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Subject-Specific Human Knee Fea Models For Transtibial Amputees Vs Control Tibial Cartilage Pressure In Gait, Cycling And Elliptical Training, Ali Yazdkhasti

Master's Theses

Millions of individuals around the globe are impacted by osteoarthritis, which is the prevailing type of arthritis. This condition arises as a result of gradual deterioration of the protective cartilage that safeguards the ends of the bones. This is especially true of transtibial amputees, who have a significantly higher incidence of osteoarthritis of the knee in their intact limb than non-amputees. Engaging in regular physical activity, managing weight effectively, and undergoing specific treatments can potentially slow down the advancement of the disease and enhance pain relief and joint function. Nevertheless, the relationship between the type of exercise and its impact …

Mountain Lion Resource Selection In The California Central Coast: Modeling Habitat Suitability For A Large Carnivore In A Rapidly Changing Environment, Megan Elizabeth O'Connor

Master's Theses

Land use conversion toward agriculture such as orchards and vineyards can have severe negative impacts on habitat and wildlife, particularly large carnivores, globally through habitat fragmentation and loss. The mountain lion (Puma concolor) population in the California Central Coast is thought to provide “stepping-stone” connectivity between several severely genetically compromised coastal populations throughout the Santa Cruz Mountains and several mountain ranges in Southern California; however, the California Central Coast is one of the fastest-developing regions of California with little protection against future land use conversion. Conserving areas of and corridors between high-quality mountain lion habitat through conservation easements …

Annotation Of Non-Model Species’ Genomes, Taiya Jarva

Master's Theses

The innovations in high throughput sequencing technologies in recent decades has allowed unprecedented examination and characterization of the genetic make-up of both model and non-model species, which has led to a surge in the use of genomics in fields which were previously considered unfeasible. These advances have greatly expanded the realm of possibilities in the fields of ecology and conservation. It is now possible to the identification of large cohorts of genetic markers, including single nucleotide polymorphisms (SNPs) and larger structural variants, as well as signatures of selection and local adaptation. Markers can be used to identify species, define population …

Climate & Conflict: View Into A Warming World, Faelynn Carroll

Master's Theses

Unlike weather patterns, the El Niño Southern Oscillation (ENSO) is a large-scale, cyclical climate system that is now predictable for up to a year and a half in advance. ENSO cycles occur every two to seven years for approximately two years at a time, affecting large swaths of the globe with plausibly random variation in the exact location and strength of local effects. However, its systemic nature allows for aggregate effects to be accounted for by its outcomes. This research uses novel 0.5 x 0.5 degree ENSO teleconnection analysis for precipitation and temperature to uncover environmental mechanisms that underly the …

Evaluating The Field Efficacy Of Uv-C On Two California Strawberry Arthropod Pests, Jose Luis Alvarado Rojas

Master's Theses

The efficacy of two different autonomous Ultraviolet-C (UV-C) units on two spotted spidermite, Tetranychus urticae Koch (Acari: Tetranychidae), and greenhouse whitefly, Trialeurodes vaporariorum. (Hemiptera: Aleyrodidae). was tested in four commercial strawberry fields in California.

In 2020, California strawberry growers used 12 million pounds of active ingredients (AIs) to keep pests under economic thresholds. While pesticides are an important part of an integrated pest management program, their use poses threats to the environment and human health. To protect agricultural workers, the public and the environment, regulators in California have consistently limited or removed the use of certain pesticide AIs. For …

Gyroless Nanosatellite Attitude Determination Using An Array Of Spatially Distributed Accelerometers, Kory J. Haydon

Master's Theses

The low size and budget of typical nanosatellite missions limit the available sensors for attitude estimation. Relatively high noise MEMS gyroscopes often must be employed when accurate knowledge of the spacecraft’s angular velocity is necessary for attitude determination and control. This thesis derived and tested in simulation the “Virtual Gyroscope” algorithm, which replaced a standard gyroscope with an array of spatially distributed accelerometers for a 1U CubeSat mission. A MEMS accelerometer model was developed and validated using Root Allan Variance, and the Virtual Gyroscope was tested both in the open loop configuration and as a replacement for a gyroscope in …

