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Development And Validation Of The Microbiology For Health Sciences Concept Inventory, Heather M. Seitz, Rachel E. A. Horak, Megan W. Howard, Lucy W. Kluckhohn Jones, Theodore Muth, Christopher Parker, Andrea Pratt Rediske, Maureen M. Whitehurst Oct 2017

Development And Validation Of The Microbiology For Health Sciences Concept Inventory, Heather M. Seitz, Rachel E. A. Horak, Megan W. Howard, Lucy W. Kluckhohn Jones, Theodore Muth, Christopher Parker, Andrea Pratt Rediske, Maureen M. Whitehurst

Publications and Research

Identifying misconceptions in student learning is a valuable practice for evaluating student learning gains and directing educational interventions. By accurately identifying students’ knowledge and misconceptions about microbiology concepts, instructors can design effective classroom practices centered on student understanding. Following the development of ASM’s Curriculum Guidelines in 2012, we developed a concept inventory, the Microbiology for Health Sciences Concept Inventory (MHSCI), that measures learning gains and identifies student misconceptions in health sciences microbiology classrooms. The 23-question MHSCI was delivered to a wide variety of students at multiple institution types. Psychometric analysis identified that the MHSCI instrument is both discriminatory and reliable …


Defaultification Refactoring: A Tool For Automatically Converting Java Methods To Default, Raffi Khatchadourian, Hidehiko Masuhara Oct 2017

Defaultification Refactoring: A Tool For Automatically Converting Java Methods To Default, Raffi Khatchadourian, Hidehiko Masuhara

Publications and Research

Enabling interfaces to declare (instance) method implementations, Java 8 default methods can be used as a substitute for the ubiquitous skeletal implementation software design pattern. Performing this transformation on legacy software manually, though, may be non-trivial. The refactoring requires analyzing complex type hierarchies, resolving multiple implementation inheritance issues, reconciling differences between class and interface methods, and analyzing tie-breakers (dispatch precedence) with overriding class methods. All of this is necessary to preserve type-correctness and confirm semantics preservation. We demonstrate an automated refactoring tool called Migrate Skeletal Implementation to Interface for transforming legacy Java code to use the new default construct. The …


Gene Coexpression Network Analysis Of Fruit Transcriptomes Uncovers A Possible Mechanistically Distinct Class Of Sugar/Acid Ratio-Associated Genes In Sweet Orange, Liang Qiao, Minghao Cao, Jian Zheng, Yihong Zhao, Zhi-Liang Zheng Oct 2017

Gene Coexpression Network Analysis Of Fruit Transcriptomes Uncovers A Possible Mechanistically Distinct Class Of Sugar/Acid Ratio-Associated Genes In Sweet Orange, Liang Qiao, Minghao Cao, Jian Zheng, Yihong Zhao, Zhi-Liang Zheng

Publications and Research

Background: The ratio of sugars to organic acids, two of the major metabolites in fleshy fruits, has been considered the most important contributor to fruit sweetness. Although accumulation of sugars and acids have been extensively studied, whether plants evolve a mechanism to maintain, sense or respond to the fruit sugar/acid ratio remains a mystery. In a prior study, we used an integrated systems biology tool to identify a group of 39 acid-associated genes from the fruit transcriptomes in four sweet orange varieties (Citrus sinensis L. Osbeck) with varying fruit acidity, Succari (acidless), Bingtang (low acid), and Newhall and Xinhui (normal …


Synthesis, Crystal Structure, And Photoluminescent Properties Of 3,3′,4,4′-Tetraethyl-5,5′-Divinyl-2,2′-Bipyrrole Derivatives, Toru Okawara, Reo Kawano, Hiroya Morita, Alan Finkelstein, Renjiro Toyofuku, Kanako Matsumoto, Kenji Takehara, Toshihiko Nagamura, Seiji Iwasa, Sanjai Kumar Oct 2017

Synthesis, Crystal Structure, And Photoluminescent Properties Of 3,3′,4,4′-Tetraethyl-5,5′-Divinyl-2,2′-Bipyrrole Derivatives, Toru Okawara, Reo Kawano, Hiroya Morita, Alan Finkelstein, Renjiro Toyofuku, Kanako Matsumoto, Kenji Takehara, Toshihiko Nagamura, Seiji Iwasa, Sanjai Kumar

