Digital Commons Network^™

Black Elderberry Extract Reduces Cardiometabolic Risk By Lowering Inflammation In Mice, Nick J. Farrell

Master's Theses

No abstract provided.

Comparison Of The Effects Of Three Surgical Techniques On The Rate Of Orthodontic Tooth Movement In A Rat Model, Zachary T. Librizzi

Master's Theses

No abstract provided.

An Analysis Of Juvenile Chinook Salmon Outmigration Speed And Survival In Response To Habitat Features: Sacramento River From Knights Landing To Sacramento, California, Natalie N. Mcnair

Master's Theses

Outmigration is an important life stage for Chinook salmon (Oncorhynchus tshawytscha) survival in the Sacramento River, and yet our understanding of their behavior and needs during this time is limited. To gain a better understanding of their survival and movement rates during outmigration, late fall run Chinook salmon smolts were tracked using acoustic telemetry techniques. Habitat features were measured and quantified throughout the study area to evaluate how Chinook salmon respond to key levee features including shade, instream woody material, and aquatic vegetation. The overall average movement speed through the entire study area was 0.77 m/s with an …

Characterization Of Pressure-Driven And Electro-Kinetically Driven Flow In A Micro-Fluidic Chip Using Particle Imaging Velocimetry, Alexis Weckel

Master's Theses

The flow profiles of pressure-driven and electro-kinetic driven flows were compared for a microfluidic chip. It was found that the pressure-driven flow had a parabolic profile while the electro-kinetic flow had a plug shaped flow profile. The measured velocities were similar to those determined by the Poiseuille flow model and the Helmholtz-Smoltchowski equation. Flow uniformity is very important for control in microfluidic mixers. Parabolic flow profiles lead to inconsistent reactions while the more uniform plug shape flow allow for a more steady reaction across the channel. Previous work had been performed to measure the flow of a solution of fluorescent …

A Finite Element Analysis Of Tibial Stem Geometry For Total Knee Replacements, Aaron Isidro Bautista

Master's Theses

The purpose of this study was to investigate the influence of tibial stem geometry on stress shielding of the tibia for patients with a total knee replacement. Finite element analysis was used to study different tibial stem geometry types, as well as a vast array of different geometric sizes. Both a peg and stem type geometry were analyzed and compared in order to determine what type geometry causes the least amount of stress shielding. A static loading condition with a dynamic loading factor of three was used for the system and the stress responses were analyzed at regions of interest …

Clarification Of Recreational Pool Water Using Biological Additives Produced By Biowish(Tm), Reese Nathaniel Wilson

Master's Theses

Effects of commercially available bacterial products were investigated on two common recreational pool contaminants: sunscreen and cyanuric acid (CYA). Microbial products developed by BiOWiSH Technologies, Inc. were tested for enhancing mechanical filtration and water clarification in bench-scale bioreactors, with conditions mimicking those of recreational pool water. Bacterial consortia included proprietary mixes of Bacillus, Lactobacillus and Pseudomonas, and other genera of bacteria. BiOWiSH products are either fermented on a solid substrate consisting of rice bran and soy meal, or they are mixed with a soluble diluent. Twenty-nine BiOWiSH products were tested throughout forty experiments.

Experiments were carried out to determine both …

Bishop Peak Natural Reserve Conservation Plan Update, Douglas J. Bush

Master's Theses

My master's project is updating the Conservation Plan for the Bishop Peak Natural Reserve (BPNR) in San Luis Obispo, California. It is a professional project for the City of San Luis Obispo, supported by City policy that requires continued management of its open space network through management plans unique to each property. As one of the city's most visited open spaces and one of its most visible natural landmarks, the Bishop Peak Natural Reserve is in need of continued management and oversight. While much of the work in developing the plan focused on identifying issues and developing responsive policy, this …

Structural Micrometeoroid And Radiation Shielding For Interplanetary Spacecraft, Jared Allen Ruekberg

