Amber, and OPLS), different values of the internal dielectric constant, and different presentations of molecular surface (different values of the probe radius). The study was done using the largest so far set of entries comprising 260 hetero and 2148 homo protein-protein complexes extracted from a previously developed database of protein complexes …

Multiwavelength Analysis Of The Intriguing Grb 061126: The Reverse Shock Scenario And Magnetization, A. Gomboc, S. Kobayashi, C. Guidorzi, A. Melandri, V. Mangano, B. Sbarufatti, C. G. Mundell, P. Schady, R. J. Smith, A C. Updike, D A. Kann, K Misra, E Rol, A Pozanenko, A J. Castro-Tirado, G C. Anupama, D Bersier, M F. Bode, D Carter, P Curran, A Fruchter, J Graham, Dieter H. Hartmann, M Ibrahimov, A Levan, A Monfardini, C J. Mottram, P T. O'Brien, P Prema, D K. Sahu, I A. Steele, N R. Tanvir, K Wiersema

Publications

We present a detailed study of the prompt and afterglow emission from Swift GRB 061126 using BAT, XRT, UVOT data and multicolor optical imaging from 10 ground-based telescopes. GRB 061126 was a long burst (T90 ¼191 s) with four overlapping peaks in its -ray light curve. The X-ray afterglow, observed from 26 minutes to 20 days after the burst, shows a simple power-law decay with X ¼1:290 Æ0:008. Optical observations presented here cover the time range from 258 s (Faulkes Telescope North) to 15 days (Gemini North) after the burst; the decay rate of the optical afterglow shows a steep-to-shallow …

A New Simplified Derivation Of Nash Bargaining Solution, Tanja Magoc, Vladik Kreinovich

Departmental Technical Reports (CS)

In the 1950s, the Nobel Prize winner John F. Nash has shown that under certain conditions, the best solution to the bargaining problem is when the product of the (increase in) utilities is the largest. Nash's derivation assumed that we are looking for strategies that assign a single situation to each bargaining situation. In this paper, we propose a simplified derivation of Nash bargaining solution that does not requires this assumption.

Math In The Middle Newsletter November 2008

Math in the Middle Program Materials

NebraskaMATH Update
M2 Newsletter to Evolve January 2009
NTV Teacher of the Month: Cohort 4’s Michael Ford
A Must-Read for Habits of Mind Problem Seekers
Math Challenge Corner: What do soccer balls and equilateral triangles have in common?

Refuge Update – November/December 2008, Volume 5, Number 6

RefugeUpdate (USFWS-NWRS)

Table of Contents:

Do-It-Yourself Project Makes Sparks, page 3 The Departments of the Interior and Energy spotlight San Andres Refuge’s innovative (and largely homemade) renewable energy program.

In Oregon, a Refuge Teaches Teachers, page 5 Tualatin River National Wildlife Refuge’s ambitious environmental education program acquires a solid reputation.

Focus on . . . International Conservation, pages 6-11 National resource managers around the world look to the Refuge System for on-the-scene advice and training.

Taking Pride, page 16 A former refuge complex project leader in Texas and a super-volunteer in Georgia win 2008 Take Pride in America Awards.

Abrupt Transition From A Free, Repulsive To A Condensed, Attractive Dna Phase, Induced By Multivalent Polyamine Cations, Xiangyun Qiu, Kurt Andresen, Jessica S. Lamb, Lisa W. Kwok, Lois Pollack

Physics and Astronomy Faculty Publications

We have investigated the energetics of DNA condensation by multivalent polyamine cations. Solution small angle x-ray scattering was used to monitor interactions between short 25 base pair dsDNA strands in the free supernatant DNA phase that coexists with the condensed DNA phase. Interestingly, when tetravalent spermine is used, significant inter-DNA repulsion is observed in the free phase, in contrast with the presumed inter-DNA attraction in the coexisting condensed phase. DNA condensation thus appears to be a discrete, first-order-like, transition from a repulsive gaseous to an attractive condensed solid phase, in accord with the reported all-or-none condensation of giant DNA. We …

Live Release Of A Bigeye Sand Tiger Odontaspis Noronhai (Elasmobranchii: Lamniformes) In The Western North Atlantic Ocean, David W. Kerstetter, Mae Taylor

Marine & Environmental Sciences Faculty Articles

No abstract provided.