Publications and Research

Photoluminescent divinylbipyrroles were synthesized from 3,3′,4,4′-tetraetyl-2,2′-bipyrrole-5,5′-dicarboxaldehyde and activated methylene compounds via aldol condensation.For mechanistic clarity, molecular structures of Meldrum’s acid- and 1,3-dimethylbarbituricacid-derived divinylbipyrroles were determined by single-crystal X-ray diffraction. Photoluminescentproperties of the synthesized divinylbipyrroles in dichloromethane were found to be dependent onthe presence of electron withdrawing groups at the vinylic terminal. The divinylbipyrroles derivedfrom malononitrile, Meldrum’s acid, and 1,3-dimethylbarbituric acid showed fluorescent peaks at553, 576, and 602 nm respectively. Computational studies indicated that the alkyl substituents on thebipyrrole 3 and 3′positions increased energy level of the highest occupied molecular orbital (HOMO)compared to the unsubstituted derivatives and provided rationale for the …


Ecosystem Drought Response Timescales From Thermal Emission Versus Shortwave Remote Sensing, Erika Andujar, Nir Krakauer, Chuixiang Yi, Felix Kogan Oct 2017

Ecosystem Drought Response Timescales From Thermal Emission Versus Shortwave Remote Sensing, Erika Andujar, Nir Krakauer, Chuixiang Yi, Felix Kogan

Publications and Research

Remote sensing is used for monitoring the impacts of meteorological drought on ecosystems, but few large-scale comparisons of the response timescale to drought of different vegetation remote sensing products are available. We correlated vegetation health products derived frompolar-orbiting radiometer observations with a meteorological drought indicator available at different aggregation timescales, the Standardized Precipitation Evapotranspiration Index (SPEI), to evaluate responses averaged globally and over latitude and biome.The remote sensing products are Vegetation Condition Index (VCI), which uses normalized difference vegetation index (NDVI) to identify plant stress, Temperature Condition Index (TCI), based on thermal emission as a measure of surface temperature, and …


Experiential Learning Opportunity (Elo) And Utilization Of Field-And-Data- Based Information Obtained Through The Infusion Of Technology: Highlights On Nasa Stem And Earth Science Curricula, Nazrul I. Khandaker, Matthew Khargie, Shuayb Siddiqu, Sol De Leon, Katina Singh, Newrence Wills, Krishna Mahibar Oct 2017

Experiential Learning Opportunity (Elo) And Utilization Of Field-And-Data- Based Information Obtained Through The Infusion Of Technology: Highlights On Nasa Stem And Earth Science Curricula, Nazrul I. Khandaker, Matthew Khargie, Shuayb Siddiqu, Sol De Leon, Katina Singh, Newrence Wills, Krishna Mahibar

Publications and Research

There is a greater emphasis on hands-on involvement and critical thinking skills in the geosciences and other STEM fields to inspire and engage K- 16 students to value scientific content and enable them to discover the well-documented nature of the fundamental scientific principles needed to explain various earth science and other STEM-related core phenomena. NASA MAA curricula are ideal for engaging K1-16 students in this context, since grade-specific lesson plans open-up a plethora of pedagogically sound and relevant earth science activities. These include earth’s materials and properties, meteorites, robotics, hot air balloon, flight simulation, star gazing, material science, crystal growth, …


Raritan Formation (Upper Cretaceous), Long Island, New York: Sedimentological And Geochemical Assessment, Nazrul I. Khandaker, Arif Sikder, Stanley Schleifer, Xin-Chen Liu, Carlos E. Castano Londano, Joseph B. Mcgee Turner Oct 2017

Raritan Formation (Upper Cretaceous), Long Island, New York: Sedimentological And Geochemical Assessment, Nazrul I. Khandaker, Arif Sikder, Stanley Schleifer, Xin-Chen Liu, Carlos E. Castano Londano, Joseph B. Mcgee Turner

