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In-Vivo Imaging Of Magnetic Fields Induced By Transcranial Direct Current Stimulation (Tdcs) In Human Brain Using Mri, Mayank V. Jog, Robert X. Smith, Kay Jann, Walter Dunn, Belen Lafon, Dennis Truong, Allan Wu, Lucas C. Parra, Marom Bikson, Danny J. J. Wang Oct 2016

In-Vivo Imaging Of Magnetic Fields Induced By Transcranial Direct Current Stimulation (Tdcs) In Human Brain Using Mri, Mayank V. Jog, Robert X. Smith, Kay Jann, Walter Dunn, Belen Lafon, Dennis Truong, Allan Wu, Lucas C. Parra, Marom Bikson, Danny J. J. Wang

Publications and Research

Transcranial direct current stimulation (tDCS) is an emerging non-invasive neuromodulation technique that applies mA currents at the scalp to modulate cortical excitability. Here, we present a novel magnetic resonance imaging (MRI) technique, which detects magnetic fields induced by tDCS currents. This technique is based on Ampere’s law and exploits the linear relationship between direct current and induced magnetic fields. Following validation on a phantom with a known path of electric current and induced magnetic field, the proposed MRI technique was applied to a human limb (to demonstrate invivo feasibility using simple biological tissue) and human heads (to demonstrate feasibility in …


Interplay Between Evanescence And Disorder In Deep Subwavelength Photonic Structures, Hanan Herzig Sheinfux, Ido Kaminer, Azriel Z. Genack, Mordechai Segev Oct 2016

Interplay Between Evanescence And Disorder In Deep Subwavelength Photonic Structures, Hanan Herzig Sheinfux, Ido Kaminer, Azriel Z. Genack, Mordechai Segev

Publications and Research

Deep subwavelength features are expected to have minimal impact on wave transport. Here we show that in contrast to this common understanding, disorder can have a dramatic effect in a one-dimensional disordered optical system with spatial features a thousand times smaller than the wavelength. We examine a unique regime of Anderson localization where the localization length is shown to scale linearly with the wavelength instead of diverging, because of the role of evanescent waves. In addition, we demonstrate an unusual order of magnitude enhancement of transmission induced due to localization. These results are described for electromagnetic waves, but are directly …


Fhf2 Gene Deletion Causes Temperature-Sensitive Cardiac Conduction Failure, David S. Park, Akshay Shekhar, Christopher Marra, Xianming Lin, Carolina Vasquez, Sergio Solinas, Kevin Kelley, Gregory Morley, Mitchell Goldfarb, Glenn I. Fishman Oct 2016

Fhf2 Gene Deletion Causes Temperature-Sensitive Cardiac Conduction Failure, David S. Park, Akshay Shekhar, Christopher Marra, Xianming Lin, Carolina Vasquez, Sergio Solinas, Kevin Kelley, Gregory Morley, Mitchell Goldfarb, Glenn I. Fishman

Publications and Research

Fever is a highly conserved systemic response to infection dating back over 600 million years. Although conferring a survival benefit, fever can negatively impact the function of excitable tissues, such as the heart, producing cardiac arrhythmias. Here we show that mice lacking fibroblast growth factor homologous factor 2 (FHF2) have normal cardiac rhythm at baseline, but increasing core body temperature by as little as 3 C causes coved-type STelevations and progressive conduction failure that is fully reversible upon return to normothermia. FHF2-deficient cardiomyocytes generate action potentials upon current injection at 25 C but are unexcitable at 40 C. The absence …


Wsq: Queer Methods Editor's Note, Cynthia Chris Oct 2016

Wsq: Queer Methods Editor's Note, Cynthia Chris

Publications and Research

This Editor's Note introduces the WSQ issue "Queer Methods," co-edited by Matt Brim and Amin Ghaziani, which asks, how is the work of queer scholarship, in an array of disciplines, done?


