Digital Commons Network^™

Material Differences In Equine Cortical And Trabecular Bone, Ryan B. Allen

Master's Theses

A greater understanding of bone materials would be beneficial in creating more accurate computer models and in the making of biomedical products involving bone. This study set out to determine whether cortical and trabecular bone are two separate materials, or whether they are the same material with a variance in porosity. To answer this question, samples were taken from different sections of the equine metacarpus, underwent densitometry analysis and were statistically analyzed. The majority of results suggest that the material is the same between varying densities of bone and thus the same between cortical and trabecular bone. These particular results …

Characterization Of Changes In Composition And Physicochemical Properties Of Casein Micelles From Raw Milk To Buttermilk, Melissa Ann Looney

Master's Theses

It is well-documented that buttermilk has poor coagulation properties due to changes that occur to the casein micelles during the butter-making process. These modifications are generally attributed to the pasteurization of the cream upon which interactions between the proteins are promoted. It was hypothesized that churning is also a critical step for the changes that occur in composition of the casein micelles. The objective of this work was to learn more about the interactions that occur between casein micelles and MFGM components during the butter making process.

Raw cream was processed using a rotary churn at 18°C for approximately 30 …

Evaluation Of Red Alder Mortality In The Little Creek Watershed Following The 2009 Lockheed Fire, Dylan Robert Theobald

Master's Theses

Five hundred eighty red alder along a 2.16 km portion of the Little Creek riparian zone were assessed for mortality following the 2009 Lockheed Fire near Davenport, California. The study area was divided into burn severity zones and every red alder within the riparian zone was observed and assessed for mortality. Height, diameter at breast height (DBH), and age were collected on selected trees. An estimation of red alder large woody debris (LWD) input to Little Creek since a 2010 LWD survey (Smith, 2010) was calculated using average red alder tree dimensions applied to Smalian’s formula (MLNRO, 2011). The mean …

Territorial Behavior And Cortical Brain Plasticity In Adult Male Sceloporus Occidentalis, Daniel R. Pfau

Master's Theses

The hippocampus is a brain region that can undergo tremendous plasticity in adulthood. The hippocampus is related to the formation of spatial memories in birds and mammals. In birds, plasticity in the hippocampus occurs when formation of such memories is directly relevant to survival or reproduction, such as for breeding or food caching. In reptiles, the homologues to the hippocampus are the dorsal and medial cortices (DC and MC). In several lizard, snake and turtle species, these structures have been related to spatial memory. Experimental investigations indicate that differences in DC volume are related to space use associated with differing …

The Ecological Effects Of Cattle Grazing On Reptiles And Small Mammals In A San Joaquin Valley Grassland, Michael William Tom

Master's Theses

Livestock grazing is a common and extensive land use practice in the United States occurring in a wide range of habitat types. As such, livestock grazing has the potential to alter ecosystem structure, function and community composition. The primary component (Chapter 1) of this thesis examined the effects of cattle grazing in a San Joaquin Valley grassland on two target taxa: reptiles and small mammals. The study took place on the Chimineas Unit of the Carrizo Ecological Reserve, San Luis Obispo County, California during Fall 2009 and Spring 2010. These taxa were sampled on matched pairs of two grazed and …

Plant Invasion Along An Urban-To-Rural Gradient, Carolyn O. Ariori

Master's Theses

Humans are the most important drivers of invasive species introduction and natural habitat transformation globally. Ecological differences between areas of dense human habitation and minimally managed natural habitats were explored across an urban-to-rural gradient of land use in southern New England. These differences were examined through presence/absence and leaf functional traits for a set of invasive species; and urban and rural environmental conditions. Some species were more restricted to particular sites than others along the urbanization gradient, based on introduction history and habitat preference. A priori urban-classified species showed trait values associated with drought tolerance, including higher LWR, greater leaf …

Roubaud's Circus: Playing With Words And Animals In Les Animaux De Tout Le Monde, Miranda R. Mueller

Master's Theses

It is commonly held that there is a solid, defined line existing between men and animals. This thesis explores the ideological boundary and, through a close examination of Jacques Roubaud’s collection of poetry Les animaux de tout le monde, imagines the line as a fluid structure that can be broken, approached, and multiplied.

