Digital Commons Network^™

A Sindy Hardware Accelerator For Efficient System Identification On Edge Devices, Michael Sean Gallagher

Master's Theses

The SINDy (Sparse Identification of Non-linear Dynamics) algorithm is a method of turning a set of data representing non-linear dynamics into a much smaller set of equations comprised of non-linear functions summed together. This provides a human readable system model the represents the dynamic system analyzed. The SINDy algorithm is important for a variety of applications, including high precision industrial and robotic applications. A Hardware Accelerator was designed to decrease the time spent doing calculations. This thesis proposes an efficient hardware accelerator approach for a broad range of applications that use SINDy and similar system identification algorithms. The accelerator is …

Automated Tree Mortality Detection Using Ubiquitously Available Public Data, Michael T. Huggins

Master's Theses

Understanding the dynamic interplay between fire severity, topography, and tree mortality, is crucial for predicting future forest dynamics and enhancing resilience against climate change-induced wildfire regimes. This thesis develops a multi-sensor approach for automated estimation of tree mortality, then applies it to examine trends in tree mortality over a six-year period across a fire affected study site in the Trinity River basin in Northern California. The Random Forest model uses publicly available USGS 3D Elevation Program Lidar (3DEP) and NAIP imagery as inputs and is likely to be easily adaptable to other landscapes. The model had a Receiver Operating Characteristic …

Mary Ann Starkey: Domesticity & Political Leadership In New Bern, North Carolina During The Civil War, Julie A. Zafiratos

Master's Theses

Mary Ann Starkey was a pivotal change agent in New Bern, North Carolina during the Civil War. She was born into slavery, yet by 1863 was in a position to bring together abolitionists and recruiters from the North and refugees and freedom fighters from her community. She was president of the 400-member Colored Women’s Union Relief Association of Newbern, North Carolina which worked to heal, feed and support the first colored regiments in North Carolina in their fight for freedom. This thesis looks closely at the Civil War through the life of this one woman, by examining the archival evidence …

Stress Effects On The Growth Physiology Of Pacific Rockfishes (Sebastes Spp.): Negative Impacts Of Cortisol And Elevated Temperature Exposure, Hayley M. Mapes

Master's Theses

Fish experiencing stressful conditions increase production of the glucocorticoid hormone cortisol, which alters energy intake and allocation to help recover physiological homeostasis. Fish experiencing prolonged elevations of cortisol, however, often exhibit reduced somatic growth. While it has been shown previously in fish that cortisol inhibits anabolic growth processes in part via changes in endocrine growth hormone (Gh)/insulin- like growth factor-1 (Igf1) signaling, it is not fully understood which components of Gh/Igf1 pathways are modulated by cortisol. Here, we explored how cortisol influences the Gh/Igf1 system in blue rockfish (Sebastes mystinus) by administering exogenous cortisol and examining effects on …

Insights Into Cellular Evolution: Temporal Deep Learning Models And Analysis For Cell Image Classification, Xinran Zhao

Master's Theses

Understanding the temporal evolution of cells poses a significant challenge in developmental biology. This study embarks on a comparative analysis of various machine-learning techniques to classify cell colony images across different timestamps, thereby aiming to capture dynamic transitions of cellular states. By performing Transfer Learning with state-of-the-art classification networks, we achieve high accuracy in categorizing single-timestamp images. Furthermore, this research introduces the integration of temporal models, notably LSTM (Long Short Term Memory Network), R-Transformer (Recurrent Neural Network enhanced Transformer) and ViViT (Video Vision Transformer), to undertake this classification task to verify the effectiveness of incorporating temporal features into the classification …

A Comparison Of Western And Eastern Soft Systems Approaches, John L. Anaya, John L. Anaya, John L. Anaya

Master's Theses

Soft System Approaches have been developed worldwide to help problem-solvers and decision-makers develop solutions to complex problems, such as aerospace systems. Soft System Approaches were designed to help lower the disorder of developing a complex system by increasing understanding of a situation. Four Soft System Approaches were investigated, two from the West and two from the East. Within the context of the paper, the West refers to thought patterns associated with thinkers and scientists in Europe and North America, and the East refers to those from and around China. The two from the West are Peter Checkland’s Soft Systems Methodology …