Academic Achievement Of Students In A Charter Homeschool, Mary A. Leeds Edd

Dissertations

A recent development in education is the public charter school as a homeschool model. In several states across the nation, a child may enroll in an independent study program of a public charter school and base his or her studies in the home. This model in the realm of education is called charter homeschool. The state of California has over 120 operating charter homeschools, also known as independent study programs or non-classroom based charter schools. The delivery of instruction from non-classroom based programs has begun to challenge traditional definitions of public schooling. The increased state accountability demands of student academic …

Who Cares About Polar Regions? Results From A Survey Of U.S. Public Opinion, Lawrence C. Hamilton

Sociology

Abstract

What do members of the general public know about polar regions, and how much do they care? Who knows or cares? This paper explores data from the General Social Survey (GSS), which in 2006 questioned a representative sample of more than 1800 U.S. adults about their knowledge and opinions concerning polar regions. The polar survey items were modeled on long-running GSS assessments of general science knowledge and opinions, recently summarized in the U.S. National Science Board's report Science and Engineering Indicators 2008. Polar knowledge proves to be limited but certainly not absent among survey respondents. Polar knowledge, general science …

Cooling Of The Crust In The Neutron Star Low-Mass X-Ray Binary Mxb 1659-29, Edward M. Cackett, Rudy Wijnands, Jon M. Miller, Edward F. Brown, Nathalie Degenaar

Physics and Astronomy Faculty Research Publications

In quasi-persistent neutron star transients, long outbursts cause the neutron star crust to be heated out of thermal equilibrium with the rest of the star. During quiescence, the crust then cools back down. Such crustal cooling has been observed in two quasi-persistent sources: KS 1731-260 and MXB 1659-29. Here we present an additional Chandra observation of MXB 1659-29 in quiescence, which extends the baseline of monitoring to 6.6 yr after the end of the outburst. This new observation strongly suggests that the crust has thermally relaxed, with the temperature remaining consistent over 1000 days. Fitting the temperature cooling curve with …

Correlation Between The Sample Mean And Sample Variance, Ramalingam Shanmugam

Journal of Modern Applied Statistical Methods

This article obtains a general formula to find the correlation coefficient between the sample mean and variance. Several particular results for major non-normal distributions are extracted to help students in classroom, clients during statistical consulting service.

Size-Biased Generalized Negative Binomial Distribution, Khurshid Ahmad Mir

Journal of Modern Applied Statistical Methods

A size biased generalized negative binomial distribution (SBGNBD) is defined and a recurrence relationship for the moments of SBGNBD is established. The Bayes’ estimator for a parametric function of one parameter when two other parameters of a known size-biased generalized negative binomial distribution is derived. Prior information on one parameter is given by a beta distribution and the parameters in the prior distribution are assigned by computer using Monte Carlo and R-software.

Non-Parametric Quantile Selection For Extreme Distributions, Wan Zawiah Wan Zin, Abdul Aziz Jemain

Journal of Modern Applied Statistical Methods

The objective is to select the best non-parametric quantile estimation method for extreme distributions. This serves as a starting point for further research in quantile application such as in parameter estimation using LQ-moments method. Thirteen methods of non-parametric quantile estimation were applied on six types of extreme distributions and their efficiencies compared. Monte Carlo methods were used to generate the results, which showed that the method of Weighted Kernel estimator of Type 1 was more efficient than the other methods in many cases.

Analyzing Incomplete Categorical Data: Revisiting Maximum Likelihood Estimation (Mle) Procedure, Hoo Ling Ping, M. Ataharul Islam

Journal of Modern Applied Statistical Methods

Incomplete data poses formidable difficulties in the application of statistical techniques and requires special procedures to handle. The most common ways to solve this problem are by ignoring, truncating, censoring or collapsing those data, but these may lead to inappropriate conclusions because those data might contain important information. Most of the research for estimating cell probabilities involving incomplete categorical data is based on the EM algorithm. A likelihood approach is employed for estimating cell probabilities for missing values and makes comparisons between maximum likelihood estimation (MLE) and the EM algorithm. The MLE can provide almost the same estimates as that …

Adaptive Estimation Of Heteroscedastic Linear Regression Model Using Probability Weighted Moments, Faqir Muhammad, Muhammad Aslam, G.R. Pasha

Journal of Modern Applied Statistical Methods

An adaptive estimator is presented by using probability weighted moments as weights rather than conventional estimates of variances for unknown heteroscedastic errors while estimating a heteroscedastic linear regression model. Empirical studies of the data generated by simulations for normal, uniform, and logistically distributed error terms support our proposed estimator to be quite efficient, especially for small samples.