In a circus theme following the playful style of Roubaud’s own verses, I include several close readings of poems as well as an analysis of Roubaud’s influence from Lewis Carroll’s nonsense genre, the Fables of Jean de la Fontaine, and Medieval bestiaries in order to create a …

Child Abuse Reporting: When Given The Option, Do Youth Choose To Report?, Michelle L. Vos

Master's Theses

Christensen and Prout (2002) explain, "The task of the social scientist is to work for the right of people to have a voice and to be heard. In the case of children, `age' is perhaps one of the most dominant factors used to discriminate against children being heard and listened to" (p. 483). And in the case of children experiencing neglect or abuse, the opportunity for them to be heard is even more limited. This project analyzes data from the National Runway Safeline - one place where children's voice can be heard. NRS, established in 1971, offers confidential and anonymous …

Proteomic Analysis Of Mammary Epithelial Cell Development, Alyssa Kay Conly

Master's Theses

In this set of studies, a proteomic approach was used to investigate the protein profile of the mammary epithelial cell (MEC) through different stages of mammary development. The HC11 cell line was used to investigate protein changes between undifferentiated and differentiated MEC, which represent the pregnant and lactating states of the cells. This comparison revealed an interesting differential expression profile underscoring many recognized processes that occur in differentiated MECs, while others unveiled differences between MEC differentiation in vitro and in vivo. Primary MEC were also isolated from virgin, pregnant, and primiparous quiescent mice to compare the virgin state of the …

Watch The Sky, Kelly Ann Curtis

Master's Theses

Watch the Sky is a coming of age novel that follows a young man named Eddie Leland. Sixteen-year-old Eddie lives in an isolated part of Southern Oregon. His father is dead and his mother, torn with grief, is unable to contribute to Eddie's development into manhood. For two years, Eddie has had one true companion, his father's hunting dog. When the dog is violently killed by his mother's boyfriend and his mother's life is threatened, Eddie takes drastic measures to preserve what is left of his family. As a result, Eddie must flee the only life he has ever known. …

Hittingtime And Pagerank, Shanthi Kannan

Master's Theses

In this thesis, we study convergence of finite state, discrete, and time homogeneous Markov chains to a stationary distribution. Expressing the probability of transitioning between states as a matrix allows us to look at the conditions that make the matrix primitive. Using the Perron-Frobenius theorem we find the stationary distribution of a Markov chain to be the left Perron vector of the probability transition matrix.

We study a special type of Markov chain &mdash random walks on connected graphs. Using the concept of fundamental matrix and the method of spectral decomposition, we derive a formula

that calculates expected hitting times …

The Excavation And Analysis Of Prehistoric Caribbean Remains: A Bioarchaeological Case Study Of A Prehistoric Female From Nevis, West Indies, Chris Keith

Master's Theses

ABSTRACT:

The Excavation and Analysis of Prehistoric Caribbean Remains: A Bioarchaeological Case Study of a Prehistoric Female from Nevis, West Indies

By Chris Keith

In the summer of 2011, the remains of a 1000 year old indigenous Caribbean woman were discovered buried on a beach near White Bay, Nevis, West Indies. The following summer, a team of excavators and osteologists, including the author, returned to Nevis to excavate and analyze the remains with the intention to learn as much as possible about the remains and, through proxy, the people to whom they belonged. We felt that through our investigations of …

Coast Redwood Community Structure And Composition Following Selective-Harvest: A Case Study Of Byrne-Milliron Forest, Amy K. Petersen

Master's Theses

The effects of selective-harvest on forest composition and structure in the southern range of the coast redwood (Sequoia sempervirens) forest have not been well documented. This case study was focused on the Byrne-Milliron Forest located in Santa Cruz County, where selective-harvest is currently the primary method of timber extraction. The purpose of this research was to determine how forest structure and composition changed in relation to time since the last harvest re-entry, the percentage cut per hectare and number of harvest re-entries. The study design consisted of 100 plots located within the Byrne-Milliron Forest, spanning over five harvest …

Using Vegetation To Reduce Nitrogen Runoff In California Caneberries, Rebecca Riesenfeld

