Digital Commons Network^™

Responsive O.E.R. Programming At City Tech, Cailean Cooney, Elvis Bakaitis, Sarah Nguyen

Publications and Research

This presentation discusses the multifaceted approach to professional development for faculty around open educational resources.

Milk Duds, Marleen S. Barr

Publications and Research

This is a satirical short story about Trump's immigration policy.

The Atpase Mechanism Of Uvra2 Reveals The Distinct Roles Of Proximal And Distal Atpase Sites In Nucleotide Excision Repair, Brandon C. Case, Silas Hartley, Memie Osuga, David Jeruzalmi, Manju M. Hingorani

Publications and Research

The UvrA2 dimer finds lesions in DNA and initiates nucleotide excision repair. Each UvrA monomer contains two essential ATPase sites: proximal (P) and distal (D). The manner whereby their activities enable UvrA2 damage sensing and response remains to be clarified. We report three key findings from the first pre-steady state kinetic analysis of each site. Absent DNA, a P2ATP-D2ADP species accumulates when the low-affinity proximal sites bind ATP and enable rapid ATP hydrolysis and phosphate release by the highaffinity distal sites, and ADP release limits catalytic turnover. Native DNA stimulates ATP hydrolysis by all four sites, causing UvrA2 to transition …

Dual Complementary Liposomes Inhibit Triple-Negative Breast Tumor Progression And Metastasis, Peng Guo, Jiang Yang, Daxing Liu, Lan Huang, Gillian Fell, Jin Huang, Marsha A. Moses, Debra T. Auguste

Publications and Research

Distinguishing malignant cells from non-neoplastic ones is a major challenge in triple-negative breast cancer (TNBC) treatment. Here, we developed a complementary targeting strategy that uses precisely matched, multivalent ligand-receptor interactions to recognize and target TNBC tumors at the primary site and metastatic lesions. We screened a panel of cancer cell surface markers and identified intercellular adhesion molecule–1 (ICAM1) and epithelial growth factor receptor (EGFR) as optimal candidates for TNBC complementary targeting. We engineered a dual complementary liposome (DCL) that precisely complements the molecular ratio and organization of ICAM1 and EGFR specific to TNBC cell surfaces. Our in vitro mechanistic studies …

Abrogation Of Endogenous Glycolipid Antigen Presentation On Myelin-Laden Macrophages By D-Sphingosine Ameliorates The Pathogenesis Of Experimental Autoimmune Encephalomyelitis, Yi Ban, Wenjuan Dong, Lixing Zhang, Tian Zhou, Ahmad Sabri Altiti, Khaleel Ali, David R. Mootoo, Victoria A. Biaho, Timothy Hla, Yi Ren, Xiaojing Ma

Publications and Research

Background: Although myelin is composed of mostly lipids, the pathological role of myelin lipids in demyelinating diseases remains elusive. The principal lipid of the myelin sheath is b-galactosylceramide (b-Galcer). Its a-anomer (a-Galcer) has been demonstrated to be antigenically presented by macrophages via CD1d, a MHC class I-like molecule. Myelin, which is mostly composed of b-Galcer, has been long considered as an immunologically-inert neuron insulator, because the antigen-binding cleft of CD1d is highly a-form-restricted.

Results: Here, we report that CD1d-mediated antigenic presentation of myelin-derived galactosylceramide (Mye-GalCer) by macrophages contributed significantly to the progression of experimental autoimmune encephalomyelitis (EAE). Surprisingly, this presentation …

Populism Or Embedded Plutocracy? The Emerging World Order, Michael Lee

Publications and Research

Neoliberalism opened up the world economy to fundamentally illiberal regimes.

A Multi-Criteria Gis Model For Suitability Analysis Of Locations Of Decentralized Wastewater Treatment Units: Case Study In Sulaimania, Iraq, Ako Rashed Hama, Rafea Hashim Al-Suhili, Zeren Jamal Ghafour

Publications and Research

Sulaimania is a City located in Kurdistan region in the north of Iraq. The city is facing a lack of water, and it will reach a very critical condition shortly. One of the potential solutions is to reuse the treated wastewater for non-direct human uses such as irrigation, washing, firefighting, groundwater recharging, and others. There is no sewage treatment plant in the city. The wastewater flows into a stream through some sewer outlets, and that causes big environmental issues. Decentralized wastewater treatment units (DTUs) are suggested to solve the issue. The treated wastewater will be used for the irrigation of …

