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Estrogen-Activated Mdm2 Disrupts Mammary Tissue Architecture Through A P53-Independent Pathway, Nandini Kundu, Angelika Brekman, Jun Yeob Kim, Gu Xiano, Chong Gao, Jill Bargonetti

Publications and Research

The Cancer Genome Atlas (TCGA) data indicate that high MDM2 expression correlates with all subtypes of breast cancer. Overexpression of MDM2 drives breast oncogenesis in the presence of wild-type or mutant p53 (mtp53). Importantly, estrogen-receptor positive (ER+) breast cancers overexpress MDM2 and estrogen mediates this expression. We previously demonstrated that this estrogen-MDM2 axis activates the proliferation of breast cancer cell lines T47D (mtp53 L194F) and MCF7 (wild-type p53) in a manner independent of increased degradation of wildtype p53 (ie, p53-independently). Herein we present data supporting the role of the estrogen-MDM2 axis in regulating cell proliferation and mammary tissue architecture of …

Modulation Of Estrogen Related Receptor Alpha Activity By The Kinesin Kif17, Am Pramodh Bandara Seneviratne, Zeynep Turan, Aurelie Hermant, Patrick Lecine, William O. Smith, Jean-Paul Borg, Fanny Jaulin, Geri Kreitzer

Publications and Research

Estrogen-related receptor alpha (ERR1) is an orphan nuclear receptor that can bind transcriptional co-activators constitutively. ERR1 expression correlates with poor patient outcomes in breast cancer, heightening interest in this nuclear receptor as a therapeutic target. Because ERR1 has no known regulatory ligand, a major challenge in targeting its activity is to find cellular or synthetic modulators of its function. We identified an interaction between ERR1 and KIF17, a kinesin-2 family microtubule motor, in a yeast-2-hybrid screen. We confirmed the interaction using in vitro biochemical assays and determined that binding is mediated by the ERR1 ligand-binding/AF2 domain and the KIF17 C-terminal …

Effects Of Leucine Supplementation And Resistance Training On Myopathy Of Diabetic Rats, Carlos Eduardo C. Martins, Vanessa B. De S. Lima, Brad J. Schoenfeld, Julio Tirapegui

Publications and Research

Leucine supplementation and resistance training positively influence the protein translation process and the cell signaling mTOR (mammalian target of rapamycin) pathway that regulates muscle protein balance and muscle remodeling, and thus may be therapeutic to diabetic myopathy. However, the effect of a combined intervention has not been well studied. Forty male Wistar rats were divided into five groups, control (C), diabetic control (D), diabetic + trained (DT), diabetic + L-leucine (DL), diabetic + L-leucine + trained (DLT). The supplementation of 5% leucine in chow, and resistance training were conducted for 8 weeks postweaning of rats. The extensor digitorum longus was …

Cancer Cell Spheroids Are A Better Screen For The Photodynamic Efficiency Of Glycosylated Photosensitizers, Patrícia M. R. Pereira, Naxhije Berisha, N.V.S. Dinesh K. Bhupathiraju, Rosa Fernandes, João P.C. Tomé, Charles Michael Drain

Publications and Research

Environmental remediation requires ion-selective polymers that operate under a wide range of solution conditions. In one example, removal of trivalent and divalent metal ions from waste streams resulting from mining operations before they enter the environment requires treatment at acidic pH. The monoethyl ester phosphate ligands developed in this report operate from acidic solutions. They have been prepared on polystyrene-bound ethylene glycol, glycerol, and pentaerythritol, and it is found that intraligand hydrogen bonding affects their metal ion affinities. The affinity for a set of trivalent (Fe(III), Al(III), La(III), and Lu(III)) and divalent (Pb(II), Cd(II), Cu(II), and Zn(II)) ions is greater …

Knowledge Systems And The Colonial Legacies In African Science Education, Edward Lehner, John R. Ziegler

