Digital Commons Network^™

The Endurance Of Tell Qarqur: Settlement Resilience In Northwestern Syria During The Late Bronze And Iron Ages (Ca. 1200 – 700 Bc), Eric Robert Jensen

Graduate Theses and Dissertations

This dissertation analyzes the material culture, paleobotanical, and faunal remains excavated at the site of Tell Qarqur, Syria, recovered from occupational levels dating from the end of the Late Bronze Age to the Iron II period (from approximately 1200 to 700 BC). Based on archaeological evidence and ancient textual sources, many ancient Near Eastern kingdoms and polities endured social and political turmoil during the late 13th and early 12th centuries BC. Most likely caused by an unknown hostile group or groups, the destruction of monumental scale architecture and the disruption to the people of Qarqur’s agricultural and animal husbandry practices …

Genetic And Genomic Analyses Of Bacterial Responses To Different Stress Environments, Sakshi Rampal

Graduate Theses and Dissertations

Bacteria encounter a plethora of environmental stresses and have evolved different mechanisms to recognize and respond to various harmful conditions. Understanding and elucidating common themes as well as unique aspects of the molecular mechanisms underlying stress adaptation is important and can provide valuable strategies for applications. This study focuses on stress responses in three different bacteria, namely, Acidothermus cellulolyticus, Mycobacterium smegmatis and Escherichia coli. The thermophilic and acidophilic organism A. cellulolyticus was used as a model system to understand the effects of lignin phenolic acids on cellulolytic bacteria. Lignin phenolic acids pose a significant challenge to microbial deconstruction of lignocellulosic …

Influence Of Loss Of Function Of The Fatty Acid Desaturase 7 Gene On Photosynthetic Activity And Foliar Redox Status, Janithri Savindya Wickramanayake

Graduate Theses and Dissertations

Fatty Acid Desaturase7 (FAD7) is a chloroplast-localized enzyme that converts 16 and 18 carbon dienoic fatty acids to trienoic fatty acids. The suppressor of prosystemin-mediated response2 (spr2) mutant in tomato (Solanum lycopersicum) and the fad7-1 mutant in Arabidopsis (Arabidopsis thaliana) result in the loss of function of FAD7, which alter the fatty acid profiles of chloroplast membranes and enhance resistance against aphids. This research contributes toward the long-term goal of identifying factors that determine aphid resistance in FAD7 mutants. Previous data suggested constitutive differences between spr2 and WT including increased expression of genes associated with photosynthesis and differences in redox …

Classifying Interdependencies In The Food And Agriculture Critical Infrastructure Sector, John Doerpinghaus

Graduate Theses and Dissertations

This work classifies examples of infrastructure interdependencies found in the food and agriculture critical infrastructure sector. Interdependencies are identified through an examination of rice and poultry agriculture throughout the state of Arkansas. The subtleties of interdependence examples in the food and agriculture sector are inadequately captured by the well-studied interdependence classification taxonomies. Through 39 interviews, we develop an understanding of the subtle temporal, geographic, and productivity scales of interdependence in over 100 examples and present five new, distinct classifications of interdependence: (1) dynamic physical, (2) dynamic geographic, (3) deadline, (4) delay, and (5) human, economic, and natural resource interdependencies. An …

Development Of A Methodology For Predicting Consumer Acceptance And Preference Toward Beverages, Shilpa Shailesh Samant

Graduate Theses and Dissertations

Consumer behavior toward food/beverages is influenced by multisensory attribute perceptions as well as emotional experiences. Traditional methods of sensory testing lack the ability to capture emotional responses and as a result, measuring food/beverage-evoked emotions remains a research challenge. There were three objectives of this dissertation study. Firstly, this study aimed to develop prediction models of acceptance of and preference for basic taste solutions using sensory attribute intensities and emotional responses. Secondly, this study aimed to extend the findings of the first objective to develop prediction models of commercially-available vegetable juice products in terms of (a) acceptance and preference under blind-tasting …

Evaluation Of Genetic And Environmental Influences On Broiler Meat Quality, Sara Katherine Orlowski

Graduate Theses and Dissertations

The effect of both genetic and environmental influences on broiler meat quality were evaluated over three experiments. Selection response was assessed for broiler lines selected for high (HBY4) and low (LBY4) four day percentage breast yield which were formed from a random bred control (RAN). A modern random bred population (MRB) created in 2015 was evaluated for differences in 4 day percentage breast yield and the resulting differences in the incidence and severity of the woody breast and white striping myopathies. Additionally, the use of embryonic thermal manipulation to impact cell division and early caloric feed restriction to slow growth …