Area And Distance From Mainland Affect In Different Ways Richness And Phylogenetic Diversity Of Snakes In Atlantic Forest Coastal Islands, José Thales Da Motta Portillo, Lilian Sayuri Ouchi-Melo, Lucas Batista Crivellari, Thiago Alves Lopes De Oliveira, Ricardo J. Sawaya, Leonardo Da Silva Duarte

Publications and Research

Aim: The Theory of Island Biogeography posits that ecological and evolutionary processes regulate species richness of isolated areas. We assessed the influences of an island area and distance from the mainland on species richness, phylogenetic diversity, and phylogenetic composition of snakes on coastal islands.

Location: Coastal islands of the megadiverse Atlantic Forest in southeastern Brazil.

Methods: We compiled the species composition of 17 coastal islands in southeastern Brazil. Species richness and phylogenetic diversity were calculated for each island. Phylogenetic composition was measured using principal coordinates of phylogenetic structure. We then employed generalized linear models to test the influence of …

Serum Amyloid P Component Binds Fungal Surface Amyloid And Decreases Human Macrophage Phagocytosis And Secretion Of Inflammatory Cytokines, Nicole E. Behrens, Peter N. Lipke, Darrell Pilling, Richard H. Gomer, Stephen A. Klotz

Publications and Research

In patients with invasive fungal diseases, there is often little cellular inflammatory response. We tested the idea that binding of the human constitutive plasma protein serum amyloid P component (SAP) (also called PTX2) to Candida albicans dampens the innate immune response to this fungus. Many pathogenic fungi have cell surface amyloid-like structures important for adhesion and biofilm formation. Human SAP bound to fungi that expressed functional cell surface amyloid, but SAP had minimal binding to fungi with reduced expression of cell surface amyloid. In the absence of SAP, phagocytosis of fungi by human macrophages was potentiated by expression of amyloid …

A Critical Evaluation Of The Biological Construct Skeletal Muscle Hypertrophy: Size Matters But So Does The Measurement, Cody T. Haun, Christopher G. Vann, Brandon M. Roberts, Andrew D. Vigotsky, Brad J. Schoenfeld, Michael D. Roberts

Publications and Research

Skeletal muscle is highly adaptable and has consistently been shown to morphologically respond to exercise training. Skeletal muscle growth during periods of resistance training has traditionally been referred to as skeletal muscle hypertrophy, and this manifests as increases in muscle mass, muscle thickness, muscle area, muscle volume, and muscle fiber cross-sectional area (fCSA). Delicate electron microscopy and biochemical techniques have also been used to demonstrate that resistance exercise promotes ultrastructural adaptations within muscle fibers. Decades of research in this area of exercise physiology have promulgated a widespread hypothetical model of training-induced skeletal muscle hypertrophy; specifically, fCSA increases are accompanied by …

Tryptophan Confers Resistance To Sds-Associated Cell Membrane Stress In Saccharomyces Cerevisiae, Lea Schroeder, Amy E. Ikui

Publications and Research

Sodium dodecyl sulfate is a detergent that disrupts cell membranes, activates cell wall integrity signaling and restricts cell growth in Saccharomyces cerevisiae. However, the underlying mechanism of how sodium dodecyl sulfate inhibits cell growth is not fully understood. Previously, we have shown that deletion of the MCK1 gene leads to sensitivity to sodium dodecyl sulfate; thus, we implemented a suppressor gene screening revealing that the overexpression of TAT2 tryptophan permease rescues cell growth in sodium dodecyl sulfatetreated Δmck1 cells. Therefore, we questioned the involvement of tryptophan in the response to sodium dodecyl sulfate treatment. In this work, we show that …

Å-Indentation For Non-Destructive Elastic Moduli Measurements Of Supported Ultra-Hard Ultra-Thin Films And Nanostructures, Filippo Cellini, Yang Gao, Elisa Riedo