Master's Theses

This paper focused on two significant space forces that can affect the success of a spacecraft: the radiation and micrometeoroid environments. Both are looked at in the context of the region of space between Earth and Mars. The goal was create reference environments, to provide context to results of environmental modeling, and to provide recommendations to assist in early design decisions of interplanetary spacecraft. The radiation section of this report used NASA's OLTARIS program to generate data for analysis. The area of focus was on the radiation effects for crewed missions, therefore effective dose equivalent was the metric used to …

Development Of A Human Tibiofemoral Joint Finite Element Model To Investigate The Effects Of Obesity And Knee Malalignment On Joint Contact Pressure, Meghan Sylvia

Master's Theses

Obesity is a known risk factor for osteoarthritis (OA). Excess body weight generates greater joint contact forces at the knee; however, obese individuals alter their gait to decrease joint contact forces. Knee malalignment has been identified as a strong mediating factor between obesity and knee OA progression. Excess body weight acting on a varus malaligned knee would have an additive effect on cartilage stress and could cause stress levels to exceed the threshold limit for damage and loss of cartilage matrix.

A finite element (FE) model of the human tibiofemoral joint was developed and validated in order to investigate changes …

Locating Optimal Water Quality Monitoring Locations Using Demand Coverage Index Method, Jeffrey Scott Brake

Master's Theses

Water quality regulations are always expanding especially in the field of water quality monitoring; however, threats to our water distribution systems still remain. Components of water distribution systems are susceptible to intentional and accidental contamination; therefore, they represent highly vulnerable aspects of our vital infrastructure.

An analysis was performed on a city in California with a population of 30,000 to 40,000 residents. The analysis is performed to determine the optimal locations of monitoring stations throughout the water distribution system. The method presented by Liu and colleagues (Liu et al, 2012) selects the optimal monitoring locations for the virtual California city …

Hydrologic Response To Conifer Removal From An Encroached Mountain Meadow, Gregory F. Van Oosbree

Master's Theses

Meadows in the Sierra Nevada Mountains are an important ecological resource that have degraded in quality and distribution due to several environmental and anthropogenic stressors. The encroachment of conifers beyond forest meadow ecotones is largely responsible for the decline of meadow habitat throughout the past century. Currently, there is little research that quantifies the hydrologic response to removal of conifers encroaching meadows in terms of implicating successful meadow restoration. This study has implemented a before after control intervention (BACI) study design to determine the hydrologic response associated with the removal of conifers from a historic meadow encroached by conifers. The …

Measuring The Influence That Components Have On Pedestrian Route Choice In Activated Alleys, Samuel Hirsher Gross

Master's Theses

This paper explores how cities have integrated formal planning into improving public space. Through a review of literature on the topic, this the paper identifies the potential design has to renovate narrow streets and alleys, within the public right of way. By preforming an assessment of plans and programs, this paper identifies the common themes or components that have been used by planners, architects, and engineers to improve the urban environment for pedestrians. Based on this information, a pilot study was created to measure the influence the most common components have on pedestrian route choice. The results are then compared …

Growth, Mortality, And Reproductive Potential Of California Halibut (Paralichthys Californicus) Off Central California, Cheryl L. Barnes

Master's Theses

Differences in key biological processes, such as growth and reproduction, can greatly influence localized population dynamics. Thus, it is important to evaluate intraspecific variation at several spatial scales to better understand biological limitations and develop management plans that maximize fishery sustainability. In 2011, the California Department of Fish and Wildlife (CDFW) conducted its first comprehensive stock assessment for California Halibut, Paralichthys californicus. However, limited life history data were available north of Point Conception. To improve our understanding of central California Halibut biology, 704 fish were collected during 2012 and 2013. Von Bertalanffy growth parameters were estimated at L∞ = 1041 …