Master's Theses

With a 700% rise in global fertilizer use in the last 50 years, agricultural lands are a significant source of nitrogen and phosphorus pollution in aquatic ecosystems worldwide. Record high levels of nitrate-contaminated runoff from agricultural sources in California's Central Coast are affecting drinking water supplies in the Pajaro Valley and increasingly threatening the ecological health of the Monterey Bay. Bands of vegetation strategically planted to control runoff and soil erosion, or vegetative filter strips (VFS), are used in urban landscapes and at some farm peripheries. On-farm vegetative diversity has been promoted for its contribution to biodiversity and pest control. …

Covert Visual Spatial Attention: Effects Of Voluntary And Involuntary Attention On Channel Enhancement And Channel Selection, Rocio Luna

Master's Theses

The ability to fixate ones eyes on one object while attending to another object is known as covert visual attention. The present study investigated the effects of covert visual attention on reaction time (RT) and accuracy while manipulating cue types (i.e., informative and non-informative) and validity (i.e., valid and invalid) in two experiments. The results of the RT experiment revealed a main effect of validity and an interaction between cue types and cue validity. However, there was no main effect of attention type. The results of the Accuracy experiment were very similar; there was a main effect of validity but …

A Promiscuous Wallflower: The Rare Zayante Sandhills Endemic Erysimum Teretifolium (Brassicaceae) Benefits From Outcrossing, Miranda Kathleen Melen

Master's Theses

The Zayante sandhills ecosystem of Santa Cruz County, California, contains a rich mosaic of plants and animals adapted to unusual soils and microclimates. In this environment, local adaptation of populations is expected to lead to greater endemism and outbreeding depression. Anthropogenic fragmentation has further isolated populations, however, which paradoxically could result in inbreeding depression. One of these plants, Erysimum teretifolium (Ben Lomond wallflower) is an endangered endemic herb in the Brassicaceae family. This study assessed genetic mixing across remnant patches of E. teretifolium in order to estimate the effects of fragmentation and the reliance on pollinators. A captive breeding colony …

The Effects Of "Stress Inoculation" On Anxiety-Related Behaviors In A Rodent Model, Rebecca Ruth Clouse

Master's Theses

Problem. Humans may face psychological stressors in their everyday life due to their ability to contemplate future events. While long-term stress exposure may be detrimental to health, this study examines the possibility that exposure to unpredictable/controllable, moderate stress may cause resilience against future stressors. This is referred to as the "stress inoculation hypothesis." The effects of unpredictable/controllable stress can be illustrated as a rightward shift in an inverted U-shaped curve, where optimal performance (the top of the curve) can be maintained at higher stress levels. -- Method. Thirty-three male Sprague-Dawley rats were tested on the elevated-plus maze (EPM) for trait …

The Architecture Of Tell Jalul, Carina De Oliveira Prestes

Master's Theses

The Problem. Buildings excavated in Tell Jalul have been studied separately for the last twenty years. However, until the present moment, no comprehensive study has been conducted. Therefore, this thesis will discuss the architecture of the main edifications found in Tell Jalul from 1992 to 2012. -- The Method. For this project, the ruins found in fields A, B, C, D, G and W were considered. First, a literature review was done to find similar structures in Jordan and the neighboring areas and their basic features. Then, a three-dimensional reconstruction of the ruins was suggested. The reconstruction was made in …

Identification Of Clinical Markers That Predict The Outcomes Of Methicillin-Resistant Staphylococcus Aureus Infections And Identification Of Synergistic Antibiotic Combinations For The Treatment Of These Infections, Virginia Long

Master's Theses

Methicillin-resistant Staphylococcus aureus(MRSA) is a prominent nosocomial infection. Vancomycin is the mainstay of treatment, but it has a high rate of failure. Combination therapies can be used, but synergy is often not tested in clinical laboratories. Physicians are at a disadvantage because they cannot predict MRSA outcomes. The first aim of the study was to identify clinical and demographic markers that could predict infection recurrence or prolonged bacteremia. This was accomplished using retrospective chart review and statistical analysis. The second aim of the study was to identify which combinations, of those commonly used for MRSA treatment at Loyola, demonstrate the …

Elucidating The Transcriptional Regulation Of Col2a1a In Zebrafish, Sonja Dabizljevic

