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2006

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Limit Crossing For Decision Problems, Sharlee Climer, Weixiong Zhang Jan 2006

Limit Crossing For Decision Problems, Sharlee Climer, Weixiong Zhang

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Limit crossing is a methodology in which modified versions of a problem are solved and compared, yielding useful information about the original problem. Pruning rules that are used to exclude portions of search trees are excellent examples of the limit-crossing technique. In our previous work, we examined limit crossing for optimization problems. In this paper, we extend this methodology to decision problems. We demonstrate the use of limit crossing in our design of a tool for identifying K-SAT backbones. This tool is guaranteed to identify all of the backbone variables by solving at most n+1 formulae, where n is the …

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Perceptually Meaningful Image Editing: Depth, Reynold J. Bailey, Cindy Grimm Jan 2006

Perceptually Meaningful Image Editing: Depth, Reynold J. Bailey, Cindy Grimm

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We introduce the concept of perceptually meaningful image editing and present two techniques for manipulating the apparent depth of objects in an image. The user loads an image, selects an object and specifies whether the object should appear closer or further away. The system automatically determines target values for the object and/or background that achieve the desired depth change. These depth editing operations, based on techniques used by traditional artists, manipulate either the luminance or color temperature of different regions of the image. By performing blending in the gradient domain and reconstruction with a Poisson solver, the appearance of false …

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Virtualizing Network Processors, Ben Wun, Jonathan Turner, Patrick Crowley Jan 2006

Virtualizing Network Processors, Ben Wun, Jonathan Turner, Patrick Crowley

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This paper considers the problem of virtualizing the resources of a network processor (NP) in order to allow multiple third-parties to execute their own virtual router software on a single physical router at the same time. Our broad interest is in designing such a router capable of supporting virtual networking. We discuss the issues and challenges involved in this virtualization, and then describe specific techniques for virtualizing both the control and data-plane processors on NPs. For Intel IXP NPs in particular, we present a dynamic, macro-based technique for virtualization that allows multiple virtual routers to run on multiple data plane …

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The Real Effect Of Warm-Cool Colors, Reynold J. Bailey, Cindy M, Grimm, Chris Davoli Jan 2006

The Real Effect Of Warm-Cool Colors, Reynold J. Bailey, Cindy M, Grimm, Chris Davoli

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The phenomenon of warmer colors appearing nearer in depth to viewers than cooler colors has been studied extensively by psychologists and other vision researchers. The vast majority of these studies have asked human observers to view physically equidistant, colored stimuli and compare them for relative depth. However, in most cases, the stimuli presented were rather simple: straight colored lines, uniform color patches, point light sources, or symmetrical objects with uniform shading. Additionally, the colors used were typically highly saturated. Although such stimuli are useful in isolating and studying depth cues in certain contexts, they leave open the question of whether …

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A Proposed Architecture For The Geni Backbone Platform, Jonathan Turner Jan 2006

A Proposed Architecture For The Geni Backbone Platform, Jonathan Turner

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The GENI Project (Global Environment for Network Innovation) is a major NSF-sponsored initiative that seeks to create a national research facility to enable experimental deployment of innovative new network architectures on a sufficient scale to enable realistic evaluation. One key component of the GENI system will be the GENI Backbone Platform (GBP) that provides the resources needed to allow multiple experimental networks to co-exist within the shared GENI infrastructure. This report reviews the objectives for the GBP, reviews the key issues that affect its design and develops a detailed reference architecture in order to provide a concrete example for how …

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Acceleration Of Profile-Hmm Search For Protein Sequences In Reconfigurable Hardware - Master's Thesis, May 2006 , Rahul Pratap Maddimsetty Jan 2006

Acceleration Of Profile-Hmm Search For Protein Sequences In Reconfigurable Hardware - Master's Thesis, May 2006 , Rahul Pratap Maddimsetty

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Profile Hidden Markov models are highly expressive representations of functional units, or motifs, conserved across protein sequences. Profile-HMM search is a powerful computational technique that is used to annotate new sequences by identifying occurrences of known motifs in them. With the exponential growth of protein databases, there is an increasing demand for acceleration of such techniques. We describe an accelerator for the Viterbi algorithm using a two-stage pipelined design in which the first stage is implemented in parallel reconfigurable hardware for greater speedup. To this end, we identify algorithmic modifications that expose a high level of parallelism and characterize their …

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Fair Efficiency, Or Low Average Delay Without Starvation, Christoph Jechlitschek, Sergey Gorinksky Jan 2006

Fair Efficiency, Or Low Average Delay Without Starvation, Christoph Jechlitschek, Sergey Gorinksky

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Elastic applications are primarily interested in minimal delay achievable for their messages under current network load. In this paper, we investigate how to transmit such messages over a bottleneck link efficiently and fairly.