Cytoflow Optics Analysis, Matthew Wayne Janke

Master's Theses

This project was founded by Cytoflow a flow cytometry company. The company’s aim is to make a custom cytometer that can be used by consumers. The purpose of this project was to create a design for the optics assembly of the cytometer. Prototypes were constructed and then tested to analyze results. Data was collected then analyzed using a specific standard across all cytometers. Using these guidelines a result was yielded that helped to improve the resolution of the system and decrease the size. Making the prototype more efficient and lower the cost. From the design review Cytoflow was able to …

Nutrient Transformations In Algae Raceway Ponds Fed Municipal Wastewater, Carter Michael Reiff

Master's Theses

While treating domestic wastewater, algae can be grown and harvested for biofuel production. Water is a vital resource and it is imperative to conserve and reuse as much as possible. Several pilot and lab scale experiments were conducted to further research into a full scale wastewater treatment and biofuel production facility. This thesis will include these topics: nitrogen and phosphorus concentrations of clarified wastewater pond feed, nitrogen and phosphorus transformations by algae, and the potential of algae cell disruption technologies to increase nutrient solubilization.

The pilot scale experiments were conducted using nine 33 m², 0.3 m deep multi-culture …

Human Impacts On Rocky Intertidal Gastropods: Are Marine Protected Areas Effective?, Cassie Bednar

Master's Theses

As the human population has exponentially increased, so have anthropogenic effects on the ocean including pollution, eutrophication, acidification, changes in sea level, and overfishing. The California coast is visited by millions of people every year and is subject to a range of impacts. In the near-shore marine environment, people collect intertidal gastropods for food, bait or recreation. Collecting these animals has caused a decline in body size because humans preferentially take the largest individuals. Marine protected areas (MPAs), established to protect marine resources, may serve to reduce impacts to species, including gastropods. I collected 2510 individual samples to determine the …

The Effect Of Post-Operative Analgesics On Ovarian Medullary Angiogenesis And Vasculogenesis, Shamus Martin Brady

Master's Theses

A critical factor for successful ovarian transplantation is the expeditious establishment of sufficient blood supply. Recommendations intended to improve recovery, reduce the effects of stress, and decrease the amount of pain for laboratory animals undergoing surgical procedures include post-operative analgesia. The two main types of drugs that are recommended for pain management are opioids and non-steroidal anti-inflammatory drugs (NSAIDs). Buprenorphine, an opioid, and meloxicam, an NSAID, are both widely used and have been shown to affect angiogenesis and vasculogenesis. This study was designed to examine the influence meloxicam and buprenorphine had on new blood vessel formation in the ovarian medullary …

Alfalfa Trap Cropping Increases Abundance Of Key Arachnids In An Organic Strawberry Agroecosystem, Sutapa Biswas

Master's Theses

Eighty three percent of the strawberries consumed in North America are grown in California, where the widespread use of insecticides has become hazardous to public health. The intensive use of pesticides for growing strawberries causes serious health risks to farm workers, in addition to contaminating the soil and groundwater. The cost to the environment and public health in the United States is estimated at $12 billion annually. Finding effective nontoxic management strategies for insect pests has become essential for long term sustainability. One strategy strawberry producers can use to promote sustainability is to increase the effectiveness of biological control techniques. …

Consumer Evaluation: The Link Between Body Mass Index, Reward Sensitivity, Product Liking And Emotion, Malori Comer

Master's Theses

The objectives of this study were: (1) to evaluate consumer acceptance of cheeses varying in fat and sodium levels, (2) to determine if sensitivity to reward and body mass index has an effect on product liking based on fat or salt content, (3) to evaluate the use of FaceReader technology during consumer evaluation and, (4) to determine if consumer’s self-selected, conscious emotions matched with the expressed, subconscious emotions acquired by FaceReader.