Evolutionary Interpretations Of Mycobacteriophage Biodiversity And Host-Range Through The Analysis Of Codon Usage Bias, Laura A. Esposito, Swati Gupta, Fraida Streiter, Ashley Prasad, John J. Dennehy Oct 2016

Evolutionary Interpretations Of Mycobacteriophage Biodiversity And Host-Range Through The Analysis Of Codon Usage Bias, Laura A. Esposito, Swati Gupta, Fraida Streiter, Ashley Prasad, John J. Dennehy

Publications and Research

In an genomics course sponsored by the Howard Hughes Medical Institute (HHMI), undergraduate students have isolated and sequenced the genomes of more than 1,150 mycobacteriophages, creating the largest database of sequenced bacteriophages able to infect a single host, Mycobacterium smegmatis, a soil bacterium. Genomic analysis indicates that these mycobacteriophages can be grouped into 26 clusters based on genetic similarity. These clusters span a continuum of genetic diversity, with extensive genomic mosaicism among phages in different clusters. However, little is known regarding the primary hosts of these mycobacteriophages in their natural habitats, nor of their broader host ranges. As such, it …


Ben Domain Protein Elba2 Can Functionally Substitute For Linker Histone H1 In Drosophila In Vivo, Na Xu, Xingwu Lu, Harsh Kavi, Alexander V. Emelyanov, Travis J. Bernardo, Elena Vershilova, Arthur I. Skoultchi, Dmitry V. Fyodorov Sep 2016

Ben Domain Protein Elba2 Can Functionally Substitute For Linker Histone H1 In Drosophila In Vivo, Na Xu, Xingwu Lu, Harsh Kavi, Alexander V. Emelyanov, Travis J. Bernardo, Elena Vershilova, Arthur I. Skoultchi, Dmitry V. Fyodorov

Publications and Research

Metazoan linker histones are essential for development and play crucial roles in organization of chromatin, modification of epigenetic states and regulation of genetic activity. Vertebrates express multiple linker histone H1 isoforms, which may function redundantly. In contrast, H1 isoforms are not present in Dipterans, including D. melanogaster, except for an embryo-specific, distantly related dBigH1. Here we show that Drosophila BEN domain protein Elba2, which is expressed in early embryos and was hypothesized to have insulator-specific functions, can compensate for the loss of H1 in vivo. Although the Elba2 gene is not essential, its mutation causes a disruption of normal internucleosomal …


Implementing An Mhealth System For Substance Use Disorders In Primary Care: A Mixed Methods Study Of Clinicians’ Initial Expectations And First Year Experiences, Marie-Louise Mares, David H. Gustafson, Joseph E. Glass, Andrew Quanbeck, Helene Mcdowell, Fiona Mctavish, Amy K. Atwood, Lisa A. Marsch, Chanetelle Thomas, Dhavan Shah, Randall Brown, Andrew Isham, Mary Jane Nealon, Victoria Ward Sep 2016

Implementing An Mhealth System For Substance Use Disorders In Primary Care: A Mixed Methods Study Of Clinicians’ Initial Expectations And First Year Experiences, Marie-Louise Mares, David H. Gustafson, Joseph E. Glass, Andrew Quanbeck, Helene Mcdowell, Fiona Mctavish, Amy K. Atwood, Lisa A. Marsch, Chanetelle Thomas, Dhavan Shah, Randall Brown, Andrew Isham, Mary Jane Nealon, Victoria Ward

Publications and Research

Background: Millions of Americans need but don’t receive treatment for substance use, and evidence suggests that addiction-focused interventions on smart phones could support their recovery. There is little research on implementation of addiction-related interventions in primary care, particularly in Federally Qualified Health Centers (FQHCs) that provide primary care to underserved populations. We used mixed methods to examine three FQHCs’ implementation of Seva, a smart-phone app that offers patients online support/discussion, health-tracking, and tools for coping with cravings, and offers clinicians information about patients’ health tracking and relapses. We examined (a) clinicians’ initial perspectives about implementing Seva, and (b) the first …


A Pretargeted Approach For The Multimodal Pet/Nirf Imaging Of Colorectal Cancer, Pierre Adumeau, Kathryn E. Carnazza, Christian Brand, Sean D. Carlin, Thomas Reiner, Brian J. Agnew, Jason S. Lewis, Brian M. Zeglis Sep 2016

A Pretargeted Approach For The Multimodal Pet/Nirf Imaging Of Colorectal Cancer, Pierre Adumeau, Kathryn E. Carnazza, Christian Brand, Sean D. Carlin, Thomas Reiner, Brian J. Agnew, Jason S. Lewis, Brian M. Zeglis