Assessment Of Soil Properties And Vegetation In A Mounded Native Tallgrass Prairie With An Aquic And Udic Soil Moisture Regime In The Ozark Highlands Region Of Northwest Arkansas, Tyler Joseph Durre

Graduate Theses and Dissertations

Native tallgrass prairies were once considered to be the dominant pre-settlement vegetation type in the eastern third of the Great Plains, but are now designated as America’s most endangered ecosystem due to conversion to agricultural land. Prairie mounds are unique soil features still present in remnant native tallgrass prairies across the United States. The main objective was to determine the effects of soil moisture regime (i.e., aquic and udic), mound position, (i.e., mound summit, backslope, toeslope, inter-mound), soil depth (i.e., 10-cm intervals from 0 to 90 cm), and their interactions on soil physical, chemical, and hydraulic properties in a mounded …

Budget-Constrained Regression Model Selection Using Mixed Integer Nonlinear Programming, Jingying Zhang

Graduate Theses and Dissertations

Regression analysis fits predictive models to data on a response variable and corresponding values for a set of explanatory variables. Often data on the explanatory variables come at a cost from commercial databases, so the available budget may limit which ones are used in the final model.

In this dissertation, two budget-constrained regression models are proposed for continuous and categorical variables respectively using Mixed Integer Nonlinear Programming (MINLP) to choose the explanatory variables to be included in solutions. First, we propose a budget-constrained linear regression model for continuous response variables. Properties such as solvability and global optimality of the proposed …

Physiological Characterization Of The Soynam Parental Lines Under Field Conditions, Akshita Mishra

Graduate Theses and Dissertations

The narrow genetic pool of soybean (Glycine max L. Merr.) in North America can limit its future yield gains. Among the worldwide germplasm collection of 45,000 unique landraces, only 80 contribute 99% to the collective parentage of North American soybean cultivars. Among these 80 landraces, just 17 contribute to 86% of the collective parentage of the modern cultivars. The Soybean Nested Association Mapping population (SoyNAM) was therefore developed with the objective of diversifying the soybean gene pool. Forty diverse soybean genotypes from maturity groups (MG) 1 through 5 were crossed with a common MG 3 parent to develop 40 recombinant …

Microbiota Metabolic Product Deoxycholic Acid Prevents Campylobacter Jejuni Chicken Colonization Through Modulating Ceca Anaerobes, Bilal Ali Alrubaye

Graduate Theses and Dissertations

Campylobacter jejuni is a prevalent infectious enteritis mainly foodborne from chickens. Despite of reducing C. jejuni food contamination dramatically decreases campylobacteriosis, few effective approaches are available for the bacterial reduction in chickens. The aim of this study was to use microbial metabolic product deoxycholic acid (DCA) to reduce C. jejuni chicken colonization. Broiler chicks were fed 0 or 1.5 g/kg DCA, lithocholic acid (LCA), or urodeoxycholic acid (UDCA) in diets or orally gavaged with cholic acid (CA, 1.5g/kg body weight). Birds were also transplanted with DCA modulated anaerobes (DCA-Anearo) or aerobes (DCA-Aero). Birds were infected with 109 CFU/bird human clinical …

Ca2+ - Induced Structural Change Of Multi-Domain Collagen Binding Segments Of Collagenases Colg And Colh From Hathewaya Histolytica, Christopher Eric Ruth

Graduate Theses and Dissertations

Hathewaya histolytica, previously renamed as Clostridium histolyticum, secretes at least two collagenases, ColH and ColG, that allow for degradation of extracellular matrices of animal tissue. Hathewaya histolytica virulence factors are proposed to undergo domain rearrangement upon secretion from the bacteria to the host. In order to accomplish this, collagenases seek the least ordered regions in collagen to efficiently disassemble the fibril. Two types of domains, Polycystic Kidney Disease-like (PKD) and Collagen Binding Domain (CBD), direct the collagenases ability to disassemble the fibril. Calcium dependent structural change have been reported to increase in thermal stability and in tighter collagen binding for …

Spatio-Temporal Reconstruction Of Remote Sensing Observations, Kamrul Khan

Graduate Theses and Dissertations

The USDA Forest Service aims to use satellite imagery for monitoring and predicting changes in forest conditions over time within the country. We specifically focus on a 230, 400 hectares region in north-central Wisconsin between 2003 - 2012. The auxiliary data collected from the satellite imagery of this region are relatively dense in space and time and can be used to efficiently predict how the forest condition changed over that decade. However, these records have a significant proportion of missing values due to weather conditions and system failures. To fill in these missing values, we build spaciotemporal models based on …