Consumer acceptance testing (n=108) was conducted on two medium cheddar cheeses with varying fat levels and two low-moisture part-skim mozzarella cheeses varying in sodium levels. Attributes were measured using …

Virulence Gene Expression Of Vibrio Parahaemolyticus In The Viable But Nonculturable State, Tiffany Pui-Yun Tse

Master's Theses

Vibrio parahaemolyticus is a food-borne pathogen commonly associated with the consumption of raw or undercooked seafood resulting in primary infections of the human gastrointestinal tract. It is estimated to cause about 4500 illnesses each year in the United States. However, infection from this food-borne pathogen can be avoided if this organism is detected in the implicated food, prior to consumption. Current standard methods of detecting this organism are dependent on the culturability of the bacteria. Detection based on an organism’s culturability may be problematic as V. parahaemolyticus has been known to exist in a viable but nonculturable (VBNC) state. Bacteria …

Ecg Classification With An Adaptive Neuro-Fuzzy Inference System, Brad Thomas Funsten

Master's Theses

Heart signals allow for a comprehensive analysis of the heart. Electrocardiography (ECG or EKG) uses electrodes to measure the electrical activity of the heart. Extracting ECG signals is a non-invasive process that opens the door to new possibilities for the application of advanced signal processing and data analysis techniques in the diagnosis of heart diseases. With the help of today’s large database of ECG signals, a computationally intelligent system can learn and take the place of a cardiologist. Detection of various abnormalities in the patient’s heart to identify various heart diseases can be made through an Adaptive Neuro-Fuzzy Inference System …

Screening Of Biocontrol Organisms For The Management Of Phytopathogenic Fungi And Foodborne Pathogens On Produce, Antoinette Boyee De Senna

Master's Theses

The multibillion dollar agricultural industry is an important part of the United States economy, and the management of factors that affect crop and human health is imperative to maintaining this economic sector. The fungi Botrytis cinerea, Fusarium pallidoroseum, and Fusarium moniliforme are the causative agents of several plant diseases and can cause significant crop loss both before and after harvest in commodities such as strawberries, lettuce, citrus, and grains. Fungicides are employed to control these phytopathogens, but the use of these chemicals has led to an increase in fungicide resistance and may negatively affect the environment and human …

Investigation Of Larval Sensory Systems In The Marine Bryozoan, Bugula Neritina, Heather Leigh Price

Master's Theses

Bugula neritina is a sessile marine bryozoan with a pelagic larval stage. Larvae frequently settle on boat hulls, facilitating the introduction of B. neritina to bays and estuaries worldwide. Adrenergic agonists, such as the vertebrate hormone noradrenaline, inhibit larval settlement in a variety of marine invertebrate species, including B. neritina. Light also inhibits B. neritina larval settlement, yet the underlying mechanisms by which light and adrenergic compounds exert their effects on larvae are not well understood. Octopamine is considered the invertebrate analog of noradrenaline, and may be an endogenous hormone involved in larval settlement pathways. I observed the effects of …

Physiological Factors Affecting The Bactericidal Activity Of The Western Fence Lizard (Sceloporus Occidentalis) For The Lyme Disease Spirochete, Borrelia Burgdorferi, Kyle Russell Weichert

Master's Theses

The Western Fence Lizard (Sceloporus occidentalis) is a major host of juvenile stages of the Western Black-legged Tick (Ixodes pacificus), which is the vector for the Lyme disease causative spirochete bacterium Borrelia burgdorferi in the western United States. Because S. occidentalis is reservoir incompetent and capable of eliminating spirochetes from infected ticks, it has been implicated as a major factor in the ecology of Lyme disease in the West. Although complement proteins in lizard blood have been established as the borreliacidal factor, no studies have examined intraspecific variability in host lizard borreliacidal capacity. In Chapter 1 …

Treatment Of Petroleum Hydrocarbons In Oil-Based Drill Cutting Mud Using Biowish Bioaugmentation Products, Diego Jose Cardenas Zepeda

Master's Theses

The efficacy of BiOWiSHTM-Thai Aqua, a commercially discontinued microbial product, in remediating oil based drill-cutting mud (DCM) was researched in this study. Experimentation was performed directly on DCM and on sand contaminated with oil extracted from DCM. A gas chromatograph-mass spectrometrer and a respirometer were used for analysis of total petroleum hydrocarbons (TPH) and CO2 production respectively. Five experiments were analyzed by TPH extraction and analysis; four experiments were analyzed by respirometric analysis. The specific microcosm conditions tested in the experiments were control, nutrient-only control, and bioaugmentation product.