Publications and Research

The complementary nature of positron emission tomography (PET) and near-infrared fluorescence (NIRF) imaging makes the development of strategies for the multimodal PET/NIRF imaging of cancer a very enticing prospect. Indeed, in the context of colorectal cancer, a single multimodal PET/NIRF imaging agent could be used to stage the disease, identify candidates for surgical intervention, and facilitate the image-guided resection of the disease. While antibodies have proven to be highly effective vectors for the delivery of radioisotopes and fluorophores to malignant tissues, the use of radioimmunoconjugates labeled with long-lived nuclides such as 89Zr poses two important clinical complications: high radiation doses …


Surficial Geology Of York College Campus (Queens) And Montauk Point (Long Island): An Open Access To Geoscience Education, Nazrul I. Khandaker, Stanley Schleifer, Krishna Mahabir, Erik Menjivar, Ality Aghedo, Dennis Baidoo, Tenzin Choeying, Vanessa Erwin, Jonathan Xavier, Laboni Molla, Akeed Alrubay Sep 2016

Surficial Geology Of York College Campus (Queens) And Montauk Point (Long Island): An Open Access To Geoscience Education, Nazrul I. Khandaker, Stanley Schleifer, Krishna Mahabir, Erik Menjivar, Ality Aghedo, Dennis Baidoo, Tenzin Choeying, Vanessa Erwin, Jonathan Xavier, Laboni Molla, Akeed Alrubay

Publications and Research

To evaluate compositional and textural differences among the samples collected from York College (YC) campus (Queens), Montauk Point (MP) and Hither Hills (HH), Long Island, emphasis is given to the general geologic setting, overall grain size distribution, and relative abundances of light and heavy mineral assemblages. Geologic setting encompasses outwash plains (York College), fluvioglacial and glacial (Montauk Point) and beach and dune complex (Hither Hills). YC samples were collected from depth ranging 40 cm to 250 cm and are mostly an assortment of medium to coarse sand, granule to cobble sized, minor silt, and clay. Presence of low angle cross …


Fhf-Independent Conduction Of Action Potentials Along The Leak-Resistant Cerebellar Granule Cell Axon, Katarzyna Dover, Christopher Marra, Sergio Solinas, Marko Popovic, Sathyaa Subramaniyam, Dejan Zecevic, Egidio D'Angelo, Mitchell Goldfarb Sep 2016

Fhf-Independent Conduction Of Action Potentials Along The Leak-Resistant Cerebellar Granule Cell Axon, Katarzyna Dover, Christopher Marra, Sergio Solinas, Marko Popovic, Sathyaa Subramaniyam, Dejan Zecevic, Egidio D'Angelo, Mitchell Goldfarb

Publications and Research

Neurons in vertebrate central nervous systems initiate and conduct sodium action potentials in distinct subcellular compartments that differ architecturally and electrically. Here, we report several unanticipated passive and active properties of the cerebellar granule cell’s unmyelinated axon. Whereas spike initiation at the axon initial segment relies on sodium channel (Nav)-associated fibroblast growth factor homologous factor (FHF) proteins to delay Nav inactivation, distal axonal Navs show little FHF association or FHF requirement for high-frequency transmission, velocity and waveforms of conducting action potentials. In addition, leak conductance density along the distal axon is estimated as o1% that of somatodendritic membrane. The faster …


The Capacity Of Cognitive Control Estimated From A Perceptual Decision Making Task, Tingting Wu, Alexander J. Dufford, Melissa-Ann Mackie, Laura J. Egan, Jin Fan Sep 2016

The Capacity Of Cognitive Control Estimated From A Perceptual Decision Making Task, Tingting Wu, Alexander J. Dufford, Melissa-Ann Mackie, Laura J. Egan, Jin Fan

Publications and Research

Cognitive control refers to the processes that permit selection and prioritization of information processing in different cognitive domains to reach the capacity-limited conscious mind. Although previous studies have suggested that the capacity of cognitive control itself is limited, a direct quantification of this capacity has not been attempted. In this behavioral study, we manipulated the information rate of cognitive control by parametrically varying both the uncertainty of stimul measured as information entropy and the exposure time of the stimuli. We used the relationship between the participants’ response accuracy and the information rate of cognitive control (in bits per second, bps) …


Free Energy-Based Virtual Screening And Optimization Of Rnase H Inhibitors Of Hiv‑1 Reverse Transcriptase, Baofeng Zhang, Michael P. D'Erasmo, Ryan P. Murelli, Emilio Gallicchio Sep 2016