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Discovering Weak Community Structures In Large Biological Networks , Jianhua Ruan, Weixiong Zhang Jan 2006

Discovering Weak Community Structures In Large Biological Networks , Jianhua Ruan, Weixiong Zhang

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Identifying intrinsic structures in large networks is a fundamental problem in many fields, such as biology, engineering and social sciences. Motivated by biology applications, in this paper we are concerned with identifying community structures, which are densely connected sub-graphs, in large biological networks. We address several critical issues for finding community structures. First, biological networks directly constructed from experimental data often contain spurious edges and may also miss genuine connections. As a result, community structures in biological networks are often weak. We introduce simple operations to capture local neighborhood structures for identifying weak communities. Second, we consider the issue of …

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Feature Detection Using Curvature Maps And The Min-Cut/Max-Flow Graph Cut Algorithm, Timothy Gatzke, Cindy Grimm Jan 2006

Feature Detection Using Curvature Maps And The Min-Cut/Max-Flow Graph Cut Algorithm, Timothy Gatzke, Cindy Grimm

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Automatic detection of features in three-dimensional objects is a critical part of shape matching tasks such as object registration and recognition. Previous approaches to local surface matching have either focused on man-made objects, where features are generally well-defined, or required some type of user interaction to select features. Manual selection of corresponding features and subjective determination of the difference between objects are time consuming processes requiring a high level of expertise. Curvature is a useful property of a surface, but curvature calculation on a discrete mesh is often noisy and not always accurate. However, the em Curvature Map, which represents …

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The Meta-Theory Of Q_0 In The Calculus Of Inductive Constructions, Master's Thesis, May 2006, Li-Yang Tan Jan 2006

The Meta-Theory Of Q_0 In The Calculus Of Inductive Constructions, Master's Thesis, May 2006, Li-Yang Tan

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The notion of a proof is central to all of mathematics. In the language of formal logic, a proof is a finite sequence of inferences from a set of axioms, and any statement one yields from such a finitistic procedure is called a theorem. For better or for worse, this is far from the form a traditional mathematical proof takes. Mathematicians write proofs that omit routine logical steps, and details deemed tangential to the central result are often elided. These proofs are fuzzy and human-centric, and a great amount of context is assumed on the part of the reader. While …

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The Remote-Clique Problem Revisited, Benjamin E. Birnbaum Jan 2006

The Remote-Clique Problem Revisited, Benjamin E. Birnbaum

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Given a positive integer k and a complete graph with non-negative edge weights that satisfy the triangle inequality, the remote-clique problem is to find a subset of k vertices having a maximum-weight induced subgraph. A greedy algorithm for the problem has been shown to have an approximation ratio of 4, but this analysis was not shown to be tight. In this thesis, we present an algorithm called d-Greedy Augment that generalizes this greedy algorithm (they are equivalent when d = 1). We use the technique of factor-revealing linear programs to prove that d-Greedy Augment, which has a running time of …

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Smooth Key-Framing Using The Image Plane, Leon Barrett, Cindy Grimm Jan 2006

Smooth Key-Framing Using The Image Plane, Leon Barrett, Cindy Grimm

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This paper demonstrates the use of image-space constraints for key frame interpolation. Interpolating in image-space results in sequences with predictable and controlable image trajectories and projected size for selected objects, particularly in cases where the desired center of rotation is not fixed or when the key frames contain perspective distortion changes. Additionally, we provide the user with direct image-space control over {\em how} the key frames are interpolated by allowing them to directly edit the object's projected size and trajectory. Image-space key frame interpolation requires solving the inverse camera problem over a sequence of point constraints. This is a variation …

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Control Of Decoherence In Open Quantum Systems, Narayan Ganesan Jan 2006

Control Of Decoherence In Open Quantum Systems, Narayan Ganesan

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No abstract provided.