Publications and Research

The lithology of the Upper Cretaceous Raritan Formation (RF) consists of two members: an upper clay member (Raritan clay) and a lower unit, the Lloyd Sand Member. RF is unconformably overlain by upper Pleistocene glacial deposits. The RF consists of stratified white, light- to dark-gray, and red beds and lenses of clay, silt, and sand; lignite and pyrite are common. Variegated, thin to thickly-bedded Lloyd sandstone (LS) is considered to be one of the extensive regional aquifers in Long Island and interpreted to be nearshore, fluvio-deltaic deposit. Proximity to fluvial axes and active deltaic lobes plays an important role in …


Further Study Of Garnet Xenocrysts In New York City Migmatites, Stanley Schleifer, Nazrul I. Khandaker Oct 2017

Further Study Of Garnet Xenocrysts In New York City Migmatites, Stanley Schleifer, Nazrul I. Khandaker

Publications and Research

The authors have previously published an article at the 2004 Geological Society of America Annual Meeting, Petrogenetic Significance of Garnets in the Bedrock of New York City, in which they suggested that the garnet xenocrysts observed in the quartzofeldspathic zones of the migmatites, so frequently seen both at the surface, and below the surface pursuant to the construction of the Manhattan portion of New york City Water Tunnel #3, were a refractory residue of the anatectic melting of the immediately surrounding schistose bedrock. Although the relatively high melting point temperature of garnet compared to other minerals in the surrounding …


Nurse Perception Of Care Of Hospitalized Older Adults – A Comparative Study Between Northern And Central Regions Of Portugal, João Paulo De Almeida Tavares, Alcione Leite Da Silva, Pedro Sá-Couto, Marie Boltz, Elizabeth Capezuti Oct 2017

Nurse Perception Of Care Of Hospitalized Older Adults – A Comparative Study Between Northern And Central Regions Of Portugal, João Paulo De Almeida Tavares, Alcione Leite Da Silva, Pedro Sá-Couto, Marie Boltz, Elizabeth Capezuti

Publications and Research

Objective: to analyze the relationship between the perceptions of nurses about geriatric care (GC) environment and geriatric nurses’ knowledge and attitudes according to unit type considering the northern and central regions of Portugal.

Method: a cross-sectional study was developed among 1068 Portuguese’s nurses in five hospitals. The instrument was Geriatric Institutional Assessment Profile – Portuguese version. The independent samples t-test was when the assumption of normality was verified, otherwise, the Mann-Whitney U test was used. The level of significance was 5%.

Results: the profile of perceptions of GC showed a relatively homogeneous pattern (no statistically significant results were found). For …


The Pulse Vision & Change Rubrics, Version 1.0: A Valid And Equitable Tool To Measure Transformation Of Life Sciences Departments At All Institution Types, Loretta Brancaccio-Taras, Pamela Pape-Lindstrom, Marcy Peteroy-Kelly, Karen Aguirre, Judy Awong-Taylor, Teri Balser, Michael J. Cahill, Regina F. Frey, Thomas Jack, Michael Kelrick, Kate Marley, Kathryn G. Miller, Marcy Osgood, Sandra Romano, J. Akif Uzman, Jiuqing Zhao Oct 2017

The Pulse Vision & Change Rubrics, Version 1.0: A Valid And Equitable Tool To Measure Transformation Of Life Sciences Departments At All Institution Types, Loretta Brancaccio-Taras, Pamela Pape-Lindstrom, Marcy Peteroy-Kelly, Karen Aguirre, Judy Awong-Taylor, Teri Balser, Michael J. Cahill, Regina F. Frey, Thomas Jack, Michael Kelrick, Kate Marley, Kathryn G. Miller, Marcy Osgood, Sandra Romano, J. Akif Uzman, Jiuqing Zhao

Publications and Research

The PULSE Vision & Change Rubrics, version 1.0, assess life sciences departments’ progress toward implementation of the principles of the Vision and Change report. This paper reports on the development of the rubrics, their validation, and their reliability in measuring departmental change aligned with the Vision and Change recommendations. The rubrics assess 66 different criteria across five areas: Curriculum Alignment, Assessment, Faculty Practice/Faculty Support, Infrastructure, and Climate for Change. The results from this work demonstrate the rubrics can be used to evaluate departmental transformation equitably across institution types and represent baseline data about the adoption of the Vision and Change …