A Study On Ethical Hacking In Cybersecurity Education Within The United States, Jordan Chew

Master's Theses

As the field of computer security continues to grow, it becomes increasingly important to educate the next generation of security professionals. However, much of the current education landscape primarily focuses on teaching defensive skills. Teaching offensive security, otherwise known as ethical hacking, is an important component in the education of all students who hope to contribute to the field of cybersecurity. Doing so requires a careful consideration of what ethical, legal, and practical issues arise from teaching students skills that can be used to cause harm. In this thesis, we first examine the current state of cybersecurity education in the …

Supersonic Air Inlet Modeling Using The Method Of Characteristics, Shay S. Takei

Master's Theses

The Air Inlet Method of Characteristics Analysis Tool (AIMCAT), a tool based in Python 3, is developed to model supersonic air inlet geometries during the early phases of design. The method of characteristics (MOC) is used to solve the governing equations for an inviscid, irrotational, isentropic, steady, supersonic flowfield. A comparison is made between modeling shock waves implicitly using Mach wave coalescence and modeling them explicitly using oblique shock relations. Multiple test cases are used to assess the accuracy of the tool by comparing to experimental wind tunnel data. Good general agreement was achieved over the majority of the supersonic …

Coralai: Emergent Ecosystems Of Neural Cellular Automata, Aidan A. Barbieux, Aidan A. Barbieux

Master's Theses

Artificial intelligence has traditionally been approached through centralized architectures and optimization of specific metrics on large datasets. However, the frontiers of fields spanning cognitive science, biology, physics, and computer science suggest that intelligence is better understood as a multi-scale, decentralized, emergent phenomenon. As such, scaling up approaches that mirror the natural world may be one of the next big advances in AI. This thesis presents Coralai, a framework for efficiently simulating the emergence of diverse artificial life ecosystems integrated with modular physics. The key innovations of Coralai include: 1) Hosting diverse Neural Cellular Automata organisms in the same simulation that …

Improving Automatic Transcription Using Natural Language Processing, Anna Kiefer

Master's Theses

Digital Democracy is a CalMatters and California Polytechnic State University initia-
tive to promote transparency in state government by increasing access to the Califor-
nia legislature. While Digital Democracy is made up of many resources, one founda-
tional step of the project is obtaining accurate, timely transcripts of California Senate
and Assembly hearings. The information extracted from these transcripts provides
crucial data for subsequent steps in the pipeline. In the context of Digital Democracy,
upleveling is when humans verify, correct, and annotate the transcript results after
the legislative hearings have been automatically transcribed. The upleveling process
is done with the …

Finite Element Analysis Of The Bearing Component Of Total Ankle Replacement Implants During The Stance Phase Of Gait, Timothy S. Jain

Master's Theses

Total ankle replacement (TAR) implants are an effective option to restore the range of motion of the ankle joint for arthritic patients. An effective tool for analyzing these implants’ mechanical performance and longevity in-silico is finite element analysis (FEA). ABAQUS FEA was used to statically analyze the von Mises stress and contact pressure on the articulating surface of the bearing component in two newly installed fixed-bearing total ankle replacement implants (the Wright Medical INBONE II and the Exactech Vantage). This bearing component rotates on the talar component to induce primary ankle joint motion of plantarflexion and dorsiflexion. The stress response …

Data-Driven Control Of Acoustic Waves Using Movable And Flexible Scatterers, Noam Smilovich

Master's Theses

Partial Differential Equations (PDEs) serve as fundamental tools in scientific and engineering disciplines, modeling phenomena ranging from material design to climate dynamics. Developing robotic systems capable of controlling PDE-governed systems, particularly when these phenomena are only partially observable, has the potential to drive significant technological advancements. This work presents a framework that leverages physics-informed machine learning (ML) for the control of PDEs. At the core of this approach is an agent equipped with sensors that generate a low-dimensional, physics-informed representation of the environment, enabling the derivation of optimal sparse control policies for the agent’s actuators. The focus is on manipulating …