Publications and Research

This review surveys Femi Otulaja and Meshach Ogunniyi’s (2015) Handbook of Research in Science Education in Sub-Saharan Africa, noting the significance of the theoretically rich content and how this book contributes to the field of education as well as to the humanities more broadly. The volume usefully outlines the ways in which science education and scholarship in sub-Saharan Africa continue to be impacted by the region’s colonial history. Several of the chapters also enumerate proposals for teaching and learning science and strengthening academic exchange. Concerns that recur across many of the chapters include inadequate implementation of reforms; a lack …

Mutant Tdp-43 Does Not Impair Mitochondrial Bioenergetics In Vitro And In Viv, Hibiki Kawamata, Pablo Peixoto, Csaba Konrad, Gloria Palomo, Kirsten Bredvik, Meri Gerges, Federica Valsecchi, Leonard Petrucelli, John M. Ravits, Anatoly Starkov, Giovanni Manfredi

Publications and Research

Background: Mitochondrial dysfunction has been linked to the pathogenesis of amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD). Functional studies of mitochondrial bioenergetics have focused mostly on superoxide dismutase 1 (SOD1) mutants, and showed that mutant human SOD1 impairs mitochondrial oxidative phosphorylation, calcium homeostasis, and dynamics. However, recent reports have indicated that alterations in transactivation response element DNA-binding protein 43 (TDP-43) can also lead to defects of mitochondrial morphology and dynamics. Furthermore, it was proposed that TDP-43 mutations cause oxidative phosphorylation impairment associated with respiratory chain defects and that these effects were caused by mitochondrial localization of the mutant …

Teufel Thinks That We Need Philosophers More Than Ever., Aldemaro Romero Jr.

Publications and Research

Most people don’t know what a philosopher does, but philosophers take their profession seriously, no matter what first drew them into it. “I tried to decide what to do, and I figured one way to know how to become an artist would be to find out what philosophy is and also what philosophy is not in order to then be able to paint,” says Dr. Thomas Teufel, who initially wanted to become an artist.

“The word philosophy comes from the Greek ‘filo-sofía.’ Sofía means ‘wisdom,’ filo means ‘lover of.’ Thus, a philosopher is a lover of wisdom—as the Greeks would …

Toward Measuring Network Aesthetics Based On Symmetry, Zengqiang Chen, Matthias Dehmer, Frank Emmert-Streib, Abbe Mowshowitz, Yongtang Shi

Publications and Research

In this exploratory paper, we discuss quantitative graph-theoretical measures of network aesthetics. Related work in this area has typically focused on geometrical features (e.g., line crossings or edge bendiness) of drawings or visual representations of graphs which purportedly affect an observer’s perception. Here we take a very different approach, abandoning reliance on geometrical properties, and apply information-theoretic measures to abstract graphs and networks directly (rather than to their visual representaions) as a means of capturing classical appreciation of structural symmetry. Examples are used solely to motivate the approach to measurement, and to elucidate our symmetry-based mathematical theory of network aesthetics.

Comparing Tensorflow Deep Learning Performance Using Cpus, Gpus, Local Pcs And Cloud, John Lawrence, Jonas Malmsten, Andrey Rybka, Daniel A. Sabol, Ken Triplin

Publications and Research

Deep learning is a very computational intensive task. Traditionally GPUs have been used to speed-up computations by several orders of magnitude. TensorFlow is a deep learning framework designed to improve performance further by running on multiple nodes in a distributed system. While TensorFlow has only been available for a little over a year, it has quickly become the most popular open source machine learning project on GitHub. The open source version of TensorFlow was originally only capable of running on a single node while Google’s proprietary version only was capable of leveraging distributed systems. This has now changed. In this …

A Novel Technique For Designing High Power Semiconductor Optical Amplifier (Soa)-Based Tunable Fiber Compound-Ring Lasers Using Low Power Optical Components, Muhammad A. Ummy, Simeon Bikorimana, Roger Dorsinville

Publications and Research

A simple, stable and inexpensive dual-output port widely tunable semiconductor optical amplifier (SOA)-based fiber compound-ring laser structure is demonstrated. This unique nested ring cavity enables high optical power to split into different branches where amplification and wavelength selection are achieved by using low-power SOAs and a tunable filter. Furthermore, two Sagnac loop mirrors, which are spliced at the two ends of the compound-ring cavity not only serve as variable reflectors but also channel the optical energy back to the same port without using any high optical power combiner. We propose and discuss how the demonstrated fiber compound-ring laser structure can …