Free Energy-Based Virtual Screening And Optimization Of Rnase H Inhibitors Of Hiv‑1 Reverse Transcriptase, Baofeng Zhang, Michael P. D'Erasmo, Ryan P. Murelli, Emilio Gallicchio

Publications and Research

We report the results of a binding free energy-based virtual screening campaign of a library of 77 α-hydroxytropolone derivatives against the challenging RNase H active site of the reverse transcriptase (RT) enzyme of human immunodeficiency virus-1. Multiple protonation states, rotamer states, and binding modalities of each compound were individually evaluated. The work involved more than 300 individual absolute alchemical binding free energy parallel molecular dynamics calculations and over 1 million CPU hours on national computing clusters and a local campus computational grid. The thermodynamic and structural measures obtained in this work rationalize a series of characteristics of this system useful …


Myelinating Glia Differentiation Is Regulated By Extracellular Matrix Elasticity, Mateusz M. Urbanski, Lyle Kingsbury, Daniel Moussouros, Imran Kassim, Saraf Mehjabeen, Navid Paknejad, Alicia Meléndez Sep 2016

Myelinating Glia Differentiation Is Regulated By Extracellular Matrix Elasticity, Mateusz M. Urbanski, Lyle Kingsbury, Daniel Moussouros, Imran Kassim, Saraf Mehjabeen, Navid Paknejad, Alicia Meléndez

Publications and Research

The mechanical properties of living tissues have a significant impact on cell differentiation, but remain unexplored in the context of myelin formation and repair. In the PNS, the extracellular matrix (ECM) incorporates a basal lamina significantly denser than the loosely organized CNS matrix. Inhibition of non-muscle myosin II (NMII) enhances central but impairs peripheral myelination and NMII has been implicated in cellular responses to changes in the elasticity of the ECM. To directly evaluate whether mechanotransduction plays a role in glial cell differentiation, we cultured Schwann cells (SC) and oligodendrocytes (OL) on matrices of variable elastic modulus, mimicking either their …


Ifn-G Induces Histone 3 Lysine 27 Trimethylation In A Small Subset Of Promoters To Stably Silence Gene Expression In Human Macrophages, Yu Qiao, Kyuho Kang, Eugenia Giannopoulou, Celeste Fang, Lionel B. Ivashkiv Sep 2016

Ifn-G Induces Histone 3 Lysine 27 Trimethylation In A Small Subset Of Promoters To Stably Silence Gene Expression In Human Macrophages, Yu Qiao, Kyuho Kang, Eugenia Giannopoulou, Celeste Fang, Lionel B. Ivashkiv

Publications and Research

The mechanisms by which IFN-g activates expression of interferon-stimulated genes that have inflammatory and host defense functions are well understood. In contrast, little is known about how IFN-g represses gene expression. By using transcriptomic and epigenomic analysis, we found that stable repression of a small group of genes by IFN-g is associated with recruitment of the histone methyltransferase EZH2 and deposition of the negative mark histone 3 lysine 27 trimethylation (H3K27me3) at their promoters. Repressed genes included MERTK, PPARG, and RANK, which have anti-inflammatory functions and promote osteoclast differentiation. Gene repression and H3K27me3 persisted after IFN-g signaling was terminated, and …


Receptor-Type Guanylyl Cyclase At 76c (Gyc76c) Regulates De Novo Lumen Formation During Drosophila Tracheal Development, Monn Monn Myat, Unisha Patel Sep 2016

Receptor-Type Guanylyl Cyclase At 76c (Gyc76c) Regulates De Novo Lumen Formation During Drosophila Tracheal Development, Monn Monn Myat, Unisha Patel

Publications and Research

Lumen formation and maintenance are important for the development and function of essential organs such as the lung, kidney and vasculature. In the Drosophila embryonic trachea, lumena formde novo to connect the different tracheal branches into an interconnected network of tubes. Here, we identify a novel role for the receptor type guanylyl cyclase at 76C (Gyc76C) in de novo lumen formation in the Drosophila trachea.We show that in embryosmutant for gyc76C or its downsteam effector protein kinase G (PKG) 1, tracheal lumena are disconnected. Dorsal trunk (DT) cells of gyc76C mutant embryos migrate to contact each other and complete the …


Hyperplanes That Intersect Each Ray Of A Cone Once And A Banach Space Counterexample, Chris Mccarthy Sep 2016

Hyperplanes That Intersect Each Ray Of A Cone Once And A Banach Space Counterexample, Chris Mccarthy

Publications and Research

Suppose � is a cone contained in real vector space �. When does � contain a hyperplane � that intersects each of the 0-rays in �\{0} exactly once? We build on results found in Aliprantis, Tourky, and Klee Jr.’s work to give a partial answer to this question.We also present an example of a salient, closed Banach space cone � for which there does not exist a hyperplane that intersects each 0-ray in � \ {0} exactly once.