Construction Of Insurance Scoring System Using Regression Models, Noriszura Ismail, Abdul Aziz Jemain

Journal of Modern Applied Statistical Methods

This study suggests the regression models of Lognormal, Normal and Gamma for constructing insurance scoring system. The main advantage of a scoring system is that it can be used by insurers to differentiate between high and low risks insureds, thus allowing the profitability of insureds to be predicted.

End Matter, Jmasm Editors

Journal of Modern Applied Statistical Methods

No abstract provided.

Uniform Color Spaces Based On Ciecam02 And Ipt Color Difference Equations, Yang Xue

Theses

Color difference equations based on the CIECAM02 color appearance model and IPT color space have been developed to fit experimental data. There is no color space in which these color difference equations are Euclidean, e.g. describe distances along a straight line. In this thesis, Euclidean color spaces have been derived for the CIECAM02 and IPT color difference equations, respectively, so that the color difference can be calculated as a simple color distance. Firstly, the Euclidean line element was established, from which terms were derived for the new coordinates of lightness, chroma, and hue angle. Then the spaces were analyzed using …

Co2 Eor And Co2 Sequestration – The Case For Collaboration, University Of North Dakota. Energy And Environmental Research Center

EERC Brochures and Fact Sheets

Fact sheet on energy policies and how they pertain to enhanced oil recovery (EOR) and CO₂ capture and sequestration (CCS). [This item is an outdated or superseded version and retained for historical purposes only. It may no longer reflect current information, policies, or practices.]

What Is Ccs?, University Of North Dakota. Energy And Environmental Research Center

EERC Brochures and Fact Sheets

Fact sheet about carbon capture and storage (CCS) and the Plains CO₂ Reduction (PCOR) Partnership. Outlines the three phases of U.S. Department of Energy National Energy Technology Laboratory’s Regional Carbon Sequestration Partnership program. [This item is an outdated or superseded version and retained for historical purposes only. It may no longer reflect current information, policies, or practices.]

Graduate Connections- November 2008

Graduate Connections: A Newsletter for UNL Graduate Students

In This Issue:

Click on links to navigate the newsletter

Navigating Graduate School......1

Feeling Like the Last Person on Earth?

Intellectual Community

Good Practices in Graduate

Education....................................3

The Institutional Review Board: An Interview with UNL’s Research Compliance Staff

Teaching Tip .................................4

Socratic Questioning

Essential Connections..................5

New and Improved Graduate Studies Web Site

Professional Development...........5

Preparing for Academic Conferences

The Academic Job Interview: Questions to Help You Prepare

Interactions...................................7

Graduate Students to Be Honored with University Fellowships

What Makes a Competitive Fellowship Application?

GSA News

Funding Opportunities.................9

Announcements..........................11

Current Fellowship Applications

Commencement Changes

LGBTQA Reading Group

Calendar......................................12

Word to the Wise.......................13 …

Therapeutic Challenges Of Multi-Being, Kenneth J. Gergen

Psychology Faculty Works

This paper emerges from an attempt to shift the locus of understanding human action from the individual to relationship. In doing so we come to see persons as multi-beings, that is, as constituted within multiple relationships from which they emerge with multiple, incoherent, and often conflicting potentials. Therapy, in this context, becomes a collaborative relationship with the aim of transforming the client's broader relational network. In this view, schooling in a singular practice of therapy artificially limits the therapist's potential, and thus the possible outcomes of the client–therapist relationship. Invited, then, is a reflective eclecticism, in which the myriad potentials …

Morphology Of The Dayside Ionosphere Of Venus: Implications For Ion Outflows, Jane L. Fox

Physics Faculty Publications

The nightside ionosphere of Venus is formed mostly by day-to-night transport of ions below the ionopause, with a small contribution from precipitation of energetic electrons from the wake. This nightward flux of ions should result in dayside ionospheres that are characterized by smaller electron density scale heights at high altitudes than those that are characteristic of diffusive equilibrium. In order to determine both the maximum possible values of the upward fluxes and the upward fluxes implied by comparison of our computed ion and electron density profiles to measurements, we have constructed more than 60 models of the high solar activity …

Nonlinear Magneto-Optic Polarization Rotation With Intense Laser Fields, Paul S. Hsu, Anil K. Patnaik, George R. Welch

Physics Faculty Publications

We have studied the nonlinear Faraday effect with intense linear polarized light in an optically thick atomic rubidium vapor. We demonstrate that the polarization rotation rate (rotation angle per unit magnetic field, in the limit of low field) has a maximum value as the intensity and density are increased. We also show that the optimal sensitivity of an optical magnetometer based on this system reaches a saturation value as the intensity and density are increased.