Protocols And Pitfalls In Obtaining Fatty Acid-Binding Proteins For Biophysical Studies Of Ligand-Protein And Protein-Protein Interactions, Qian Wang, Samar Rizk, Cédric Bernard, May Poh Lai, David Kam, Judith Storch, Ruth E. Stark

Publications and Research

Adipocyte fatty acid-binding protein (AFABP: FABP4) is a member of the intracellular lipid-binding protein family that is thought to target long-chain fatty acids to nuclear receptors such as peroxisome proliferatoractivated receptor gamma (PPARγ), which in turn plays roles in insulin resistance and obesity. A molecular understanding of AFABP function requires robust isolation of the protein in liganded and free forms as well as characterization of its oligomerization state(s) under physiological conditions. We report development of a protocol to optimize the production of members of this protein family in pure form, including removal of their bound lipids by mixing with hydrophobically …

From Sexless To Sexy: Why It Is Time For Human Genetics To Consider And Report Analyses Of Sex, Matthew S. Powers, Phillip H. Smith, Sherry A. Mckee, Marissa A. Ehringer

Publications and Research

Science has come a long way with regard to the consideration of sex differences in clinical and preclinical research, but one field remains behind the curve: human statistical genetics. The goal of this commentary is to raise awareness and discussion about how to best consider and evaluate possible sex effects in the context of large-scale human genetic studies. Over the course of this commentary, we reinforce the importance of interpreting genetic results in the context of biological sex, establish evidence that sex differences are not being considered in human statistical genetics, and discuss how best to conduct and report such …

Concentrations And Size Distributions Of Bacteria-Containing Particles Over Oceans From China To The Arctic Ocean, Ming Li, Xiawei Yu, Hui Kang, Zhouqing Xie, Pengfei Zhang

Publications and Research

During the third China Arctic Research Expedition (July–September 2008), size-resolved measurements of bacteria-containing particles (BCPs) in the marine boundary layer (MBL) air were conducted during a cruise through the East China Sea, the Yellow Sea, the Japan Sea, the Okhotsk Sea, the Bering Sea, the Chukchi Sea, and the Arctic Ocean. The concentrations of total airborne BCPs (TBCPs), non-salt tolerant airborne BCPs (NSBCPs), and salt tolerant airborne BCPs (SBCPs) varied from 29 to 955 CFU m − 3 (CFU = Colony Forming Unit), 16 to 919 CFU m − 3 , and 4 to 276 CFU m − 3 , …

Stability Of Synthetic Cathinones In Oral Fluid Samples, Briana Miller, Jiyoung Kim, Marta Concheiro

Publications and Research

Synthetic cathinones are new stimulant drugs derived from cathinone that have been sold as “legal highs” worldwide. These compounds can elicit powerful effects such as delusions, hallucinations as well as other potentially dangerous behavior. New analogs with varying effects and potencies are constantly introduced in the market to evade legislation, and they are not detected by routine screening and confirmation methods. Oral fluid is an alternative matrix of increasing interest in forensic toxicology. Its collection is non-invasive and easily supervised, and positive drug findings typically reflect recent drug exposure. The focus of this research was to develop a method for …

A Global Study Of Gpp Focusing On Light-Use Efficiency In A Random Forest Regression Model, Suhua Wei, Chuixiang Yi, Wei Fang, George Hendrey

Publications and Research

Light-use efficiency (LUE) is at the core of mechanistic modeling of global gross primary production (GPP). However, most LUE estimates in global models are satellite based and coarsely measured with emphasis on environmental variables. Others are from eddy covariance towers with much greater spatial and temporal data quality and emphasis on mechanistic processes, but in a limited number of sites. In this study, we conducted a comprehensive global study of tower-based LUE from 237 FLUXNET towers, and scaled up LUEs from in situ tower level to global biome level. We integrated the tower-based LUE estimates with key environmental and biological …