Thermal Runaway Analysis And Cooling Strategies For Nmc 523 Li-Ion Battery Packs Using Pcm, Heat Pipes, And Air Cooling, Vijethvardhan Singh

Master's Theses

The growing demand for electric vehicles (EVs) necessitates efficient thermal management of lithium-ion batteries (LIBs), especially NMC 523 cells. This thesis investigates thermal runaway (TR) mechanisms and evaluates cooling strategies to mitigate overheating risks. Using ANSYS Fluent, the TR of four cells in series was simulated and validated with Jun Wu et al.'s experimental data, achieving an error margin below 10%. Peak temperatures reached 1,126°C in the first cell, with delayed propagation in adjacent cells. Sensitivity analysis of voltage, current, and state of charge (SOC) under varying C-rates was performed using a multi-scale multi-domain (MSMD) battery model. A logarithmic voltage …

Uncovering Weaknesses In Autonomous Driving: A Formal Approach To Adversarial Scenario Generation And Falsification, Carlos O. Hernandez

Master's Theses

Autonomous vehicles utilize advanced safety features like proactive driving assistance and pre-collision alerts to minimize the risk of accidents. However, evaluating the correct functionality of these systems is complex. First, safety systems are highly sophisticated, integrating software, networking, and hardware components, many of which rely on advanced artificial intelligence and machine learning algorithms. Second, an array of dynamic factors, including numerous actors and physical variables, can influence the performance of safety mechanisms during critical scenarios. Each actor’s unique behavior introduces unpredictability, making it difficult to anticipate future states and outcomes. This thesis presents a comprehensive framework for testing autonomous vehicle …

Assessing Sediment Migration And Salmonid Habitat Recovery Following A Small Dam Removal And A Flood, Mill Creek, California, Usa, Madeline C. Doyle

Master's Theses

In 2021, the lower Mill Creek Dam (~4 m tall, ~8 m wide) was removed from the Mill Creek-San Vicente Creek watershed (18 km2), located in the Santa Cruz Mountains. Topographic surveys and pebble counts were performed at 27 transects four times between 2021 and 2023 to compare changes in channel characteristics and grain size to document the response to a small dam removal and the transition between drought and flood conditions. The goals of this study were to: (1) describe the movement of impounded sediment; (2) assess the success of habitat restoration for two endangered anadromous fish species: coho …

The Nature And Role Of Health Laws In The Writings Of Ellen G. White, Lehel Somogyi

Master's Theses

The Topic

Since the founding of their denomination, Seventh-day Adventists have advocated a particular concept of health based on the visions and writings of denominational co-founder Ellen G. White (1827–1915). According to her writings, certain natural laws are crucial for maintaining health. These laws are often called “the laws of health” or “the eight laws of health” and include principles such as diet, exercise, water, temperance, and hygiene. In Seventh-day Adventist circles, Ellen G. White is usually perceived as the originator of these health principles. Some scholars suggest that she simply borrowed her health principles from other contemporary health reformers. …

Optimizing Field-Linked Simulations Of Dry Season Uptake And Monsoon Infiltration Within An Aspen-Mixed Conifer Forest, Raymond J. Hess

Master's Theses

Climate models forecast that headwater catchments in the western U.S. will undergo a reduction in snowpack, early season snowmelt, and increases in evapotranspiration. The resulting extended dry season will stress vegetation in mountainous watersheds throughout the Upper Colorado River Basin. We investigate infiltration patterns and root water uptake in response to dry season disturbances within the East River watershed in Colorado. To do this, we collected soil cores, measured matric potential and sap flow, and monitored tree xylem and soil for stable isotopes of water (2H, 18O) in two soil profiles to 90 cm depth (with three Engelmann spruce and …

Covalent Inhibition Of Enzyme Sortase A As A New Pathway Against Bacterial Resistance Of Staphylococcus Aureus, Umyeena Bashir

Master's Theses

The continued rise of antibiotic-resistant bacteria, such as MRSA (methicillin-resistant Staphylococcus aureus), has made the discovery of novel antibiotics critical. While bacteriostatic and bactericidal antibiotics inevitably exert evolutionary pressure on bacteria to develop resistance, small molecules that target mechanisms of bacterial virulence present a promising alternative for treatment. Sortase A (Srt A), a cysteine protease of S. aureus, promotes bacterial virulence by covalently attaching proteins such as pilin to the bacterial surface, enabling bacterial adhesion to mammalian cells. Inhibitory studies of this enzyme have gained prominent interest as a new pathway for drug development since blocking this enzyme's ability to …