The Impact Of Climate Change On Biodiversity In Nepal: Current Knowledge, Lacunae, And Opportunities, Aishwarya Bhattacharjee, Jose D. Anadon, David L. Lohnman, Tenzing Doleck, Tarendra Lakhankar, Bharat Babu Shrestha, Praseed Thapa, Durga Devkota, Sundar Tiwari, Ajay Jha, Mohan Siwakoti, Naba R. Devkota, Pramod K. Jha, Nir Y. Krakauer Oct 2017

The Impact Of Climate Change On Biodiversity In Nepal: Current Knowledge, Lacunae, And Opportunities, Aishwarya Bhattacharjee, Jose D. Anadon, David L. Lohnman, Tenzing Doleck, Tarendra Lakhankar, Bharat Babu Shrestha, Praseed Thapa, Durga Devkota, Sundar Tiwari, Ajay Jha, Mohan Siwakoti, Naba R. Devkota, Pramod K. Jha, Nir Y. Krakauer

Publications and Research

Nepal has an extreme altitudinal range from 60–8850m with heterogeneous topography and distinct climatic zones. The country is considered a biodiversity hotspot, with nearly a quarter of the land area located in protected areas. Nepal and the surrounding Himalayan region are particularly vulnerable to climate change because of their abrupt ecological and climatic transitions. Tens of millions of people rely on the region’s ecosystem services, and observed and modeled warming trends predict increased climate extremes in the Himalayas. To study the ecological impacts of climate change in Nepal and inform adaptation planning, we review the literature on past, present, and …


How Accurate Are Satellite Estimates Of Precipitation Over The North Indian Ocean?, Satya Prakash, M. R. Ramesh Kumar, Simi Mathew, R. Venkatesan Oct 2017

How Accurate Are Satellite Estimates Of Precipitation Over The North Indian Ocean?, Satya Prakash, M. R. Ramesh Kumar, Simi Mathew, R. Venkatesan

Publications and Research

Following the launch of the Global Precipitation Measurement (GPM) Core Observatory in early 2014, motivated from the successful Tropical Rainfall Measurement Mission (TRMM) satellite, an advanced and sophisticated global multi-satellite precipitation product – Integrated Multi- satellitE Retrievals for GPM (IMERG) was released at finer spatio-temporal scales. This precipitation product has been upgraded recently after several refinements and supposed to be superior to other existing global or quasi-global multi-satellite precipitation estimates. In the present study, IMERG precipitation is comprehensively evaluated for the first time against moored buoy observations over the north Indian Ocean at hourly scale for the study period of …


Escape Burrowing Of Modern Freshwater Bivalves As A Paradigm For Escape Behavior In The Devonian Bivalve Archanodon Catskillensis, Katja Knoll, Rebecca B. Chamberlain, John A. Chamberlain Oct 2017

Escape Burrowing Of Modern Freshwater Bivalves As A Paradigm For Escape Behavior In The Devonian Bivalve Archanodon Catskillensis, Katja Knoll, Rebecca B. Chamberlain, John A. Chamberlain

Publications and Research

Many freshwater bivalves restore themselves to the sediment water interface after burial by upward escape burrowing. We studied the escape burrowing capacity of two modern unionoids, Elliptio complanata and Pyganodon cataracta and the invasive freshwater venerid Corbicula fluminea, in a controlled laboratory setting varying sediment grain size and burial depth. We found that the relatively streamlined E. complanata is a better escape burrower than the more obese P. cataracta. E. complanata is more likely to escape burial in both fine and coarse sand, and at faster rates than P. cataracta. However, successful escape from 10 cm burial, especially in fine …


Assessment Of Differences Between Near-Surface Air And Soil Temperatures For Reliable Detection Of High-Latitude Freeze And Thaw States, Farjana Shati, Satya Prakash, Hamid Norouzi, Reginald Blake Oct 2017

Assessment Of Differences Between Near-Surface Air And Soil Temperatures For Reliable Detection Of High-Latitude Freeze And Thaw States, Farjana Shati, Satya Prakash, Hamid Norouzi, Reginald Blake

Publications and Research

Near-surface air temperature and the underlying soil temperature are among the key components of the Earth’s surface energy budget, and they are important variables for the comprehensive assessment of global climate change. Better understanding of the difference in magnitude between these two variables over high-latitude regions is also crucial for accurate detections of freeze and thaw (FT) states. However, these differences are not usually considered and included in current remote sensing-based FT detection algorithms. In this study, the difference between near-surface air temperature at the 2-meter height and soil temperature at the 5-centimeter depth is assessed using ground-based observations that …