L-2-Hydroxyglutarate Production Arises From Non-Canonical Enzyme Function At Acidic Ph, Andrew M. Intlekofer, Bo Wang, Hui Liu, Hardik Shah, Carlos Carmona-Fontanie, Ariën S. Rustenburg, Salah Salah, Marilyn R. Gunner, John D. Chodera, Justin R. Cross, Craig B. Thompson

Publications and Research

The metabolite 2-hydroxyglutarate (2HG) can be produced as either a D(R)- or L(S)- enantiomer, each of which inhibits alpha-ketoglutarate (αKG)-dependent enzymes involved in diverse biologic processes. Oncogenic mutations in isocitrate dehydrogenase produce D-2HG, which causes a pathologic blockade in cell differentiation. On the other hand, oxygen limitation leads to accumulation of L-2HG, which can facilitate physiologic adaptation to hypoxic stress in both normal and malignant cells. Here we demonstrate that purified lactate dehydrogenase (LDH) and malate dehydrogenase (MDH) catalyze stereospecific production of L-2HG via ‘promiscuous’ reduction of the alternative substrate αKG. Acidic pH enhances production of L-2HG by promoting a …

Assessment Of Marine Weather Forecasts Over The Indian Sector Of Southern Ocean, Anitha Gera, D K. Mahapatra, Kuldeep Sharma, Satya Prakash, A. K. Mitra, G. R. Iyengar, E. N. Rajagopal, N. Anil Kumar

Publications and Research

The Southern Ocean (SO) is one of the important regions where significant processes and feedbacks of the Earth's climate take place. Expeditions to the SO provide useful data for improving global weather/climate simulations and understanding many processes. Some of the uncertainties in these weather/climate models arise during the first few days of simulation/forecast and do not grow much further. NCMRWF issued real-time five day weather forecasts of mean sea level pressure, surface winds, winds at 500 hPa & 850 hPa and rainfall, daily to NCAOR to provide guidance for their expedition to Indian sector of SO during the austral summer …

Rseqrep: Rna-Seq Reports, An Open-Source Cloud-Enabled Framework For Reproducible Rna-Seq Data Processing, Analysis, And Result Reporting, Travis L. Jensen, Michael Frasketi, Kevin Conway, Leigh Villarroel, Heather Hill, Konstantinos Krampis, Johannes B. Goll

Publications and Research

RNA-Seq is increasingly being used to measure human RNA expression on a genome-wide scale. Expression profiles can be interrogated to identify and functionally characterize treatment-responsive genes. Ultimately, such controlled studies promise to reveal insights into molecular mechanisms of treatment effects, identify biomarkers, and realize personalized medicine. RNA-Seq Reports (RSEQREP) is a new open-source cloud-enabled framework that allows users to execute start-to-end gene-level RNA-Seq analysis on a preconfigured RSEQREP Amazon Virtual Machine Image (AMI) hosted by AWS or on their own Ubuntu Linux machine. The framework works with unstranded, stranded, and paired-end sequence FASTQ files stored locally, on Amazon Simple Storage …

Data Descriptor: A Resource For Assessing Information Processing In The Developing Brain Using Eeg And Eye Tracking, Nicolas Langer, Erica J. Ho, Lindsay M. Alexander, Helen Y. Xu, Renee K. Jozanovic, Simon Henin, Agustin Petroni, Samantha Cohen, Enitan T. Marcelle, Lucas C. Parra, Michael P. Milham, Simon P. Kelly

Publications and Research

We present a dataset combining electrophysiology and eye tracking intended as a resource for the investigation of information processing in the developing brain. The dataset includes high-density taskbased and task-free EEG, eye tracking, and cognitive and behavioral data collected from 126 individuals (ages: 6–44). The task battery spans both the simple/complex and passive/active dimensions to cover a range of approaches prevalent in modern cognitive neuroscience. The active task paradigms facilitate principled deconstruction of core components of task performance in the developing brain, whereas the passive paradigms permit the examination of intrinsic functional network activity during varying amounts of external stimulation. …

Ultraviolet Radiation Reduces Desmosine Cross-Links In Elastin, Basant Dhital, Philip Durlik, Pratikkumar Rathod, Farhana Gul-E-Noor, Zhixiao Wang, Cheng Sun, Emmanuel J. Chang, Boris Itin, Gregory S. Boutis