Temporal Regularity Increases With Repertoire Complexity In The Australian Pied Butcherbird’S Song, Eathan Janney, Hollis Taylor, Constance Scharff, David Rothenberg, Lucas C. Parra, Ofer Tchernichovski Sep 2016

Temporal Regularity Increases With Repertoire Complexity In The Australian Pied Butcherbird’S Song, Eathan Janney, Hollis Taylor, Constance Scharff, David Rothenberg, Lucas C. Parra, Ofer Tchernichovski

Publications and Research

Music maintains a characteristic balance between repetition and novelty. Here, we report a similar balance in singing performances of free-living Australian pied butcherbirds. Their songs include many phrase types. The more phrase types in a bird’s repertoire, the more diverse the singing performance can be. However, without sufficient temporal organization, avian listeners may find diverse singing performances difficult to perceive and memorize. We tested for a correlation between the complexity of song repertoire and the temporal regularity of singing performance. We found that different phrase types often share motifs (notes or stereotyped groups of notes). These shared motifs reappeared in …


Nmr And Structural Data For Connexin 32 And Connexin 26 N-Terminal Peptides, Yuskel Batir, Thaddeus A. Bargiello, Terry L. Dowd Sep 2016

Nmr And Structural Data For Connexin 32 And Connexin 26 N-Terminal Peptides, Yuskel Batir, Thaddeus A. Bargiello, Terry L. Dowd

Publications and Research

In this article we present 1H and 13C chemical shift assignments, secondary structural propensity data and normalized temperature coefficient data for N-terminal peptides of Connexin 26(Cx26), Cx26G12R and Cx32G12R mutants seen in syndromic deafness and Charcot Marie Tooth Disease respectively, published in “Structural Studies of N-Terminal Mutants of Connexin 26 and Connexin 32 Using 1HNMR Spectroscopy” (Y.Batir,T.A.Bargiello,T.L.Dowd, 2016)[1]. The mutation G12R affects thestructure of both Cx26 and Cx32 peptides differently. We present data from secondary structure propensity chemical shift analysis which calculates a secondary structurepropensity (SSP) score for both disordered or folded peptides and proteins using the difference between the …


A Global Edna Comparison Of Freshwater Bacterioplankton Assemblages Focusing On Large-River Floodplain Lakes Of Brazil, Michael Tessler, Mercer R. Brugler, Rob Desalle, Rebecca Hersch, Luiz Felipe M. Velho, Bianca T. Segovia, Fabio A. Lansac-Toha, Michael J. Lemke Sep 2016

A Global Edna Comparison Of Freshwater Bacterioplankton Assemblages Focusing On Large-River Floodplain Lakes Of Brazil, Michael Tessler, Mercer R. Brugler, Rob Desalle, Rebecca Hersch, Luiz Felipe M. Velho, Bianca T. Segovia, Fabio A. Lansac-Toha, Michael J. Lemke

Publications and Research

With its network of lotic and lentic habitats that shift during changes in seasonal connection, the tropical and subtropical large-river systems represent possibly the most dynamic of all aquatic environments. Pelagic water samples were collected from Brazilian floodplain lakes (total n = 58) in four floodpulsed systems (Amazon [n = 21], Araguaia [n = 14], Paraná [n = 15], and Pantanal [n = 8]) in 2011–2012 and sequenced via 454 for bacterial environmental DNA using 16S amplicons; additional abiotic field and laboratory measurements were collected for the assayed lakes.We report here a global comparison of the bacterioplankton makeup of freshwater …


A Species-Level Phylogeny Of Extant Snakes With Description Of A New Colubrid Subfamily And Genus, Alex Figueroa, Alexander D. Mckelvy, L. Lee Grismer, Charles D. Bell, Simon P. Lailvaux Sep 2016