Publications and Research

During conventional nanoindentation measurements, the indentation depths are usually larger than 1–10 nm, which hinders the ability to study ultra-thin films (<10 >nm) and supported atomically thin two-dimensional (2D) materials. Here, we discuss the development of modulated Å-indentation to achieve sub-Å indentations depths during force-indentation measurements while also imaging materials with nanoscale resolution. Modulated nanoindentation (MoNI) was originally invented to measure the radial elasticity of multi-walled nanotubes. w, by using extremely small amplitude oscillations (<<1 Å) at high frequency, and stiff cantilevers, we show how modulated nano/Å-indentation (MoNI/ÅI) enables non-destructive measurements of the contact stiffness and indentation modulus of ultra-thin ultra-stiff films, including CVD diamond films (~1000 GPa stiffness), as well as the transverse modulus of 2D materials. Our analysis demonstrates that in presence of a standard laboratory noise floor, the signal to noise ratio of MoNI/ÅI implemented with a commercial atomic force microscope (AFM) is such that a dynamic range of 80 dB –– achievable with commercial Lock-in amplifiers –– is sufficient to observe superior indentation curves, having indentation depths as small as 0.3 Å, resolution in indentation <0.05 Å, and in normal load <0.5 nN. Being implemented on a standard AFM, this method has the potential for a broad applicability.

Cryo-Em Structure Of The Human Ferritin–Transferrin Receptor 1 Complex, Linda Celeste Montemiglio, Claudia Testi, Pierpaolo Ceci, Elisabetta Falvo, Martina Pitea, Carmelinda Savino, Alessandro Arcovito, Giovanna Peruzzi, Paola Baiocco, Filippo Mancia, Alberto Boffi, Amédée Des Georges, Beatrice Vallone

Publications and Research

Human transferrin receptor 1 (CD71) guarantees iron supply by endocytosis upon binding of iron-loaded transferrin and ferritin. Arenaviruses and the malaria parasite exploit CD71 for cell invasion and epitopes on CD71 for interaction with transferrin and pathogenic hosts were identified. Here, we provide the molecular basis of the CD71 ectodomain-human ferritin interaction by determining the 3.9 Å resolution single-particle cryo-electron microscopy structure of their complex and by validating our structural findings in a cellular context. The contact surfaces between the heavy-chain ferritin and CD71 largely overlap with arenaviruses and Plasmodium vivax binding regions in the apical part of the receptor …

Transspinal Stimulation Increases Motoneuron Output Of Multiple Segments In Human Spinal Cord Injury, Lynda M. Murray, Maria Knikou

Publications and Research

Targeted neuromodulation strategies that strengthen neuronal activity are in great need for restoring sensorimotor function after chronic spinal cord injury (SCI). In this study, we established changes in the motoneuron output of individuals with and without SCI after repeated noninvasive transspinal stimulation at rest over the thoracolumbar enlargement, the spinal location of leg motor circuits. Cases of motor incomplete and complete SCI were included to delineate potential differences when corticospinal motor drive is minimal. All 10 SCI and 10 healthy control subjects received daily monophasic transspinal stimuli of 1-ms duration at 0.2 Hz at right soleus transspinal evoked potential (TEP) …

Annihilator Dimers Enhance Triplet Fusion Upconversion, Andrew B. Pun, Samuel N. Sanders, Matthew Y. Sfeir, Luis M. Campos, Daniel N. Congreve

Publications and Research

Optical upconversion is a net process by which two low energy photons are converted into one higher energy photon. There is vast potential to exploit upconversion in applications ranging from solar energy and biological imaging to data storage and photocatalysis. Here, we link two upconverting chromophores together to synthesize a series of novel tetracene dimers for use as annihilators. When compared with the monomer annihilator, TIPS–tetracene, the dimers yield a strong enhancement in the triplet fusion process, also known as triplet–triplet annihilation, as demonstrated via a large increase in upconversion efficiency and an order of magnitude reduction of the threshold …

Islam And Buddhism: The Arabian Prequel?, Anna Akasoy

Publications and Research

Conventionally, the first Muslim-Buddhist encounters are thought to have taken place in the context of the Arab-Muslim expansions into eastern Iran in the mid-seventh century, the conquest of Sind in 711 and the rise of the Islamic empire. However, several theories promoted in academic and popular circles claim that Buddhists or other Indians were present in western Arabia at the eve of Islam and thus shaped the religious environment in which Muhammad’s movement emerged. This article offers a critical survey of the most prominent arguments adduced to support this view and discusses the underlying attitudes to the Islamic tradition, understood …

Infrastructures Of Taste: Rethinking Local Food Histories In Lithuania, Renata Blumberg, Diana Mincyte