Master's Theses

Cartilage is an important tissue in vertebrates beginning in the early embryo where it lays down the scaffolding for the skeleton, and continuing through adulthood where it makes up joints and intervertebral disks. The major component of cartilage is a filamentous protein known as Collagen type II, alpha 1 (Col2a1). Mutations in col2a1 in humans can lead to multiple congenital disorders and the early onset of joint and retinal deterioration. Our laboratory is interested in understanding the conserved transcriptional regulation of this critical structural gene utilizing the zebrafish, Danio rerio. Previously, we identified a 310 bp regulatory region (R2) 1.7 …

Environmental Drivers Of Leaf Breakdown Rate In An Urban Watershed, Ashley Rachelle Cook

Master's Theses

Leaf litter breakdown is a critical ecosystem process in urban streams, but environmental conditions in urban streams may generate confounding effects on breakdown rates. Reduced abundance of macroinvertebrate shredders may slow breakdown, but rates may increase if high nutrient concentrations stimulate microbial decomposers and if flooding enhances leaf fragmentation. We used the litter bag technique to measure the relative importance of multiple environmental drivers on breakdown of eastern cottonwood (Populus deltoides) leaves at 5 sites throughout the North Branch of the Chicago River watershed. Sites spanned a gradient of urbanization, but no specialized macroinvertebrate shredders were present at any sites. …

Role Of The Intestinal Microbiota In Gut Barrier Dysfunction Following Burn Injury, Zachary Earley

Master's Theses

Burn injury represents a major medical problem with half a million cases requiring medical attention and 4,000 deaths reported annually. Sepsis and multiple organ failure remain the leading causes of death following injury, and may be brought on by bacterial infections or toxins. The gastrointestinal tract contains approx. 100 trillion microbes; therefore, the indigenous commensal microbiota may play a role in leading to these complications or infections in burn patients. The overall objective of this project is to identify a potential mechanism whereby changes in gut bacteria may lead to intestinal inflammation or bacterial translocation--key factors which may lead to …

Life Histories, Diets, And Secondary Production Of Odonata Along A Temperature Gradient On The Copper River Delta, Alaska, Nicole Emilie Furlan

Master's Theses

Dragonflies (Odonata: Epiprocta) and damselflies (Odonata: Zygoptera) are a conspicuous aspect of the biota in ponds on southcentral Alaska's Copper River Delta (CRD). Odonate densities, secondary production, and diets were assessed in sixteen ponds classified by delta region (east vs. west) and landscape type (outwash plain (OP) vs uplifted marsh (UM)).

Enallagma boreale (Coenagrionidae) comprised 48.5% of collected odonates. Leucorrhinia hudsonica (Libellulidae) and Aeshna juncea (Aeshnidae) comprised 36.6% and 10.4% of collected odonates, respectively. L. hudsonica densities and secondary production were significantly higher (p<0.001) in west UM ponds than in other pond types. Ostracods (Ostracoda) and water boatmen (Corixidae) dominated west OP A. juncea diets. Midge larvae (Chironomidae) dominated A. juncea diets in remaining pond types, occurring in 68% of foreguts. 27% of A. juncea foreguts demonstrated intraguild predation, and 6% of foreguts demonstrated cannibalism. Foreguts containing threespine stickleback (Gasterosteus aculeatus) revealed A. juncea's apex predator role in CRD ponds.

Reconsidering The Model Of Trim5Α Assembly: The Role Of The Linker2 (L2) Region In Trim5Α Assembly, Laura Johnsen

Master's Theses

The TRIM5α protein from rhesus macaques (TRIM5αrh) exhibits a remarkable ability to potently inhibit infection by Human Immunodeficiency Virus Type-1 (HIV-1). Extensive studies have shown that TRIM5α is capable of self-associating at many levels, eventually leading to the formation of a hexameric assembly that can superimpose on the hexameric lattice of the HIV-1 capsid. The mechanism underlying the self-association of TRIM5α and the molecular determinants of self-association remain to be completely understood. In this study, we show that the Linker 2 (L2) region of TRIM5rh is important for dimerization and higher order self-association, both of which are independent processes. Additionally, …

History Of Freshwater Invasions In Illinois: Learning From The Past To Inform The Future, Abigail Jacobs