This study concluded that there might be potential for bioaugmentation of TPH …

A Finite Element Analysis On The Viscoelasticity Of Postmenopausal Compact Bone Utilizing A Complex Collagen D-Spacing Model, Austin C. Cummings

Master's Theses

The nanoscale dimension known as D-spacing describes the staggering of collagen molecules, which are fundamental to the biphasic makeup of bone tissue. This dimension was long assumed to be constant, but recent studies have shown that the periodicity of collagen is variable. Given that the arrangement of collagen molecules is closely related to the degree of bone mineralization, recent studies have begun to look at D-spacing as a potential factor in the ongoing effort to battle postmenopausal osteoporosis. The theoretical models presented by previous studies have only opted to model a single collagen-hydroxyapatite period, so the creation of an intricate …

Longitudinal Distribution And Summer Diurnal Microhabitat Use Of California Red-Legged Frogs (Rana Draytonii) In Coastal Waddell Creek, Neil Keung

Master's Theses

Habitat use by federally threatened California Red-Legged Frogs (CRLF; Rana draytonii) is incompletely understood. I captured, PIT-tagged, and radio-tracked CRLFs (n = 20) at Waddell Creek, Santa Cruz County, from July–December 2012. Limited tracking for movements was also conducted in 2013. Frogs were clumped in deep, complex habitats along the stream within 2 km of breeding ponds near the stream mouth, but most adults were concentrated in the lagoon. Marked and tracked frogs had very small summer home ranges, and most returned to the same home range after breeding. Frogs tended to use good aquatic (e.g., wood, undercut banks, dense …

Gender Differences In Stress, Alcohol Consumption, And Cigarette Use Among College Students At San José State University, Thomas Farleigh

Master's Theses

Stress, alcohol consumption, and cigarette use represent three considerable threats to the mental and physical health within this country. Learning more about the prevalence and predictors of these threats in young adults may aid the development of programs to reduce the deleterious effects of these threats as young adult's age. A vast amount of research has been done to examine the possible association between stress and substance use in college students, but given the diversity of college students across the US, more research is needed targeting specific college campuses. This study did so with regard to a sample of students …

Modeling Black Bear-Vehicle Collision Zones In Yosemite National Park, Katie Elaine Rodriguez

Master's Theses

The purpose of this study was to identify road and habitat characteristics associated with black bear-vehicle collisions in Yosemite National Park and to suggest proper mitigations to reduce their occurrence. Black bear-vehicle collision data collected by Yosemite National Park staff between 1995 and 2011 were used to identify variables associated with collisions. Geographic Information System (GIS) mapping software was used to map and split Yosemite roads into 1 km segments. After measuring road and bear habitat-related variables along each road segment, logistic regression analyses showed that segments with collisions were associated with crossing sites, understory vegetation, curves, close proximity to …

Investigation Of Population Structure And Distribution Of The Invasive Bryozoan Watersipora Species Along The California Coast Using Nuclear And Mitochondrial Dna, Darren James Wostenberg

Master's Theses

This study combined microsatellite nuclear DNA analysis with cytochrome c oxidase 1 (COI) mitochondrial DNA analysis to evaluate coastal population structure, environmental factors influencing population distribution, and the potential for hybridization among coexisting Watersipora haplogroups along the California coast. Mitochondrial DNA analysis of the COI gene identified three haplogroups: W. subtorquata clade A, W. subtorquata clade B, and W. new species. Analyses resulted in seven haplotypes for haplogroup clade A, and a single haplotype in each haplogroup clade B and new species. Microsatellite data indicated the greatest source of genetic variation in the two species examined (W. subtorquata and W. …