Evaluation Of Potential Surrogates For Listeria Monocytogenes In Fresh Citrus-Specific Validation Studies, Kimiko Grace Casuga

Master's Theses

The FSMA Produce Safety Rule (PSR) requires citrus packers to more closely assess, manage, and monitor food safety risks. Although there have been no foodborne illness outbreaks and only one recall in fresh citrus, the risk of pathogens coming in on the fruit and cross contamination during washing still exists. Packhouses have dynamic washing systems and in-plant validations may be the only way to demonstrate compliance with the PSR. In-plant validations use surrogates in place of pathogens, and none have been identified or validated for citrus. The aim of this research was to identify a surrogate for use in fresh …

The Women Of Justice: Narratives Of Women Attorneys In California During The 1960s And 1990s, Sarah Zion

Master's Theses

This thesis interviews two women attorneys who have not previously shared their stories to relate their experience of going to law school and entering the field after graduation. The study of women lawyers and their stories is not a new topic, however, there is a focus in the scholarship to only explore the tales of the women who reached the big firsts, such as first female lawyer or first female judge. By providing interviews of women who have not reached these big accomplishments, the field gains a more rounded understanding of the history of female lawyers. The two women interviewed …

The Effect Of Irrigation On Dry-Farmed Vitis Vinifera L. Cv. Zinfandel As A Function Of Age, Jocelyn Alvarez Arredondo

Master's Theses

A one-year study was conducted in the Central Coast of California at a commercial vineyard to evaluate the effect of supplemental irrigation on dry-farmed Vitis vinifera L. cv. Zinfandel with varying vine ages during the 2021 growing season. The experimental block was historically dry-farmed on own-rooted Zinfandel vines, older vines were replaced as production quality decreased with a genetically identical scion grafted onto St. George (Vitis vinifera Scheel) rootstock. Six total treatments were included in this study, with Young vines (5 to 12 years old), Old vines (40 to 60 years old), and Control (2:1 ratio of old to …

Reducing Scope 3 Emissions By Investing In Regenerative Agriculture In Supply Chains, Stephanie Cain

Master's Theses

The agricultural industry has an opportunity to shift to a more sustainable practice that helps restore vital topsoil, improve water quality, reduce environmental impact, and sequester atmospheric carbon into the vast soil carbon pool. However, to implement these practices at considerable scale, agricultural producers require access to resources and capital they rarely have and can be difficult to acquire. As a company, investing in regenerative agriculture in supply chains can lead to reduced Scope 3 emissions, more resilient supply chains, and better marketability as an investment fund, an employer, and a brand. Insetting regenerative agriculture can protect supply chains against …

Food For Thought: The Effects Of Feeding On Neurogenesis In The Ball Python, Python Regius, Hannah F. Bow

Master's Theses

Pythons are a well-studied model of postprandial physiological plasticity. Consuming a meal has been shown by past work to evoke a suite of physiological changes in pythons and elicit one of the largest documented increases in post-feeding metabolic rates relative to resting values. However, little is known about how this plasticity manifests in the brains of ball pythons, Python regius. Previous work using the cell-birth marker 5-bromo-12’-deoxyuridine (BrdU) has shown that cell proliferation in the python brain increases six days following meal consumption. This study aimed to confirm these findings and build on them in the long term by …

Predicting Location And Training Effectiveness (Plate), Erik Rolf Bruenner

Master's Theses

Abstract Predicting Location and Training Effectiveness (PLATE)
Erik Bruenner

Physical activity and exercise have been shown to have an enormous impact on many areas of human health and can reduce the risk of many chronic diseases. In order to better understand how exercise may affect the body, current kinesiology studies are designed to track human movements over large intervals of time. Procedures used in these studies provide a way for researchers to quantify an individual’s activity level over time, along with tracking various types of activities that individuals may engage in. Movement data of research subjects is often collected through …