A Species-Level Phylogeny Of Extant Snakes With Description Of A New Colubrid Subfamily And Genus, Alex Figueroa, Alexander D. Mckelvy, L. Lee Grismer, Charles D. Bell, Simon P. Lailvaux

Publications and Research

Background With over 3,500 species encompassing a diverse range of morphologies and ecologies, snakes make up 36% of squamate diversity. Despite several attempts at estimating higherlevel snake relationships and numerous assessments of generic- or species-level phylogenies, a large-scale species-level phylogeny solely focusing on snakes has not been completed. Here, we provide the largest-yet estimate of the snake tree of life using maximum likelihood on a supermatrix of 1745 taxa (1652 snake species + 7 outgroup taxa) and 9,523 base pairs from 10 loci (5 nuclear, 5 mitochondrial), including previously unsequenced genera (2) and species (61).

Results Increased taxon sampling resulted …


A Randomized Controlled Trial Of A Video-Conferencing Smoking Cessation Intervention For Korean American Women: Preliminary Findings, Sun S. Kim, Somporn Sitthisongkram, Kunsook Bernstein, Hua Fang, Won S. Choi, Douglas Ziedonis Sep 2016

A Randomized Controlled Trial Of A Video-Conferencing Smoking Cessation Intervention For Korean American Women: Preliminary Findings, Sun S. Kim, Somporn Sitthisongkram, Kunsook Bernstein, Hua Fang, Won S. Choi, Douglas Ziedonis

Publications and Research

Introduction: Korean women are reluctant to pursue in-person smoking cessation treatment due to stigma attached to women smokers and prefer treatment such as telephone and online smoking cessation programs that they can access secretively at home. However, there is some evidence that face-to-face interaction is the most helpful intervention component for them to quit smoking.

Methods: This study is a pilot clinical trial that examined the acceptability and feasibility of a videoconferencing smoking cessation intervention for Korean American women and compared its preliminary efficacy with a telephone-based intervention. Women of Korean ethnicity were recruited nationwide in the United States and …


Insights Into The Molecular Roles Of Heparan Sulfate Proteoglycans (Hspgs-Syndecans) In Autocrine And Paracrine Growth Factor Signaling In The Pathogenesis Of Hodgkin's Lymphoma, Rajendra Ghardbaran Sep 2016

Insights Into The Molecular Roles Of Heparan Sulfate Proteoglycans (Hspgs-Syndecans) In Autocrine And Paracrine Growth Factor Signaling In The Pathogenesis Of Hodgkin's Lymphoma, Rajendra Ghardbaran

Publications and Research

Syndecans (SDC, SYND) comprise a group of four structurally related type 1 transmembrane heparan sulfate proteoglycans (HSPGs) that play important roles in tumorigenic processes. SDCs exert signaling via their protein cores and their conserved transmembrane and cytoplasmic domains or by forming complexes with growth factors (GFs). In classical Hodgkin's lymphoma (cHL), a lymphoid neoplasm of predominantly B cell origin, SDC1 and SDC4 are the active SDCs, and a number of GF (vascular endothelial growth factor, fibroblast growth factor, etc.) signaling pathways have been studied. However, despite extensive pre-clinical and clinical research on SDC-mediated GF signaling in many cancer types, there …


An Anthropometric Risk Index Based On Combining Height, Weight, Waist, And Hip Measurements, Nir Y. Krakauer, Jesse C. Krakauer Sep 2016

An Anthropometric Risk Index Based On Combining Height, Weight, Waist, And Hip Measurements, Nir Y. Krakauer, Jesse C. Krakauer

Publications and Research

Body mass index (BMI) can be considered an application of a power law model to express body weight independently of height. Based on the same power law principle, we previously introduced a body shape index (ABSI) to be independent of BMI and height. Here, we develop a new hip index (HI) whose normalized value is independent of height, BMI, and ABSI. Similar to BMI, HI demonstrates a U-shaped relationship to mortality in the Third National Health and Nutrition Examination Survey (NHANES III) population. We further develop a new anthropometric risk index (ARI) by adding log hazard ratios from separate nonlinear …