Publications and Research

Elastic fibers, a major component of the extracellular matrix of the skin, are often exposed to ultraviolet (UV) radiation throughout mammalian life. We report on an in vitro study of the alterations in bovine nuchal ligament elastic fibers resulting from continuous UV-A exposure by the use of transmission electron microscopy (TEM), histology, mass spectrometry, and solid state 13C NMR methodologies. TEM images reveal distinct cracks in elastic fibers as a result of UV-A irradiation and histological measurements show a disruption in the regular array of elastic fibers present in unirradiated samples; elastic fibers appear shorter, highly fragmented, and thinner after …

Demographic Transition And The Dynamics Of Measles In Six Provinces In China: A Modeling Study, Sheng Li, Chao Ma, Lixin Hao, Qiru Su, Zhijie An, Fubao Ma, Shuyun Xie, Aiqiang Xu, Yangyang Zhang, Zhengrong Ding, Hui Li, Lisa Cairns, Huaqing Wang, Huiming Luo, Ning Wang, Li Li, Matthew J. Ferrari

Publications and Research

Background Industrialization and demographic transition generate nonstationary dynamics in human populations that can affect the transmission and persistence of infectious diseases. Decades of increasing vaccination and development have led to dramatic declines in the global burden of measles, but the virus remains persistent in much of the world. Here we show that a combination of demographic transition, as a result of declining birth rates, and reduced measles prevalence, due to improved vaccination, has shifted the age distribution of susceptibility to measles throughout China.

Methods and findings We fit a novel time-varying catalytic model to three decades of age-specific measles case …

A Drosophila Model To Examine Collective Migration During Retinogenesis, Caroline Pena, Stephanie Zhang, Mildred Kamara, Tadmiri Venkatesh, Maribel Vazquez

Publications and Research

Retinal dysfunction is often caused by aberrant neural cell migration during development. In this study, we observed the migration of neural cells of the Drosophila melanogaster after marking cells of the 3rd instar larvae with the GAL4-UAS expression system when exposed to a concentration gradient of FGF-8 through the use of a microfluidic device. The glial and neuronal cell ratio in the developing brain was determined through immunofluorescent staining and observation. In future studies, a microfluidic device that mimics the developing Drosophila brain and retina will be designed in order to better understand the biological factors that affect the migration …

Wsq: At Sea Editors' Note, Cynthia Chris, Matt Brim

Publications and Research

This Editor's Note introduces the WSQ issue "At Sea" co-edited by Terri Gordon-Zolov and Amy Sodaro and Shefali Chandra, which explores the sea as a gendered and radicalized site of violence.

Faculty Perception Of Information Literacy At Queensborough Community College, Leslie Ward, Miseon Kim

Publications and Research

This study examines how faculty perceived information literacy classes provided by Queensborough Community College. A survey was distributed in the spring of 2017 via faculty e-mail. The survey focused on the faculty’s department affiliation, usage of information literacy (IL) instruction, and how they value the IL instruction. The results revealed that the highest proportion of faculty members who brought their students to the library and found it the most useful were the English and the Speech department, while faculty in the STEM fields were least likely to utilize the library instruction because they found it was irrelevant to their courses.

Transgender Rights Without A Theory Of Gender?, Paisley Currah

Publications and Research

Why do courts and legislatures ban discrimination based on gender, and increasingly, gender identity, but exempt grooming and dress codes from the protections these laws offer? I argue that culpability for the courts’ and legislatures’ defense of hegemonic gender norms cannot be assigned to transgender rights movement, as some have done. These norms do not regulate only transgender people, they are not minoritizing—and neither should be the politics that seeks to transform them. The thought experiment of this review essay was to sever the analysis of particular political strategies from various assumptions about what gender really is. Agreement on the …

Sibling Affection And Domestic Heterosexuality In Lodovick Carlell’S The Deserving Favorite, Mario Digangi