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Design Of A Diversified Network Substrate, Jonathan Turner Jan 2006

Design Of A Diversified Network Substrate, Jonathan Turner

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A diversified network substrate enables multiple end-to-end metanetworks to co-exist within a shared physical infrastructure. Metanetworks are implemented by metarouters, hosted by substrate routers, and metarouters are connected by metalinks. The substrate allocates resources (both link bandwidth and processing resources) to metarouters based on advance reservations received from metanetwork planning systems. It also enables dynamic creation of access metalinks, connecting end systems to metarouters, and supports mobility of end systems under the control of their metanetworks. This report defines a model for a diversified internet and presents a detailed design of the substrate that enables metanetworks to co-exist. The design …

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Tuple Space Coordination Across Space & Time, Gruia-Catalin Roman, Radu Handorean, Chenyang Lu Jan 2006

Tuple Space Coordination Across Space & Time, Gruia-Catalin Roman, Radu Handorean, Chenyang Lu

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CAST is a coordination model designed to support interactions among agents executing on hosts that make up a mobile ad hoc network (MANET). From an application programmer’s point of view, CAST makes it possible for operations to be executed at arbitrary locations in space, at prescribed times which may be in the future, and on remote hosts even when no end-to-end connected route exists between the initiator and target(s) of the operation. To accomplish this, CAST assumes that each host moves in space in accordance with a motion profile which is accurate but which at any given time extends into …

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Agilla: A Mobile Agent Middleware For Sensor Networks, Chien-Liang Fok, Gruia-Catalin Roman, Chenyang Lu Jan 2006

Agilla: A Mobile Agent Middleware For Sensor Networks, Chien-Liang Fok, Gruia-Catalin Roman, Chenyang Lu

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Agilla is a mobile agent middleware for sensor networks. Mobile agents are special processes that can migrate across sensors. They increase network flexibility by enabling active in-network reprogramming. Neighbor lists and tuple spaces are used for agent coordination. Agilla was originally implemented on Mica2 motes, but has been ported to other platforms. Its Mica2 implementation consumes 41.6KB of code and 3.59KB of data memory. Agents can move five hops in less than 1.1s with over 92% success. Agilla was used to develop multiple applications related to fire detection and tracking, cargo container monitoring, and robot navigation.

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Dynamic Conflict-Free Query Scheduling For Wireless Sensor Networks, Octav Chipara, Chenyang Lu, John Stankovic Jan 2006

Dynamic Conflict-Free Query Scheduling For Wireless Sensor Networks, Octav Chipara, Chenyang Lu, John Stankovic

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With the emergence of high data rate sensor network applications, there is an increasing demand for high-performance query services in such networks. To meet this challenge, we present Dynamic Conflict-free Query Scheduling (DCQS), a novel scheduling technique for queries in wireless sensor networks. In contrast to earlier TDMA protocols designed for general-purpose networks and workloads, DCQS is specifically designed for query services supporting in-network data aggregation. DCQS has several important features. First, it optimizes the query performance and energy efficiency by exploiting the temporal properties and precedence constraints introduced by data aggregation. Second, it can efficiently adapt to dynamic workloads …

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Mobiwork: Mobile Workflow For Manets, Gregory Hackmann, Rohan Sen, Mart Haitjema, Gruia-Catalin Roman, Gill Jan 2006

Mobiwork: Mobile Workflow For Manets, Gregory Hackmann, Rohan Sen, Mart Haitjema, Gruia-Catalin Roman, Gill

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The workflow model is well suited for scenarios where many entities work collaboratively towards a common goal, and is used widely today to model complex business processes. However, the fundamental workflow model is very powerful and can be applied to a wider variety of application domains. This paper represents an initial investigation into the possibility of using workflows to model collaboration in an ad hoc mobile environment. Moving to a mobile setting introduces many challenges as the mobility of the participants in a workflow imposes constraints on allocation of workflow tasks, coordination among participants, and marshaling of results. We present …

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Automatic Application-Specific Customization Of Softcore Processor Microarchitecture, Masters Thesis, May 2006, Shobana Padmanabhan Jan 2006

Automatic Application-Specific Customization Of Softcore Processor Microarchitecture, Masters Thesis, May 2006, Shobana Padmanabhan

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Applications for constrained embedded systems are subject to strict runtime and resource utilization bounds. With soft core processors, application developers can customize the processor for their application, constrained by available hardware resources but aimed at high application performance. The more reconfigurable the processor is, the more options the application developers will have for customization and hence increased potential for improving application performance. However, such customization entails developing in-depth familiarity with all the parameters, in order to configure them effectively. This is typically infeasible, given the tight time-to-market pressure on the developers. Alternatively, developers could explore all possible configurations, but being …

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Reusable Models For Timing And Liveness Analysis Of Middleware For Distributed Real-Time And Embedded Systems, Venkita Subramonian, Christopher Gill, Cesar Sanchez, Henny Sipma Jan 2006