Principles And Practices Fostering Inclusive Excellence: Lessons From The Howard Hughes Medical Institute’S Capstone Institutions, Patricia Marten Dibartolo, Leslie Gregg-Jolly, Deborah Gross, Cathryn A. Manduca, Ellen Iverson, David B. Cooke Iii, Gregory K. Davis, Cameron Davidson, Paul E. Hertz, Lisa Hibbard, Shubha K. Ireland, Catherine Mader, Aditi Pai, Shirley Raps, Kathleen Siwicki, Jim E. Swartz Sep 2016

Principles And Practices Fostering Inclusive Excellence: Lessons From The Howard Hughes Medical Institute’S Capstone Institutions, Patricia Marten Dibartolo, Leslie Gregg-Jolly, Deborah Gross, Cathryn A. Manduca, Ellen Iverson, David B. Cooke Iii, Gregory K. Davis, Cameron Davidson, Paul E. Hertz, Lisa Hibbard, Shubha K. Ireland, Catherine Mader, Aditi Pai, Shirley Raps, Kathleen Siwicki, Jim E. Swartz

Publications and Research

Best-practices pedagogy in science, technology, engineering, and mathematics (STEM) aims for inclusive excellence that fosters student persistence. This paper describes principles of inclusivity across 11 primarily undergraduate institutions designated as Capstone Awardees in Howard Hughes Medical Institute’s (HHMI) 2012 competition. The Capstones represent a range of institutional missions, student profiles, and geographical locations. Each successfully directed activities toward persistence of STEM students, especially those from traditionally underrepresented groups, through a set of common elements: mentoring programs to build community; research experiences to strengthen scientific skill/ identity; attention to quantitative skills; and outreach/bridge programs to broaden the student pool. This paper …


Comparative Evaluation Of Child Behavior Checklist-Derived Scales In Children Clinically Referred For Emotional And Behavioral Dysregulation, Efstathios Papachristou, Kurt Schulz, Jeffrey Newcorn, Anne-Claude V. Bedard, Jeffrey M. Halperin, Sophia Frangou Aug 2016

Comparative Evaluation Of Child Behavior Checklist-Derived Scales In Children Clinically Referred For Emotional And Behavioral Dysregulation, Efstathios Papachristou, Kurt Schulz, Jeffrey Newcorn, Anne-Claude V. Bedard, Jeffrey M. Halperin, Sophia Frangou

Publications and Research

Background: We recently developed the Child Behavior Checklist-Mania Scale (CBCL-MS), a novel and short instrument for the assessment of mania-like symptoms in children and adolescents derived from the CBCL item pool and have demonstrated its construct validity and temporal stability in a longitudinal general population sample.

Objective: The aim of this study was to evaluate the construct validity of the 19-item CBCL-MS in a clinical sample and to compare its discriminatory ability to that of the 40-item CBCL-dysregulation profile (CBCL-DP) and the 34-item CBCL-Externalizing Scale.

Methods: The study sample comprised 202 children, aged 7–12 years, diagnosed with DSM-defined attention deficit …


Alzheimer-Related Protein Apl-1 Modulates Lifespan Through Heterochronic Gene Regulation In Caenorhabditis Elegans, Collin Y. Ewald, Vanessa Marfil, Chris Li Aug 2016

Alzheimer-Related Protein Apl-1 Modulates Lifespan Through Heterochronic Gene Regulation In Caenorhabditis Elegans, Collin Y. Ewald, Vanessa Marfil, Chris Li

Publications and Research

Alzheimer’s disease (AD) is an age-associated disease. Mutations in the amyloid precursor protein (APP) may be causative or protective of AD. The presence of two functionally redundant APP-like genes (APLP1/2) has made it difficult to unravel the biological function of APP during aging. The nematode Caenorhabditis elegans contains a single APP family member, apl-1. Here, we assessed the function of APL-1 on C. elegans’ lifespan and found tissue-specific effects on lifespan by overexpression of APL-1. Overexpression of APL-1 in neurons causes lifespan reduction, whereas overexpression of APL-1 in the hypodermis causes lifespan extension by repressing the function of the heterochronic …


Sixteen Years Of Change In The Global Terrestrial Human Footprint And Implications For Biodiversity Conservation, Oscar Venter, Eric W. Sanderson, Ainhoa Magrach, James R. Allan, Jutta Beher, Kendall R. Jones, Hugh P. Possingham, William F. Laurance, Peter Wood, Balázs M. Fekete, Marc A. Levy, James E. M. Watson Aug 2016