Publications and Research

Lithuania hosts a diversity of places that offer consumers a taste of local food, which appear to mirror the recent popularity of local and alternative food initiatives globally. In this paper we show that the proliferation of local foods in the region is not a novel phenomenon, nor is it solely a manifestation of taste preferences or identities associated with food. Drawing on the growing scholarly work on the role of infrastructures in mediating social, economic and political relations, we conceptualize the taste for local food as embedded in broader networks and reproduced through material facilities. To advance this argument, …

Games, Movies, And Zombies: Making Ir Fun For Everyone, Shawna M. Brandle

Publications and Research

Throwing as much fun and pop culture into an international relations class as possible, with the goal of improving student learning (and the likelihood of the course running again). Games proved most effective, while movies were less useful in increasing student learning on international relations.

Global Biochemical And Structural Analysis Of The Type Iv Pilus From The Gram-Positive Bacterium Streptococcus Sanguinis, Jamie-Lee Berry, Ishwori Gurung, Jan Haug Anonsen, Ingrid Spielman, Elliot Harper, Alexander M. J. Hall, Vivianne J. Goosens, Claire Raynaud, Michael Koomey, Nicolas Biais, Steve Matthews, Vladimir Pelicic

Publications and Research

Type IV pili (Tfp) are functionally versatile filaments, widespread in prokaryotes, that belong to a large class of filamentous nanomachines known as type IV filaments (Tff). Although Tfp have been extensively studied in several Gram-negative pathogens where they function as key virulence factors, many aspects of their biology remain poorly understood. Here, we performed a global biochemical and structural analysis of Tfp in a recently emerged Gram-positive model, Streptococcus sanguinis. In particular, we focused on the five pilins and pilin-like proteins involved in Tfp biology in S. sanguinis. We found that the two major pilins, PilE1 and PilE2, (i) follow …

Music Synchronizes Brainwaves Across Listeners With Strong Effects Of Repetition, Familiarity And Training, Jens Madsen, Elizabeth Hellmuth Margulis, Rhimmon Simchy-Gross, Lucas C. Parra

Publications and Research

Music tends to be highly repetitive, both in terms of musical structure and in terms of listening behavior, yet little is known about how engagement changes with repeated exposure. Here we postulate that engagement with music affects the inter-subject correlation of brain responses during listening. We predict that repeated exposure to music will affect engagement and thus inter-subject correlation. Across repeated exposures to instrumental music, inter-subject correlation decreased for music written in a familiar style. Participants with formal musical training showed more inter-subject correlation, and sustained it across exposures to music in an unfamiliar style. this distinguishes music from other …

Extraction Of Acids And Bases From Aqueous Phase To A Pseudoprotic Ionic Liquid, Nikolas Patsos, Karin Lewis, Francesco Picchioni, Mark N. Kobrak

Publications and Research

We report experiments on the extraction of acids and bases from an aqueous phase to a pseudoprotic ionic liquid phase consisting of an equimolar mixture of trihexylamine and octanoic acid. We observed the extraction of a wide range of acids and bases, and investigated the mechanism of extraction in detail. Our results confirmed the observation of the Hofmeister effect in these systems reported in our previous work, where the extent of the extraction of copper salts was significantly influenced by the interactions between extracted inorganic anions and the organic phase. Our results further demonstrated that the organic layer served as …

Aligning The Curriculums For College Success: High School And College Library Collaborations, Carl R. Andrews, Dickens Saint Hilaire

Publications and Research

In today’s highly competitive global economy, City University of New York (CUNY) graduates need strong critical thinking skills. More New York City students than ever before are applying to college and enrolling into CUNY schools. This is especially the case with high schools throughout the Bronx, a good portion of these schools are feeder schools for Bronx Community College (BCC). Unfortunately, many of the students who matriculate into BCC come un-prepared for college level work, where information literacy skills are essential. A strong body of published scholarly literature discusses the importance of information literacy instruction at the high school level, …

Self-Assembled Bismuth Selenide (Bi2se3) Quantum Dots Grown By Molecular Beam Epitaxy, Marcel S. Claro, Ido Levy, Abhinandan Gangopadhyay, David J. Smith, Maria C. Tamargo