The Persistence Of The Past Into The Future: Indigenous Futurism And Future Slave Narratives As Transformative Resistance In Nnedi Okorafor's The Book Of Phoenix, Ellen Eubanks

Graduate Theses and Dissertations

In recent years, a number of authors have written science fiction works that express the concerns and experiences of marginalized people groups, including those in postcolonial societies, Indigenous/First Nations peoples, and other racial minorities. These works provide counter narratives to that of much canonical science fiction, which developed from narrative forms that often explicitly and implicitly supported colonial ideologies, and still often includes these ideologies today. This thesis analyzes the way The Book of Phoenix (2015) by the NigerianAmerican speculative fiction author Nnedi Okorafor uses a combination of the forms of Indigenous futurism and what Isiah Lavender terms meta-slavery narratives …

Spotted Wing Drosophila (Drosophila Suzukii) In Arkansas: Winter Morphs, Wild Hosts, And Fungal Control, Rosalee Knipp

Graduate Theses and Dissertations

Drosophila suzukii (Matsumura), or spotted wing drosophila (SWD), is an invasive fruit fly pest that was first found in the United States in 2008. Unlike native Drosophila, SWD females have a serrated ovipositor that allows them to attack ripening fruit. Since its introduction, it is unclear how and where they overwinter in Arkansas, what local hosts they utilize and what potential alternative tactics can be used to combat this pest. In states north of Arkansas, winter morphs (WM) of SWD are larger, darker pigmented, and can survive colder temperatures than SWD flies found in the summer. These WM were found …

Evaluation Of Soybean Maturity Group And Planting Date In A Soybean-Rice Rotation On Overall Crop Productivity, Carrie Ortel

Graduate Theses and Dissertations

Little is known about the effects of soybean (Glycine max L.) management techniques on soil-nitrogen (N) credit development and its impact on the subsequent rice (Oryza sativa L.) crop’s success. This study was conducted to determine how soybean maturity group (MG) and planting date effect overall soybean productivity and its influence on the following rice crop. Various soybean planting dates (optimum and late) and MGs (3.5, 4.7, 5.4, and 5.6) were grown and followed in rotation with a rice crop. Six rates of pre-flood fertilizer-N (0, 44, 89, 134, 179, 224 kg N ha-1) were applied to the rice crop. …

Efficacy Of Natural Compounds With Novel Carrier Systems For Controlling Campylobacter Jejuni In Post-Harvest Poultry, Sandip Shrestha

Graduate Theses and Dissertations

Campylobacter jejuni, a leading cause of bacterial gastroenteritis worldwide, is strongly associated with the consumption and/or mishandling of raw contaminated poultry products. Thus, interventions aiming to reduce C. jejuni counts on poultry products could greatly reduce the incidence of human campylobacteriosis. In the first study, the efficacy of a generally recongnized as safe (GRAS) compound, carvacrol (CR; derived from oregano oil), as an antimicrobial wash treatment to reduce C. jejuni on chicken skin was evaluated. Three delivery systems of CR: suspension, emulsion and nanoemulsion were used. C. jejuni counts were reduced up to 4 log10 cfu/sample by 2% dose of …

Evaluating Climate Change Policy Through The Endangered Species Act, Richie Donahou

Graduate Theses and Dissertations

This research sets out to address a growing knowledge gap of climate change science in regards to the state of Arkansas. Within the coming chapters, the goal of this research is to examine climate data and to identify if any evidence of climate change can be detected and what are the policies in place to adapt to these potential changes. Furthermore, the scope of this research will be narrowed to a few counties over the southwest Arkansas, and a specific endangered species, the Leopard Darter. Upon examination of previous environmental and ecological climate change related research it became clear that …

Characterization Of A Variant Of Tuberous Sclerosis Complex 2 And Its Interaction With Rheb, Sowmya Sivakumar

Graduate Theses and Dissertations

Protein-protein interactions are vital in maintaining proper function and homeostasis in cells. Some signaling pathways are regulated by G-proteins that work like switches to activate and deactivate pathways. Mutations in these proteins, their effectors or the interaction between proteins may cause dysregulation of signals that can lead to many diseases.