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Neural Tabula Rasa: Foundations For Realistic Memories And Learning, Patrick R. Perrine

Master's Theses

Understanding how neural systems perform memorization and inductive learning tasks are of key interest in the field of computational neuroscience. Similarly, inductive learning tasks are the focus within the field of machine learning, which has seen rapid growth and innovation utilizing feedforward neural networks. However, there have also been concerns regarding the precipitous nature of such efforts, specifically in the area of deep learning. As a result, we revisit the foundation of the artificial neural network to better incorporate current knowledge of the brain from computational neuroscience. More specifically, a random graph was chosen to model a neural system. This …

Understanding The Flow Dynamics Of The Pearl River, Ms, Through Hydrodynamic Modeling, Nahruma Mehzabeen Pieu

Master's Theses

The Pearl River brings fresh water and nutrients into Lake Borgne regulating conditions for oyster growth in estuarine waters. However, there are no flow measurement stations installed on East Pearl or West Pearl either at the river outlets or after the upstream bifurcation of the Pearl. This study aims to model the Lower Pearl River to understand the flow dynamics in the major branches, and to determine the final outflow distribution into the Mississippi Sound, aiming to improve river forcing for ocean models studying estuarine dynamics of the Mississippi Sound.

Synthetic meandering bathymetry with updated banks is developed and applied …

A Novel Approach To Extending Music Using Latent Diffusion, Keon Roohparvar, Franz J. Kurfess

Master's Theses

Using deep learning to synthetically generate music is a research domain that has gained more attention from the public in the past few years. A subproblem of music generation is music extension, or the task of taking existing music and extending it. This work proposes the Continuer Pipeline, a novel technique that uses deep learning to take music and extend it in 5 second increments. It does this by treating the musical generation process as an image generation problem; we utilize latent diffusion models (LDMs) to generate spectrograms, which are image representations of music. The Continuer Pipeline is able to …

Integrative Analyses Of Genomic And Metabolomic Data Reveal Molecular Mechanisms Associated With Uterine Disease Traits In Transitioning Dairy Cattle, Leanna C. Sanchez, Mohammed Abo-Ismail, Daniel Peterson, Fernando Campos-Chillon

Master's Theses

The metritis complex (MC), characterizing post-partum uterine diseases in dairy cattle has negative implications on animal welfare, production efficiency, and the economic stability of the dairy industry. The studies in this thesis aimed to investigate the genetic architecture of the metritis complex and identify genomic regions and metabolites associated with the development of MC. Thereby enhancing our understanding of the biological pathways and molecular mechanisms involved in the pathophysiology of MC during the transition period in Jersey and Holstein dairy cattle.

Chapter 2 sheds light on the previous work done on MC. The goals of this review were to (1) …

Southern Sea Otter (Enhydra Lutris Nereis) Fur Morphology, Thermal Function, And Buoyancy Across Ontogeny, Kate Riordan

Master's Theses

Sea otters (Enhydra lutris) have the densest fur of any animal, and the hairs function to trap a layer of air that is used for insulation. When a sea otter is born, it has a natal pelage (baby fur), and sea otters eventually molt that fur and replace it with a pelt resembling the adult fur. Sea otter fur is composed of 3 types of hairs: underhairs, intermediate hairs, and guard hairs. Sea otters are more susceptible to the negative effects of oiling from oil spills compared to other marine mammal species because they solely rely on fur …

Distributed Control Of Servicing Satellite Fleet Using Horizon Simulation Framework, Scott Plantenga

Master's Theses

On-orbit satellite servicing is critical to maximizing space utilization and sustainability and is of growing interest for commercial, civil, and defense applications. Reliance on astronauts or anchored robotic arms for the servicing of next-generation large, complex space structures operating beyond Low Earth Orbit is impractical. Substantial literature has investigated the mission design and analysis of robotic servicing missions that utilize a single servicing satellite to approach and service a single target satellite. This motivates the present research to investigate a fleet of servicing satellites performing several operations for a large, central space structure.