Publications and Research

We report the growth of self-assembled Bi2se3 quantum dots (QDs) by molecular beam epitaxy on GaAs substrates using the droplet epitaxy technique. The QD formation occurs after anneal of Bismuth droplets under Selenium flux. Characterization by atomic force microscopy, scanning electron microscopy, X-ray diffraction, high-resolution transmission electron microscopy and X-ray reflectance spectroscopy is presented. Raman spectra confirm the QD quality. The quantum dots are crystalline, with hexagonal shape, and have average dimensions of 12-nm height (12 quintuple layers) and 46-nm width, and a density of 8.5 × 109 cm−2. this droplet growth technique provides a means to produce topological insulator …

But What Do The Students Think: Results Of The Cross-Campus Zero-Textbook Cost Student Survey, Shawna M. Brandle, Stacy Katz, Anne Hays, Amy Beth, Cailean Cooney, Linda Miles, Jacqueline Disanto, Abigail Morrison

Publications and Research

The results of the first cross-campus survey of student opinions on Zero Textbook Cost (ZTC) courses are in: City University of New York (CUNY) students like their ZTC courses, primarily for the cost savings and ease of access. The survey results yield rich data about how positively students feel about their Zero Textbook Cost (ZTC) courses as well as ways to improve the design and delivery of Zero Textbook Cost courses to make them more beneficial for student learning.

Opening The Conversation: Getting Started, Stacy Katz

Publications and Research

This column explores the concept of Open Educational Resources and how it relates to librarianship

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The Pedagogies Of Sex Trafficking Postcolonial Fiction: Consent, Agency, And Neoliberalism In Chika Unigwe's On Black Sisters' Street, M Laura Barberan Reinares

Publications and Research

Amnesty International’s 2015-16 push for the decriminalization of sex work sparked yet another international debate on sex trafficking, with the Coalition Against Trafficking in Women (CATW), together with a long list of celebrities and iconic feminists such as Gloria Steinem, claiming that such measure will only worsen sex trafficking, among other problems, and myriad pro-sex work feminists vouch-ing exactly the opposite.1 This dispute is by no means new-as of 2018, it remains at an impasse-but, interestingly, while sociologists and women’s studies scholars have been discussing sex trafficking issues for decades now, and despite its intimate relation to postcolonialism and globalization, …

Editing, Translation, And Recovery Work In Community College English Classes, Christopher Leary

Publications and Research

This article positions community college students as co-researchers who participate in the author’s inquiry into the rhetorical practices of anthology editors

The Processing Of Input With Differential Objectmarking By Heritage Spanish Speakers, Jill Jegerski, Irina A. Sekerina

Publications and Research

Heritage Spanish speakers and adult immigrant bilinguals listened to wh-questions with the differential object marker a (quién/a quién ‘who/whoACC’) while their eye movements across four referent pictures were tracked. The heritage speakers were less accurate than the adult immigrants in their verbal responses to the questions, leaving objects unmarked for case at a rate of 18%, but eye movement data suggested that the two groups were similar in their comprehension, with both starting to look at the target picture at the same point in the question and identifying the target sooner with a quién ‘whoACC’ than with quién ‘who’ questions.

Eighteen Blind Library Users’ Experiences With Library Websites And Search Tools In U.S. Academic Libraries: A Qualitative Study, Adina Mulliken

Publications and Research

Telephone interviews were conducted with 18 blind academic library users around the U.S. about their experiences using their library and its website. The study uses the perspective that blind users’ insights are fundamental. A common theme was that navigating a webpage is time consuming on the first visit. Issues identified include the need for “databases” to be defined on the homepage, accessibly coded search boxes, logical heading structure, and several problems to be resolved on result pages. Variations in needs depending on users’ screen reader expertise were also raised. Suggestions for libraries to address these issues are offered.

Allergen Sensitization And Asthma Outcomes Among World Trade Center Rescue And Recovery Workers, Belen Rojano, Erin West, Emily Federmann, Steven Markowitz, Denise Harrison, Laura Crowley, Paula Busse, Alex D. Federman, Juan P. Wisnivesky

Publications and Research

A large number of World Trade Center (WTC) rescue and recovery workers are affected by asthma. While physical and mental health comorbidities have been associated with poor asthma control in this population, the potential role of allergen sensitization is unknown. This study examined the association of indoor sensitization and exposure as a risk factor for increased asthma morbidity in WTC workers. We used data from a prospective cohort of 331 WTC workers with asthma. Sensitization to indoor allergens was assessed by measurement of antigen-specific serum immunoglobulin E (IgE) levels. We used validated tools to evaluate the exposure to indoor allergens. …