Evaluation Of Polyvinyl Alcohol (Pva) For Electrospinning Utility In The Blood Vessel Mimic (Bvm) Lab, Logan Vandenbroucke

Master's Theses

Electrospinning has provided the opportunity to create extracellular matrix (ECM) mimicking scaffolds for the development of tissue-engineered constructs. Within Professor Kristen Cardinal’s Blood Vessel Mimic (BVM) Lab, at Cal Poly, there exists a constant demand for innovation and the expansion of polymer types and electrospinning capabilities for its BVM model. Along these lines, the BVM Lab has recently acquired two new electrospinning systems: the Spinbox, a commercially graded electrospinning system, and the Learn-By-Doing system, which was part of a recently completed thesis conducted by Jason Provol. Additionally, recently published literature has demonstrated polyvinyl alcohol (PVA) as a viable option for …

Optimization Of Hydraulic Cylinder Positioning For Wind Tower Hydraulic Erection System, Anbesh Rawal

Master's Theses

Wind produced electricity is a rapidly growing field with wind towers serving as critical components. Conventionally, special cranes are commonly used for wind tower erection. This study explores the use of hydraulic cylinders for small-scale wind tower erection. The thesis aims to find the optimal position of hydraulic cylinder connections in a hydraulic erection system for safe and energy-efficient tower erection and retraction and to enhance the performance and longevity of the system.

Structural analysis was conducted to investigate various hydraulic cylinder positioning configurations, ensuring minimal force exertion while maintaining structural integrity. The study included the selection of locally available …

Perturbation Based Decomposition For Motor Unit Number Estimation, Anna T. Pham

Master's Theses

Motor unit number estimation (MUNE) is of clinical significance because information associated with motor unit populations and the loss of motor units over time are crucial to the diagnosis and monitoring of neuromuscular disorders. The responses of individual motor units can be extracted through incremental stimulation of a muscle group of interest and further analyzed through various methods to compute the MUNE. In this work, the utility of the perturbation-based decomposition by Szlavik will be investigated for this application and compared to the original MUNE approach developed by McComas. Successful decomposition may suggest an alternative method for motor unit number …

Decentralized Machine Learning On Blockchain: Developing A Federated Learning Based System, Nikhil Sridhar

Master's Theses

Traditional Machine Learning (ML) methods usually rely on a central server to per-
form ML tasks. However, these methods have problems like security risks, data
storage issues, and high computational demands. Federated Learning (FL), on the
other hand, spreads out the ML process. It trains models on local devices and then
combines them centrally. While FL improves computing and customization, it still
faces the same challenges as centralized ML in security and data storage.

This thesis introduces a new approach combining Federated Learning and Decen-
tralized Machine Learning (DML), which operates on an Ethereum Virtual Machine
(EVM) compatible blockchain. The …

Nanoparticles And The Environment: Biopolymer Grafted Cellulose And Screen-Printed Carbon Nanotube Composites, Dominique Henry Porcincula

Master's Theses

A host of environmental issues will define the state of the environment in the 21^st century, with plastic pollution and water shortages among them. While solutions to these problems require large-scale, multipronged solutions, one way we can address them is through material innovation and the use of nanoparticles.

In the first project, we address the issue of plastic pollution by creating nanocomposites of biodegradable polymers (PLA and PCL) with cellulose nanofibrils. Here, PLA and PCL are grafted from the surface of cellulose nanofibrils via ring-opening polymerization of cyclic ester monomers. Polymer-grafted cellulose (PGC) is characterized with structural analysis, solubility …

Brain Dance And Brain Power: Impact Of Movement On Problem-Solving Skills For Exceptional Learners, Kristin Crain