Reusable Models For Timing And Liveness Analysis Of Middleware For Distributed Real-Time And Embedded Systems, Venkita Subramonian, Christopher Gill, Cesar Sanchez, Henny Sipma

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Distributed real-time and embedded (DRE) systems have stringent constraints on timeliness and other properties whose assurance is crucial to correct system behavior. Formal tools and techniques play a key role in verifying and validating system properties. However, many DRE systems are built using middleware frameworks that have grown increasingly complex to address the diverse requirements of a wide range of applications. How to apply formal tools and techniques effectively to these systems, given the range of middleware configuration options available, is therefore an important research problem. This paper makes three contributions to research on formal verification and validation of middleware-based …

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Distributed Utilization Control For Real-Time Clusters With Load Balancing, Yong Fu, Hongan Wang, Chenyang Lu, Ramu S. Chandra Jan 2006

Distributed Utilization Control For Real-Time Clusters With Load Balancing, Yong Fu, Hongan Wang, Chenyang Lu, Ramu S. Chandra

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Recent years have seen rapid growth of online services that rely on large-scale server clusters to handle high volume of requests. Such clusters must adaptively control the CPU utilizations of many processors in order to maintain desired soft real-time performance and prevent system overload in face of unpredictable workloads. This paper presents DUC-LB, a novel distributed utilization control algorithm for cluster-based soft real-time applications. Compared to earlier works on utilization control, a distinguishing feature of DUC-LB is its capability to handle system dynamics caused by load balancing, which is a common and essential component of most clusters today. Simulation results …

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The Design, Modeling, And Implementation Of Group Scheduling For Isolation Of Computations From Adversarial Interference, Terry Tidwell, Noah Watkins, Venkita Subramonian, Douglas Niehaus, Armando Gill, Migliaccio Jan 2006

The Design, Modeling, And Implementation Of Group Scheduling For Isolation Of Computations From Adversarial Interference, Terry Tidwell, Noah Watkins, Venkita Subramonian, Douglas Niehaus, Armando Gill, Migliaccio

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To isolate computations from denial of service (DoS) attacks and other forms of adversarial interference, it is necessary to constrain the effects of interactions among computations. This paper makes four contributions to research on isolation of computations from adversarial interference: (1) it describes the design and implementation of a kernel level scheduling policy to control the effects of adversarial attacks on computations’ execution; (2) it presents formal models of the system components that are involved in a representative DoS attack scenario; (3) it shows how model checking can be used to analyze that example scenario, under default Linux scheduling semantics …

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Activepdf-Toolk, Washington University In St. Louis Computer Science Engineering Department Jan 2006

Activepdf-Toolk, Washington University In St. Louis Computer Science Engineering Department

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This document provides information for deploying activePDF Toolkit Professional in a development environment. This document is organized into four sections: Getting Started, Tutorials, Technical Reference and the Toolkit Appendices. The Getting Started section covers setup and installation, includes a product overview and information related to operating Toolkit Professional. Tutorials includes examples of many Toolkit features, including PDF generation and form filling. All of the tutorials can be used with activePDF Toolkit. Technical Reference provides detailed information on Toolkit’s objects, subobjects, methods and properties.

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Design And Evaluation Of A Blast Ungapped Extension Accelerator, Master's Thesis, Joseph M. Lancaster Jan 2006

Design And Evaluation Of A Blast Ungapped Extension Accelerator, Master's Thesis, Joseph M. Lancaster

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The amount of biosequence data being produced each year is growing exponentially. Extracting useful information from this massive amount of data is becoming an increasingly difficult task. This thesis focuses on accelerating the most widely-used software tool for analyzing genomic data, BLAST. This thesis presents Mercury BLAST, a novel method for accelerating searches through massive DNA databases. Mercury BLAST takes a streaming approach to the BLAST computation by offloading the performance-critical sections onto reconfigurable hardware. This hardware is then used in combination with the processor of the host system to deliver BLAST results in a fraction of the time of …

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Hail: An Algorithm For The Hardware Accelerated Identification Of Languages, Master's Thesis, May 2006, Charles M. Kastner Jan 2006

Hail: An Algorithm For The Hardware Accelerated Identification Of Languages, Master's Thesis, May 2006, Charles M. Kastner

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This thesis examines in detail the Hardware-Accelerated Identification of Languages (HAIL) project. The goal of HAIL is to provide an accurate means to identify the language and encoding used in streaming content, such as documents passed over a high-speed network. HAIL has been implemented on the Field-programmable Port eXtender (FPX), an open hardware platform developed at Washington University in St. Louis. HAIL can accurately identify the primary languages and encodings used in text at rates much higher than what can be achieved by software algorithms running on microprocessors.