Master's Theses

Rates of introduction and spread of non-native species continue to increase worldwide, with freshwater ecosystems highly impacted. Many non-native species crossed between the Great Lakes and Mississippi watersheds by traveling through waterways in Illinois. I assembled a comprehensive database of occurrences of aquatic non-native species (n=99) in Illinois inland waters. The arrival of non-native species accelerated since 1873. The Great Lakes Basin was the main source of established species into Illinois. From 1990-2012 the dominant vector was unintentional release of established species non-native to North America. Sixty of the 99 introduced species established. Eighteen established species had high or very …

Effects Of Instruction And Parent-Child Conversation On Children's Stem Learning And Transfer, Maria Marcus

Master's Theses

This study examined the effects of direct instruction and parent-child conversation on children's STEM learning, transfer abilities, and remembering. A total of forty mothers and their 5- to 6-year-old children (M = 5.87) participated in this study. Mother-child dyads were randomly assigned to one of two conditions that differed in the amount of engineering information they received prior to engaging in a building activity in a museum exhibit. The provision of engineering information fostered dyads building activities and their long-term recall of the museum visit. Implications for museum research and practice are discussed.

An Investigation Of The Role Of Vibrio Vulnificus Rbda And Vibrio Parahaemolyticus Sypa In Biofilm Formation, Cecilia Thompson

Master's Theses

Vibrio vulnificus and Vibrio parahaemolyticus are both bacteria that cause human infection. V. vulnificus has a polysaccharide locus, rbd, responsible for bacterial aggregation, a form of biofilm. This locus is conserved in V. parahaemolyticus and in the non-pathogen V. fischeri.

In V. fischeri, the polysaccharide locus, syp, has been extensively characterized and shown to be important for biofilm formation. In V. fischeri, the first gene, sypA, is critical for biofilm formation. V. fischeri biofilm-proficient strains form wrinkled colonies. In contrast, sypA mutants form smooth colonies, indicating a lack of biofilm formation.

To understand the function of RbdA and SypAVP, proteins …

A Study Of Functional Recovery And Axonal Plasticity Following Tbi And Anti-Nogo-A Immunotherapy, Jennifer Crystal Biesiadecki

Master's Theses

Traumatic brain injury (TBI) is a leading cause of morbidity and mortality globally and often results in long term disability. Unfortunately, the success of rehabilitation techniques as therapy for TBI is limited, which may be due to the growth restrictive environment of the adult central nervous system (CNS). This environment is thought to result from glial scars, lack of neurotrophic factors, and the presence of an array of growth-inhibitory molecules. One such growth-inhibitory molecule is the protein Nogo-A. Our laboratory has shown that neutralization of Nogo-A with anti-Nogo-A immunotherapy after ischemic stroke results in improvement in functional recovery in the …

Turn Of Events: How Environmental Temperatures And Artificial Nest Habitats Influence Incubation Behaviors Of Cassin's Auklets (Ptychoramphus Aleuticus), Emma Kelsey

Master's Theses

Nest attendance behaviors are critical to hatching success for most bird species. Yet, details of avian incubation behaviors are still not well understood, especially for species that nest in burrows and crevices. Cassin's auklet (Ptychoramphus aleuticus) is a burrow-nesting seabird found throughout the northeastern Pacific Ocean, including Southeast Farallon Island, California (SEFI). Artificial nest boxes have been used to monitor Cassin's auklets (hereafter auklet) breeding on SEFI. Temperatures in un-shaded nest boxes can increase significantly during extreme heat events. The effects of these elevated temperatures on auklet incubation behaviors and egg viability are not clear. In this study, egg data …

The Effects Of Post-Operative Analgesics On Ovarian Surface Angiogenesis After Transplantation Of Young Ovaries Into Aged Mice, Christine Petrovec

Master's Theses

The formation of new blood vessels from pre-existing vasculature, termed angiogenesis, is essential for tissue viability and continuous organ function after murine ovary allotransplantation. Interference with the process of angiogenesis can result in cellular injury and tissue necrosis in the transplanted ovarian tissue. Although recommended, the use of analgesics for post-operative pain management has been shown to alter angiogenesis and could negatively affect transplanted ovarian tissue viability. The present study evaluated the effects of two analgesics, the opiate buprenorphine and the non-steroidal anti-inflammatory drug meloxicam, on superficial ovarian vessel formation after the transplantation of young ovaries into aged mice. One-Way …