Ligand Modulation Of Sidechain Dynamics In A Wild-Type Human Gpcr, Lindsay D. Clark, Igor Dikiy, Karen Chapman, Karin Ej Rodstrom, James Aramini, Michael V. Levine, George Khelashvili, Soren Gf Rasmussen, Kevin H. Gardner, Daniel M. Rosenbaum Oct 2017

Ligand Modulation Of Sidechain Dynamics In A Wild-Type Human Gpcr, Lindsay D. Clark, Igor Dikiy, Karen Chapman, Karin Ej Rodstrom, James Aramini, Michael V. Levine, George Khelashvili, Soren Gf Rasmussen, Kevin H. Gardner, Daniel M. Rosenbaum

Publications and Research

GPCRs regulate all aspects of human physiology, and biophysical studies have deepened our understanding of GPCR conformational regulation by different ligands. Yet there is no experimental evidence for how sidechain dynamics control allosteric transitions between GPCR conformations. To address this deficit, we generated samples of a wild-type GPCR (A2AR) that are deuterated apart from 1H/13C NMR probes at isoleucine d1 methyl groups, which facilitated 1H/13C methyl TROSY NMR measurements with opposing ligands. Our data indicate that low [Na+] is required to allow large agonist-induced structural changes in A2AR, and that patterns of sidechain dynamics substantially differ between agonist (NECA) and …


Quantitative Analysis Of Regenerative Energy In Electric Rail Traction Systems, Mahmoud Saleh, Oindrilla Dutta, Yusef Esa, Ahmed Mohamed Oct 2017

Quantitative Analysis Of Regenerative Energy In Electric Rail Traction Systems, Mahmoud Saleh, Oindrilla Dutta, Yusef Esa, Ahmed Mohamed

Publications and Research

This paper aims at determining the influential factors affecting regenerative braking energy in DC rail transit systems. This has been achieved by quantitatively evaluating the dependence of regenerative energy on various parameters, such as vehicle dynamics, train scheduling, ground inclination and efficiency of the electrical devices. The recuperated power and energy have been presented by a mathematical model, comprising of a set of empirical forms, which allows for thorough analysis. A detailed simulation model of a typical DC-traction system has been developed to validate the developed empirical forms. The results verified the validity of the proposed mathematical model, and demonstrated …


The Varieties Of Place-Based Education, Laureen Park Oct 2017

The Varieties Of Place-Based Education, Laureen Park

Publications and Research

Traditionally, the predominant focus of Place-based educational (PBE) theories and practices has been the natural environment. The focus of this chapter will be on urban and digital environments as incubators of the PBE goals of experiential learning, interdisciplinarity, critical thinking, ethical reflection, and other goals. The framework used to interpret and analyze the various senses of place is based on the notions of the lifeworld, personalistic attitude, noesis and noema, all concepts found in Edmund Husserl’s Ideas I and II. Urban and virtual places share the characteristic of being built, which has resonances for the interactivity and engagement …


Optimal Microgrids Placement In Electric Distribution Systems Using Complex Network Framework, Mahmoud Saleh, Yusef Esa, Nwabueze Onuorah, Ahmed Mohamed Oct 2017

Optimal Microgrids Placement In Electric Distribution Systems Using Complex Network Framework, Mahmoud Saleh, Yusef Esa, Nwabueze Onuorah, Ahmed Mohamed

Publications and Research

This paper provides a new approach to find the optimal location for Microgrids (MGs) in electric distribution systems using complex network analysis. An optimal location in this paper refers to a location that would result in increased grid resilience, reduced power losses, less line loading, higher voltage stability and secured supply to critical loads during power outage. The criteria used to find the optimal placement of MGs were based on the centrality analysis adopted from complex network theory, the center of mass concept used in physics, and the controlled delivery grid (CDG) concept. An IEEE 30-bus system was used as …


Incorporation And Evaluation Of Authentic Research Experiences Into The Curriculum Through Development Of A Theory Of Action, Pamela Brown, Tammie Cumming, Joan D. Pasley Oct 2017