Genetic Markers Of Igg Influence The Outcome Of Infection With Hepatitis C Virus, Janardan P. Pandey, Aryan M. Namboodiri, Yuqun Luo, Yuping Wu, Robert C. Elston, David L. Thomas, Hugo R. Rosen, James J. Goedert

Mathematics and Statistics Faculty Publications

We examined the role that immunoglobulin GM and KM allotypes—genetic markers of γ and κ chains, respectively—play in the outcome of hepatitis C virus (HCV) infection in white Americans. A total of 119 persons who had cleared HCV and 111 with persistent HCV infection were genotyped for the presence of several GM and KM determinants. Persistent HCV infection was more than three times as likely (odds ratio, 3.50; P = .01) in subjects who were carriers of the GM3 allele than in those who were noncarriers. These results show that particular GM alleles may be important determinants of the outcome …

Laser Channeling Of Bethe-Heitler Pairs, Erik Lotstedt, Ulrich D. Jentschura, Christoph H. Keitel

Physics Faculty Research & Creative Works

Electron-positron pair creation is analyzed for an arrangement involving three external fields: a high-frequency gamma photon, the Coulomb field of a nucleus, and a strong laser wave. The frequency of the incoming gamma photon is assumed to be larger than the threshold for pair production in the absence of a laser, and the peak electric field of the laser is assumed to be much weaker than Schwinger's critical field. The total number of pairs produced is found to be essentially unchanged by the laser field, while the differential cross section is drastically modified. We show that the laser can channel …

Estimation And Model Selection Of Semiparametric Multivariate Survival Functions Under General Censorship, Xiaohong Chen, Yanqin Fan, Demian Pouzo, Zhiliang Ying

Cowles Foundation Discussion Papers

Many models of semiparametric multivariate survival functions are characterized by nonparametric marginal survival functions and parametric copula functions, where different copulas imply different dependence structures. This paper considers estimation and model selection for these semiparametric multivariate survival functions, allowing for misspecified parametric copulas and data subject to general censoring. We first establish convergence of the two-step estimator of the copula parameter to the pseudo-true value defined as the value of the parameter that minimizes the KLIC between the parametric copula induced multivariate density and the unknown true density. We then derive its root–n asymptotically normal distribution and provide a simple …

Motions 2008 Volume 44 Number 3, University Of San Diego School Of Law Student Bar Association

Newspaper, Motions (1987-2019)

No abstract provided.

Toward Evaluating Lighting Design Interface Paradigms For Novice Users, William Brandon Kerr, Fabio Pellacini

Computer Science Technical Reports

Lighting design is a complex and fundamental task in computer cinematography, involving adjustment of light parameters to define final scene appearance. Many lighting interfaces have been proposed to improve lighting design work flow. These paradigms exist in three paradigm categories: direct light parameter manipulation, indirect light feature manipulation (e.g., shadow dragging), and goal-based optimization of light through painting. To this date, no formal evaluation of the relative effectiveness of these methods has been performed. In this paper, we present a first step toward evaluating the three paradigms in the form of a user study with novice users. We focus our …

Managing Gambel Oak In Southwestern Ponderosa Pine Forests: The Status Of Our Knowledge, Scott R. Abella

Public Policy and Leadership Faculty Research

Gambel oak (Quercus gambelii) is a key deciduous species in southwestern ponderosa pine (Pinus ponderosa) forests and is important for wildlife habitat, soil processes, and human values. This report (1) summarizes Gambel oak’s biological characteristics and importance in ponderosa pine forests, (2) synthesizes literature on changes in tree densities and fire frequencies since Euro-American settlement in pine-oak forests, (3) suggests management prescriptions for accomplishing various oak management objectives (for example, increasing diameter growth or acorn production), and (4) provides an appendix containing 203 Gambel oak literature citations organized by subject. Nine studies that reconstructed Gambel oak density changes since settlement …