Master's Theses

The goal of this research was to answer the question: Q1 In what ways do Brain Dance type movements impact problem-solving skills for exceptional learners? The research was completed within the public education setting with a group of volunteer participants including one cooperating teacher and six student participants identified as exceptional learners. The researcher focused on problem-solving skills including identifying a problem, showing work, implementing a solution, and identifying a solution. Research instruments were created based on these skills including a pretest, posttest, and teacher rubric. Student participants completed the pretest prior to being introduced to movement exercises. The researcher …

Rhythm And Meter As Text Expression: Jake Runestad's "Come To The Woods", Samantha Brewer

Master's Theses

Core to Western music education curriculum is the teaching and history of “word painting,” or text expression particularly as it pertains to the sixteenth-century madrigal. This approach to text expression is explored primarily through the lens of melodic and harmonic movement through a vocal line and the manner in which the line allows for better portrayal of the text or poem. The purpose of this thesis is to take a new approach to text expression in contemporary choral literature through the viewpoint of rhythm and meter. In this thesis, various analytical techniques from decades past and present are applied to …

Using Behavior Bingo To Increase Academically Engaged Behavior In A General Education Elementary School Population, Faith Elizabeth Hamilton

Master's Theses

Spending instructional and work time addressing disruptive behaviors in the classroom is a common complaint of many teachers. The literature suggests that group contingencies are beneficial for improving behavior on a classwide and individual level. The current study investigated Behavior BINGO, a group contingency intervention whose research is in its infancy, and its effectiveness on increasing academically engaged behaviors and decreasing disruptive behaviors on a classwide basis. This study utilized a nonconcurrent multiple baseline design in three 2^nd grade, general education classrooms in a public school.

Estimation Of Angular Response Curves Using A Phase Differencing Bathymetric Sonar, Kandice Gunning

Master's Theses

Although Multibeam Echosounders (MBES) backscatter products like Angular Response Curves (ARC) and mosaics have been used and applied to different sediment types as classification tools, little is known about the extraction and interpretation of ARCs using Phase Differencing Bathymetric Sonar Systems (PDBS). This thesis aims to use an across-track approach to develop a method for extracting ARCs from georeferenced bathymetric data using PDBS.

Three different data collection surveys were conducted using a PDBS operating at 540kHz. Using only the bathymetric data, initial ARCs from 3 different intensity classes (high, medium, and low) were successfully extracted, the results of which attempted …

Polluting The Senses: The Impact Of Noise And Light Pollution On Fledgling Movement And Evolution Within The Avian Eye, Margaret C. Mackinlay

Master's Theses

There is more human-generated noise and light today than ever before, a trend tied to ongoing urbanization and with reverberating impacts on a wide range of organisms. While research on these impacts is mounting and particularly plentiful when it comes to birds, there is still much to explore within its effects on avian behavior, fitness, and evolution. In chapter 1, we investigated how fledgling movement is influenced by noise and light pollution. While adult birds have well-documented species-specific responses to these stimuli, fledglings are sorely understudied in this context. We experimentally manipulated light levels and took advantage of an existing …

An Ecological Assessment Of An Endangered Lichen From Central California: Sulcaria Isidiifera, The Splitting Yarn Lichen, Elijah C. Balderas

Master's Theses

Lichens are an underrepresented group of organisms when it comes to both research and conservation efforts. At the same time, lichens face increasing threats from anthropogenic sources including wildfires, climate change and urbanization. With this thesis, I seek to ascertain and publish ecological data on a critically endangered lichen to inform future conservation designations and efforts to preserve and protect the species in perpetuity.

In Chapter 1, I provide an ecological overview of the known range of Sulcaria isidiifera and assess the status of Sulcaria isidiifera via a population count. Sulcaria isidiifera occurs in maritime chaparral habitat in the Los …

Complex Dimensions Of 100 Different Sierpinski Carpet Modifications, Gregory Parker Leathrum

Master's Theses

We used Dr. M. L. Lapidus's Fractal Zeta Functions to analyze the complex fractal dimensions of 100 different modifications of the Sierpinski Carpet fractal construction. We will showcase the theorems that made calculations easier, as well as Desmos tools that helped in classifying the different fractals and computing their complex dimensions. We will also showcase all 100 of the Sierpinski Carpet modifications and their complex dimensions.