Incorporation And Evaluation Of Authentic Research Experiences Into The Curriculum Through Development Of A Theory Of Action, Pamela Brown, Tammie Cumming, Joan D. Pasley

Publications and Research

A theory of action outlining undergraduate research program inputs and desired outcomes was developed and used to guide implementation of Course-Based Undergraduate Research Experience (CURE) sections and to create assessment tools to measure attainment of program goals in both apprentice-model undergraduate research and CURE. Student survey results for these two research programs were compared and suggest that many aspects of the academic goals such as designing an experiment, using equipment, collecting and analyzing data, and collaborating with others were achieved in both groups. Regarding the relationship with mentors, both groups reported receiving academic advisement in course selection and career options. …


Stochastic Resonance In A Proton Pumping Complex I Of Mitochondria Membranes, Davneet Kaur, Ilan Filonenko, Lev Mourokh, Cornelius Fendler, Robert H. Blick Sep 2017

Stochastic Resonance In A Proton Pumping Complex I Of Mitochondria Membranes, Davneet Kaur, Ilan Filonenko, Lev Mourokh, Cornelius Fendler, Robert H. Blick

Publications and Research

We make use of the physical mechanism of proton pumping in the so-called Complex I within mitochondria membranes. Our model is based on sequential charge transfer assisted by conformational changes which facilitate the indirect electron-proton coupling. The equations of motion for the proton operators are derived and solved numerically in combination with the phenomenological Langevin equation describing the periodic conformational changes. We show that with an appropriate set of parameters, protons can be transferred against an applied voltage. In addition, we demonstrate that only the joint action of the periodic energy modulation and thermal noise leads to efficient uphill proton …


Spatial Analysis Of High-Resolution Radar Rainfall And Citizen-Reported Flash Flood Data In Ultra-Urban New York City, Brianne Smith, Stephanie Rodriguez Sep 2017

Spatial Analysis Of High-Resolution Radar Rainfall And Citizen-Reported Flash Flood Data In Ultra-Urban New York City, Brianne Smith, Stephanie Rodriguez

Publications and Research

New York City (NYC) is an ultra-urban region, with over 50% impervious cover and buried stream channels. Traditional flood studies rely on the presence of stream gages to detect flood stage and discharge, but these methods cannot be used in ultra-urban areas. Here we create a high-resolution radar rainfall dataset for NYC and utilize citizen and expert reports of flooding throughout the city to study flash flooding in NYC. Results indicate that interactions between the urban area and land–sea boundary have an important impact on the spatial variability of both heavy rainfall and flooding, sometimes in contrast to results obtained …


Degree Of Twisting And Duration Of Symptoms Are Prognostic Factors Of Testis Salvage During Episodes Of Testicular Torsion, Adam S. Howe, Vinaya Vasudevan, Michael Kongnyuy, Kevin Rychik, Lisa A. Thomas, Maria Matuskova, Steven C. Friedman, Jordan S. Gitlin, Edward F. Reda, Lane S. Palmer Sep 2017

Degree Of Twisting And Duration Of Symptoms Are Prognostic Factors Of Testis Salvage During Episodes Of Testicular Torsion, Adam S. Howe, Vinaya Vasudevan, Michael Kongnyuy, Kevin Rychik, Lisa A. Thomas, Maria Matuskova, Steven C. Friedman, Jordan S. Gitlin, Edward F. Reda, Lane S. Palmer

Publications and Research

Background: Testicular torsion is surgical emergency. Prompt diagnosis and treatment of testicular torsion is essential for testicular viability. At surgical exploration, the spermatic cord is seen twisted a variable number of times around its longitudinal axis. There is scant data regarding the degree of twisting and its association with testis outcomes. The purpose of our study is to explore how the degree of torsion factors into testicular outcome using follow-up data.