This research leverages a distributed control approach, …

Predictive Ability Of A 3d Body Scanning Mobile Application For Metabolic Health Risk, Caleb Brandner

Master's Theses

There is an increasing prevalence of obesity within the US and rising rates of metabolic syndrome among those aged 20-39 concurrent with a decrease in the reception of primary care. Limitations to healthcare including access, cost, and availability, highlighting the need for simple, efficient, and accessible cardiometabolic health risk screening. Given the surge in smartphone ownership over the last decade, this study sought to determine the predictive ability of a mobile 3D-optical (3DO) body composition assessment application in determining metabolic health risk. A total of 62 participants (female: 36) underwent traditional anthropometric measurements, 3DO body scanning using a smartphone application, …

Identification Of Spring And Fall Spawned Eggs And The Genetic Distinction Of Gulf Sturgeon In The Choctawhatchee River, Alabama-Florida, Nicholas Lamey

Master's Theses

The Gulf Sturgeon (GS; Acipenser oxyrinchus desotoi) is a threatened subspecies of Atlantic Sturgeon (Acipenser oxyrinchus oxyrinchus) which inhabits the Gulf Coast of the United States. Prior studies of Eurasian sturgeon species and Atlantic Sturgeon have revealed the existence of a dual spawning strategy (i.e. spring and fall). The presence of a fall spawn has also been proposed for GS, but only with the support of circumstantial evidence. This study used molecular techniques to investigate seasonality of GS spawning and the possibility that this has produced unique genetic groups in the Choctawhatchee River. Mitochondrial DNA from suspected …

Refactoring Dependency Loading And Standardizing Factory Patterns In The Horizon Simulation Framework, Jack W. Kelly

Master's Theses

The Horizon Simulation Framework (HSF) is an open-source community driven mod- eling and simulation tool developed over 15 years by a lineage of Cal Poly graduate students. The tool excels in its flexibility to model an assortment of complex systems, with prebuilt modeling elements available for the simulation of space missions. A high-level simulation tool like HSF lends itself to an agile development cycle as system constraints can be quickly identified through day in the life simulation of the modeled system. The objective of the work presented in this thesis is to refactor the way in which several modeling elements …

Solving Supersonic Flows Using The Method Of Integral Relations In Python, Eddie Hsieh

Master's Theses

This thesis presents a modern approach to the Method of Integral Relations implemented in the Python programming language. This work is based on South's reports on solving supersonic conical flows and Belotserkovskii's publications on solving supersonic flows over blunt bodies. The Python SciPy library is extensively used in this thesis. A root finder module is used to perform South's solution process, and the Runge-Kutta ODE solver with dense output is implemented to replicate Belotserkovskii's solution process. The implementation of Python makes the development efficient and serves as an open-source framework for future work to build on. This work focuses on …

Range-Doppler Map Processing Chain For Marine Radar On Fpga Of An Rfsoc, Nickolas W. Ogilvie

Master's Theses

To improve the accuracy and resolution of the measurements, radar systems employ increasingly complex, resource-intensive signal processing, larger bandwidths, and higher carrier frequencies. However, implementing these improvements requires more expensive, complex electronics that are larger and use more power. Using RFSoC (Radio Frequency System on Chips) in radars can address these challenges. By combining processors, an FPGA (Field Programmable Gate Array), and RF data converters into a single integrated circuit, RFSoCs allow for radar electronics that are physically smaller, use less power, and are simpler to design. As using RFSoCs to perform RF data conversion for radars has been already …

Adaptive Fascism: A Study Of Far-Right Politics In The Americas, Blake Mustachio

Master's Theses

Populism as a term is too ambiguous to describe the surge in far-right nationalistic leaders both during the Cold War and the present day. This paper proposes to solve this quagmire by proposing the term adaptive fascism. Adaptive fascism is the idea that far- right leaders using tactics that have legacies within fascist rhetoric have adapted the fascist rhetoric to fit more within the geopolitical situations of each leader’s respective time period. Looking at both leaders of the Cold War, including Jorge Videla of Argentina and Augusto Pinochet of Chile. As well as modern day leaders, Donald Trump of the …