Publications and Research

Lodowick Carlell’s play The Deserving Favorite (1629) deploys the ideological strategy of using erotic “likeness” to validate marital unions as consensual and erotically compatible. In an era before the normalization of heterosexuality, the play suggests that sexually passionate marital relations earn legitimacy to the degree that they emulate the affectionate relations between women and between siblings. Although eroticized female friendship approaches the ideal of a consensual and sensual partnership, intimate relations between women seem best to thrive in a separatist environment removed from courtly social and economic exchanges, including the marital negotiations crucial to cementing dynastic and political alliances. Brothers …

Zooarchaeology Of The Scandinavian Settlements In Iceland And Greenland: Diverging Pathways, Thomas Mcgovern, Konrad Smairowski, George Hambrecht, Seth Brewington, Ramona Harrison, Megan Hicks, Frank J. Feeley, Brenda Prehal, James Woollett

Publications and Research

The Scandinavian Viking Age and Medieval settlements of Iceland and Greenland have been subject to zooarchaeological research for over a century, and have come to represent two classic cases of survival and collapse in the literature of long-term human ecodynamics. The work of the past two decades by multiple projects coordinated through the North Atlantic Biocultural Organization (NABO) cooperative and by collaborating scholars has dramatically increased the available zooarchaeological evidence for economic organization of these two communities, their initial adaptation to different natural and social contexts, and their reaction to Late Medieval economic and climate change. This summary paper provides …

Medieval Iceland, Greenland, And The New Human Condition: A Case Study In Integrated Environmental Humanities, Steven Hartman, A.E.J. Ogilvie, Jón Haukur Ingimundarson, A.J. Dugmore, George Hambrecht, Thomas Mcgovern

Publications and Research

This paper contributes to recent studies exploring the longue durée of human impacts on island landscapes, the impacts of climate and other environmental changes on human communities, and the interaction of human societies and their environments at different spatial and temporal scales. In particular, the paper addresses Iceland during the medieval period (with a secondary, comparative focus on Norse Greenland) and discusses episodes where environmental and climatic changes have appeared to cross key thresholds for agricultural productivity. The paper draws upon international, interdisciplinary research in the North Atlantic region led by the North Atlantic Biocultural Organization (NABO) and the Nordic …

Unique Synergistic Formulation Of Curcumin, Epicatechin Gallate And Resveratrol, Tricurin, Suppresses Hpv E6, Eliminates Hpv+ Cancer Cells, And Inhibits Tumor Progression, Sumit Mukherjee, Priya Ranjan Debata, Rahman Hussaini, Kaushiki Chatterjee, Juliet N. E. Baidoo, Samay Sampat, Anita Szerszen, Joseph P. Navarra, Jimmie Fata, Elena Severinova, Probal Banerjee, Mario R. Castellanos

Publications and Research

Curcumin (from curry) (C) is highly potent against cervical cancer cells (CCC), but poor bioavailability has limited its clinical use. Similar natural polyphenols resveratrol (from grapes) (R), and epicatechin gallate (from green tea) (E) also display activity against CCC. By treating CCC (HeLa) with C, E, or R, or combinations of these compounds, we computed combination indices and observed a strong synergism among C, E, and R at the unique molar ratio 4:1:12.5. This combination, named as TriCurin, rapidly down regulated HPV18 E6 and NF-kB expression while concomitantly inducing the tumor suppressor protein p53 in HeLa cells. In the mouse …

Whose Expertise Is It? Evidence For Autistic Adults As Critical Autism Experts, Kristen Gillespie-Lynch, Steven K. Kapp, Patricia J. Brooks, Jonathan Pickens, Ben Schwartzman

Publications and Research

Autistic and non-autistic adults’ agreement with scientific knowledge about autism, how they define autism, and their endorsement of stigmatizing conceptions of autism has not previously been examined. Using an online survey, we assessed autism knowledge and stigma among 636 adults with varied relationships to autism, including autistic people and nuclear family members. Autistic participants exhibited more scientifically based knowledge than others. They were more likely to describe autism experientially or as a neutral difference, and more often opposed the medical model. Autistic participants and family members reported lower stigma. Greater endorsement of the importance of normalizing autistic people was associated …