Methods: We retrospectively reviewed the records of adolescent males who presented with testicular torsion to our institution, looking at duration of pain symptoms, degree of torsion documented in the …


A Stochastic Mesoscale Model Of Transiently Networked Fluids., Lin Zhou, L. Pamela Cook Sep 2017

A Stochastic Mesoscale Model Of Transiently Networked Fluids., Lin Zhou, L. Pamela Cook

Publications and Research

Macroscale models of physically networked fluids suffer from the inability to connect directly to mesoscale processes due to nonlinearity and thus the need for closure approximations. In this paper physically networked complex fluids are modeled stochastically at the mesoscale, thus avoiding the need for closure assumptions. In the modeling and simulations the network consists of linear chains of Hookean bead-spring dumbbells. The linear chains break and reform stochastically subject to prescribed local attractive potentials. In the simulations the topology of the network is tracked allowing for quantification of the distribution of chain lengths and of individual dumbbell stretch. This formulation …


The Mystery Of The Schubert Song: The Linked Data Promise, Kimmy Szeto Sep 2017

The Mystery Of The Schubert Song: The Linked Data Promise, Kimmy Szeto

Publications and Research

Linked open data promises global interconnectedness of a vast amount of data. Web technologies promise to lower the barriers to accessing information and to enable knowledge production of massive scale. But can the web of data answer a music reference question? Starting with a seemingly impossible search for a Schubert song, this article describes how linked data technologies could overcome some limitations of catalog searching. However, technical and conceptual challenges are intertwined in the library community’s effort to publish linked data. Through an analysis of contrasting data models, this article offers a linked data reading of medium of performance and …


Economic Burden, Mortality, And Institutionalization In Patients Newly Diagnosed With Alzheimer’S Disease, Christopher M. Black, Howard Fillit, Lin Xie, Xiaohan Hu, M. Furaha Kariburyo, Baishali M. Ambegaonkar, Onur Baser, Huseyin Yuce, Rezaul K. Khandker Aug 2017

Economic Burden, Mortality, And Institutionalization In Patients Newly Diagnosed With Alzheimer’S Disease, Christopher M. Black, Howard Fillit, Lin Xie, Xiaohan Hu, M. Furaha Kariburyo, Baishali M. Ambegaonkar, Onur Baser, Huseyin Yuce, Rezaul K. Khandker

Publications and Research

Background: Current information is scarce regarding comorbid conditions, treatment, survival, institutionalization, and health care utilization for Alzheimer’s disease (AD) patients.

Objectives: Compare all-cause mortality, rate of institutionalization, and economic burden between treated and untreated newly-diagnosed AD patients.

Methods: Patients aged 65–100 years with ≥1 primary or ≥2 secondary AD diagnoses (ICD-9-CM:331.0] with continuous medical and pharmacy benefits for ≥12 months pre-index and ≥6 months post-index date (first AD diagnosis date) were identified from Medicare fee-for-service claims 01JAN2011–30JUN2014. Patients with AD treatment claims or AD/ADrelated dementia diagnosis during the pre-index period were excluded. Patients were assigned to treated and untreated cohorts …


Climate Matching Drives Spread Rate But Not Establishment Success In Recent Unintentional Bird Introductions, Pedro Abellán, José L. Tella, Martina Carrete, Laura Cardador, José D. Anadón Aug 2017

Climate Matching Drives Spread Rate But Not Establishment Success In Recent Unintentional Bird Introductions, Pedro Abellán, José L. Tella, Martina Carrete, Laura Cardador, José D. Anadón

Publications and Research

Understanding factors driving successful invasions is one of the cornerstones of invasion biology. Bird invasions have been frequently used as study models, and the foundation of current knowledge largely relies on species purposefully introduced during the 19th and early 20th centuries in countries colonized by Europeans. However, the profile of exotic bird species has changed radically in the last decades, as birds are now mostly introduced into the invasion process through unplanned releases from the worldwide pet and avicultural trade. Here we assessed the role of the three main drivers of invasion success (i.e., event-, species-, and location-level factors) on …


Strategies For Improving Approximate Bayesian Computation Tests For Synchronous Diversification, Isaac Overcast, Justin C. Bagley, Michael J. Hickerson Aug 2017

Strategies For Improving Approximate Bayesian Computation Tests For Synchronous Diversification, Isaac Overcast, Justin C. Bagley, Michael J. Hickerson

Publications and Research

Background: Estimating the variability in isolation times across co-distributed taxon pairs that may have experienced the same allopatric isolating mechanism is a core goal of comparative phylogeography. The use of hierarchical Approximate Bayesian Computation (ABC) and coalescent models to infer temporal dynamics of lineage co-diversification has been a contentious topic in recent years. Key issues that remain unresolved include the choice of an appropriate prior on the number of co-divergence events (Ψ), as well as the optimal strategies for data summarization.