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Sliver: A Bpel Workflow Process Execution Engine For Mobile Devices, Gregory Hackmann, Mart Haitjema, Christopher Gill, Catalin-Gruia Roman Jan 2006

Sliver: A Bpel Workflow Process Execution Engine For Mobile Devices, Gregory Hackmann, Mart Haitjema, Christopher Gill, Catalin-Gruia Roman

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The Business Process Execution Language (BPEL) has become the dominant means for expressing traditional business processes as workflows. The widespread deployment of mobile devices like PDAs and mobile phones has created a vast computational and communication resource for these workflows to exploit. However, BPEL so far has been deployed only on relatively heavyweight server platforms such as Apache Tomcat, leaving the potential created by these lower-end devices untapped. This paper presents Sliver, a BPEL workflow process execution engine that supports a wide variety of devices ranging from mobile phones to desktop PCs. We discuss the design decisions that allow Sliver …

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Adaptive Embedded Roadmaps For Sensor Networks, Gazihan Alankus, Nuzhet Atay, Chenyang Lu, Burchan Bayazit Jan 2006

Adaptive Embedded Roadmaps For Sensor Networks, Gazihan Alankus, Nuzhet Atay, Chenyang Lu, Burchan Bayazit

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In this paper, we propose a new approach to wireless sensor network assisted navigation while avoiding moving dangers. Our approach relies on an embedded roadmap in the sensor network that always contains safe paths. The roadmap is adaptive, i.e., it adapts its topology to changing dangers. The mobile robots in the environment uses the roadmap to reach their destinations. We evaluated the performance of embedded roadmap both in simulations using realistic conditions and with real hardware. Our results show that the proposed navigation algorithm is better suited for sensor networks than traditional navigation field based algorithms. Our observations suggest that …

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An Improved Analysis For A Greedy Remote-Clique Algorithm Using Factor-Revealing Lps, Benjamin E. Birnbaum, Kenneth J. Goldman Jan 2006

An Improved Analysis For A Greedy Remote-Clique Algorithm Using Factor-Revealing Lps, Benjamin E. Birnbaum, Kenneth J. Goldman

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Given a complete graph with nonnegative edge weights satisfying the triangle inequality and a positive integer p, the remote-clique problem is to find a subset of p vertices having a maximum-weight induced subgraph. A simple greedy algorithm for the problem has been shown to have an approximation ratio of 4, but a tight example has not been provided. In this paper, we use the technique of factor revealing linear programs to prove that this algorithm actually achieves an approximation ratio of 2, matching the best-known ratio for the problem. The greedy algorithm's running time of O(pn) makes it the fastest …

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Real-Time Memory Management: Life And Times, Andrew Borg, Andy Wellings, Christopher Gill, Ron K. Cytron Jan 2006

Real-Time Memory Management: Life And Times, Andrew Borg, Andy Wellings, Christopher Gill, Ron K. Cytron

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As high integrity real-time systems become increasingly large and complex, forcing a static model of memory usage becomes untenable. The challenge is to provide a dynamic memory model that guarantees tight and bounded time and space requirements without overburdening the developer with memory concerns. This paper provides an analysis of memory management approaches in order to characterise the tradeoffs across three semantic domains: space, time and a characterisation of memory usage information such as the lifetime of objects. A unified approach to distinguishing the merits of each memory model highlights the relationship across these three domains, thereby identifying the class …

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Multimodal Congestion Control For Low Stable-State Queuing, Maxim Podlesny, Sergey Gorinsky Jan 2006

Multimodal Congestion Control For Low Stable-State Queuing, Maxim Podlesny, Sergey Gorinsky

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To discover an efficient fair sending rate for a flow, Transmission Control Protocol (TCP) saturates the bottleneck link and its buffer until the router discards a packet. Such TCP-caused queuing is detrimental for interactive and other delay-sensitive applications. In this paper, we present Multimodal Control Protocol (MCP) which strives to maintain low queues and avoid congestion losses at network links. The multimodal MCP engages routers and hosts in limited explicit communication. A distinguishing property of MCP is stable transmission after converging to efficient fair states. To ensure convergence to fairness, MCP incorporates an innovative mechanism that enables a flow to …

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