Balancing Privacy And Accuracy In Iot Using Domain-Specific Features For Time Series Classification, Pranshul Lakhanpal

Master's Theses

ε-Differential Privacy (DP) has been popularly used for anonymizing data to protect sensitive information and for machine learning (ML) tasks. However, there is a trade-off in balancing privacy and achieving ML accuracy since ε-DP reduces the model’s accuracy for classification tasks. Moreover, not many studies have applied DP to time series from sensors and Internet-of-Things (IoT) devices. In this work, we try to achieve the accuracy of ML models trained with ε-DP data to be as close to the ML models trained with non-anonymized data for two different physiological time series. We propose to transform time series into domain-specific 2D …

Suppression Of National Identities: Ukrainian And Baltic Cultures In The Soviet Union, Jonathan H. Mastman

Master's Theses

This thesis defines the formation and consummation of Soviet Bolshevism as another imperialist force rather than its stated objective of freeing the people of the United Soviet Socialist Republics from the clutches of an inequitable elite. Through the policies and objectives of the Soviet government the workers and citizens of Ukraine and the Baltic republics were not liberated or given autonomy over their lives and labor, as Marxist-Leninism would have them believe. I review the Russification efforts found first in the Tsarist Russian Empire and then continued by Soviets in the nature of pursuing or denying cultural, political, and economic …

Deep Learning Recommendations For The Acl2 Interactive Theorem Prover, Robert K. Thompson, Robert K. Thompson

Master's Theses

Due to the difficulty of obtaining formal proofs, there is increasing interest in partially or completely automating proof search in interactive theorem provers. Despite being a theorem prover with an active community and plentiful corpus of 170,000+ theorems, no deep learning system currently exists to help automate theorem proving in ACL2. We have developed a machine learning system that generates recommendations to automatically complete proofs. We show that our system benefits from the copy mechanism introduced in the context of program repair. We make our system directly accessible from within ACL2 and use this interface to evaluate our system in …

Estimating The Impact Of Infill Housing On Reduction In Vehicle Miles Traveled, Peyton Marie Ratto

Master's Theses

Vehicle miles traveled (VMT) and its relationship with the built environment has been extensively studied. Most notably, five D variables of the built environment including density, diversity, design, destination accessibility, and distance to transit are the key variables included in this research to explain VMT generation from housing developments. This thesis uses prior research that developed robust statistical models and findings to create a framework to estimate VMT reduction affected by infill housing developed using incentives provided by the state compared to a regional comparator. The regional comparator is typically a suburban single-family housing development in the region. The models …

Development Of A Low-Cost Acoustic Gauge For Simultaneous Tide And Wave Measurement, Alexander Kalman Dunn

Master's Theses

High-quality tide and wave data are essential in a variety of fields including coastal engineering, climate science, disaster response, and recreational activities. Accurate data are publicly accessible from government organizations such as the National Oceanic and Atmospheric Administration (NOAA), however the high costs associated with deploying and maintaining their high accuracy gauges results in a deficit of localized data. Commercial gauges available starting at $2,000 are still expensive for local agencies and individual users to deploy and maintain. These commercial options can also be limited in their scope, accuracy, or ease of use. In this thesis, a low-cost acoustic gauge …

Examining The Use Of A Network Bypass To Circumvent Data Diodes Within Industrial Control Systems, Bryce Molesh

Master's Theses

Our modern world relies upon large scale industrial plants, that are manged by Industrial Control Systems (ICS), to provide critical services such as electricity, water, or waste processing. Over time, these systems have been increasingly connecting outdated systems to modern internet technology to provide additional functionality such as real-time monitoring while also enabling operators to conduct modern business analytics. Thus, these plants offer a potential target for attackers. Recently, such attacks on Industrial Control Systems have increased in number with well publicized attacks such as Stuxnet and TRISIS. To protect against such attacks while also modernizing their networks, Industrial Control …