Methods: Through simulation-based cross validation we explore the impact of the strategy for sorting summary statistics and the choice …


Choline Supplementation Normalizes Fetal Adiposity And Reduces Lipogenic Gene Expression In A Mouse Model Of Maternal Obesity, Chauntelle Jack-Roberts, Yaelle Joselit, Khatia Nanobashvili, Rachel Bretter, Olga V. Malysheva, Marie A. Caudill, Anjana Saxena, Kathleen Axen, Ahmed Gomaa, Xinyin Jiang Aug 2017

Choline Supplementation Normalizes Fetal Adiposity And Reduces Lipogenic Gene Expression In A Mouse Model Of Maternal Obesity, Chauntelle Jack-Roberts, Yaelle Joselit, Khatia Nanobashvili, Rachel Bretter, Olga V. Malysheva, Marie A. Caudill, Anjana Saxena, Kathleen Axen, Ahmed Gomaa, Xinyin Jiang

Publications and Research

Maternal obesity increases fetal adiposity which may adversely affect metabolic health of the offspring. Choline regulates lipid metabolism and thus may influence adiposity. This study investigates the effect of maternal choline supplementation on fetal adiposity in a mouse model of maternal obesity. C57BL/6J mice were fed either a high-fat (HF) diet or a control (NF) diet and received either 25 mM choline supplemented (CS) or control untreated (CO) drinking water for 6 weeks before timed-mating and throughout gestation. At embryonic day 17.5, HF feeding led to higher (p < 0.05) percent total body fat in fetuses from the HFCO group, while the choline supplemented HFCS group did not show significant difference versus the NFCO group. Similarly, HF feeding led to higher (p < 0.05) hepatic triglyceride accumulation in the HFCO but not the HFCS fetuses. mRNA levels of lipogenic genes such as Acc1, Fads1, and Elovl5, as well as the transcription factor Srebp1c that favors lipogenesis were downregulated (p < 0.05) by maternal choline supplementation in the HFCS group, which may serve as a mechanism to reduce fat accumulation in the fetal liver during maternal HF feeding. In summary, maternal choline supplementation improves indices of fetal adiposity in obese dams at late gestation.


The Effect Of Hydrogen Bonding In Enhancing The Ionic Affinities Of Immobilized Monoprotic Phosphate Ligands, Spiro D. Alexandratos, Xiaoping Liu Aug 2017

The Effect Of Hydrogen Bonding In Enhancing The Ionic Affinities Of Immobilized Monoprotic Phosphate Ligands, Spiro D. Alexandratos, Xiaoping Liu

Publications and Research

Environmental remediation requires ion-selective polymers that operate under a wide range of solution conditions. In one example, removal of trivalent and divalent metal ions from waste streams resulting from mining operations before they enter the environment requires treatment at acidic pH. The monoethyl ester phosphate ligands developed in this report operate from acidic solutions. They have been prepared on polystyrene-bound ethylene glycol, glycerol, and pentaerythritol, and it is found that intra-ligand hydrogen bonding affects their metal ion affinities. The affinity for a set of trivalent (Fe(III), Al(III), La(III), and Lu(III)) and divalent (Pb(II), Cd(II), Cu(II), and Zn(II)) ions is greater …


Improving Disciplinary Literacy In An Electronics Course, Ohbong Kwon, Juanita C. But, Sunghoon Jang Aug 2017

Improving Disciplinary Literacy In An Electronics Course, Ohbong Kwon, Juanita C. But, Sunghoon Jang

Publications and Research

Electronics (EMT1255) is a required course for the Associate Degree in Applied Science (AAS) in Electromechanical Engineering Technology (EMT) at New York City College of Technology. EMT1255 introduces semiconductor devices and their applications in electronic-circuits. Students are expected to understand the structures and principles of semiconductor devices and the configuration and principles of basic electronic circuits. They also learn to analyze and design electronic circuits. In the lab setting, they acquire troubleshooting knowledge and hands-on technical skills. In this reading intensive course, students need to read the lab manual and a textbook of over 700 pages. Therefore, reading and understanding …