Sixteen Years Of Change In The Global Terrestrial Human Footprint And Implications For Biodiversity Conservation, Oscar Venter, Eric W. Sanderson, Ainhoa Magrach, James R. Allan, Jutta Beher, Kendall R. Jones, Hugh P. Possingham, William F. Laurance, Peter Wood, Balázs M. Fekete, Marc A. Levy, James E. M. Watson

Publications and Research

Human pressures on the environment are changing spatially and temporally, with profound implications for the planet’s biodiversity and human economies. Here we use recently available data on infrastructure, land cover and human access into natural areas to construct a globally standardized measure of the cumulative human footprint on the terrestrial environment at 1 km2 resolution from 1993 to 2009. We note that while the human population has increased by 23% and the world economy has grown 153%, the human footprint has increased by just 9%. Still, 75% the planet’s land surface is experiencing measurable human pressures. Moreover, pressures are perversely …


Data Descriptor: Global Terrestrial Human Footprint Maps For 1993 And 2009, Oscar Venter, Eric W. Sanderson, Ainhoa Magrach, James R. Allan, Jutta Beher, Kendall R. Jones, Hugh P. Possingham, William F. Laurance, Peter Wood, Balázs M. Fekete, Marc A. Levy, James E. M. Watson Aug 2016

Data Descriptor: Global Terrestrial Human Footprint Maps For 1993 And 2009, Oscar Venter, Eric W. Sanderson, Ainhoa Magrach, James R. Allan, Jutta Beher, Kendall R. Jones, Hugh P. Possingham, William F. Laurance, Peter Wood, Balázs M. Fekete, Marc A. Levy, James E. M. Watson

Publications and Research

Remotely-sensed and bottom-up survey information were compiled on eight variables measuring the direct and indirect human pressures on the environment globally in 1993 and 2009. This represents not only the most current information of its type, but also the first temporally-consistent set of Human Footprint maps. Data on human pressures were acquired or developed for: 1) built environments, 2) population density, 3) electric infrastructure, 4) crop lands, 5) pasture lands, 6) roads, 7) railways, and 8) navigable waterways. Pressures were then overlaid to create the standardized Human Footprint maps for all non-Antarctic land areas. A validation analysis using scored pressures …


Polycations. 23. Antimicrobial Surfaces For Prevention Of Pathogen Transmission, Robert Engel, Karin Melkonian, Jay Ho, Jaime Lee Iolani Rizzo Aug 2016

Polycations. 23. Antimicrobial Surfaces For Prevention Of Pathogen Transmission, Robert Engel, Karin Melkonian, Jay Ho, Jaime Lee Iolani Rizzo

Publications and Research

The continued evolution of bacterial and fungal species poses a significant difficulty for the treatment of disease of microbial origin. Given this situation, the prevention of transmission of such microbial diseases becomes of increasing importance. Efforts of this laboratory have been directed toward the destruction of microbial species on environmental surfaces as a prophylaxis toward infection, and we herein report on the efficacy of a system that demonstrates activity against both Gram-positive and Gram-negative bacteria, as well as fungi. We report specifically herein on the use of fabric materials so activated for the destruction of these microbial species, useful for …


Anomaly Detection In Host Signaling Pathways For The Early Prognosis Of Acute Infection, Kun Wang, Stanley Langevin, Corey S. O'Hern, Mark D. Shattuck, Serenity Ogle, Adriana Forero, Juliet Morrison, Richard Slayden, Michael G. Katze, Michael Kirby Aug 2016

Anomaly Detection In Host Signaling Pathways For The Early Prognosis Of Acute Infection, Kun Wang, Stanley Langevin, Corey S. O'Hern, Mark D. Shattuck, Serenity Ogle, Adriana Forero, Juliet Morrison, Richard Slayden, Michael G. Katze, Michael Kirby

Publications and Research

Clinical diagnosis of acute infectious diseases during the early stages of infection is critical to administering the appropriate treatment to improve the disease outcome. We present a data driven analysis of the human cellular response to respiratory viruses including influenza, respiratory syncytia virus, and human rhinovirus, and compared this with the response to the bacterial endotoxin, Lipopolysaccharides (LPS). Using an anomaly detection framework we identified pathways that clearly distinguish between asymptomatic and symptomatic patients infected with the four different respiratory viruses and that accurately diagnosed patients exposed to a bacterial infection. Connectivity pathway analysis comparing the viral and bacterial diagnostic …