Rheb, Ras homology enriched in brain, is a Ras family GTPase that is vital in regulation of the mTOR (mammalian target of rapamycin) pathway that signals cell proliferation and growth. Due to the low intrinsic GTPase activity of Rheb, a GTPase activating protein (GAP), Tuberous Sclerosis Complex 2 (TSC2) down …

Anti-Inflammatory Activity Of Phenolic And Volatile Compounds In Cranberries (Vaccinium Macrocarpon L), Katherine Moore

Graduate Theses and Dissertations

The primary objective of this study was to compare the anti-inflammatory effects of phenolic and volatile compounds extracted from cranberries. The Griess Reagent System assay was used to measure the in vitro anti-inflammatory capabilities of cranberry phenolic and volatile extracts on RAW 264.7 mouse macrophage cells. This study tested the anti-inflammatory capabilities of the cranberry phenolic and volatile extracts before, as a preventative treatment, and after, as a means of treating pre-existing inflammation, inducing inflammation with lipopolysaccharide (LPS). All experiments were conducted in the following manner, varying only in whether treated with the extracts before or after LPS: 1 x …

A Multimodal Assessment Of Disgust In Response To Traumatic Event Reminders Among Adolescents, Teah-Marie R. Bynion

Graduate Theses and Dissertations

The majority of youth will report traumatic event exposure by the time they reach adulthood. Research suggests exposure to such events is linked to myriad negative outcomes. Not all traumatic events are alike, however; evidence suggests that, compared to non-interpersonal events, interpersonal events in which another person intentionally perpetrates harm are linked to elevations in the likelihood of negative outcomes, including posttraumatic stress disorder (PTSD). One reason for this discrepancy is that interpersonal traumatic events may elicit greater levels of disgust. However, this is a very under-developed research base, no study has examined this question among youth. The current study …

Anti-Inflammatory Effect Of Berry Essences, Inah Gu

Graduate Theses and Dissertations

Inflammation is one of defense reactions of our body tissues against harmful stimuli such as infection and tissue injury. However, it has been reported that chronic inflammation can lead to chronic inflammatory diseases including diabetes, cardiovascular diseases and cancer. This transition from acute to chronic inflammation state is usually induced by pro-inflammatory mediators and cytokines including nitric oxide (NO), prostaglandin E2 (PGE2), interleukin-1β (IL-1β), interleukin-6 (IL-6), and tumor necrosis factor-α (TNF-α), which accelerate the development of other chronic diseases. Accordingly, targeting these pro-inflammatory factors is one of the important roles for anti-inflammatory agents. For last two decades, researches about anti-inflammatory …

Bioavailability Of Bioactive Compounds, Wing Shun Lam

Graduate Theses and Dissertations

Arachidin-1 (Ara-1) and arachidin-3 (Ara-3) are stilbenoids found in hairy peanut roots, which have been shown to possess similar, if not higher, efficacy in biological activities when compared to nonprenylated analogs such as piceatannol and resveratrol. Blackberry essences are concentrated volatiles, which are characterized by low molecular weight, lipophilic properties, and have also been demonstrated to have health benefits. As interest in dietary bioactive compounds functional ingredients increase, more emphasis has been placed on identifying which compounds have high efficacy as well as bioavailability. The ability of a compound to exert its health promoting effects depends on its bioavailable dose, …

Genomic Approaches To Identify Important Traits In Avian Species, Bhuwan Khatri

Graduate Theses and Dissertations

This dissertation focusses on identifying different molecular markers that have impact on overall poultry production. Chapter one reviews microRNA (miRNA), copy number variation (CNV) and single nucleotide polymorphism (SNP) as markers suggested in different avian species by various studies. It reviews modern genomic approaches that are employed for next generation sequencing data analysis and verification.

Chapter two seeks to identify and validate the muscle specific miRNAs in the breast muscle of modern broilers and its foundational chicken line. Small RNA sequencing was performed to identify differentially expressed mature miRNAs in the breast muscles of these two chicken lines. Results showed …

Assessment Of A Nutritional Rehabilitation Model In Two Modern Broilers And Their Jungle Fowl Ancestor: A Model For Better Understanding Childhood Undernutrition, Mikayla Baxter

Graduate Theses and Dissertations

The World Health Organization, estimated that 22.9% of children under the age of 5 are stunted. The etiology of stunting is multifactorial and is associated with poor linear growth, villous atrophy, dysbiosis, and increased intestinal permeability. Inclusion of rye in poultry diets induces nutrient deficiencies and increases intestinal permeability, dysbiosis and decreases growth rates. The objective of this dissertation was to determine if chickens consuming a rye based diet exhibited a similar pathophysiology of stunted children to develop a relevant animal model. Therefore, early or late phase malnutrition was induced determine the effects of malnutrition on performance, bone mineralization, intestinal …

Molecular Survey For The Honey Bee Trypanosome Parasites Crithidia Mellificae And Lotmaria Passim, Mary-Kate Williams

Graduate Theses and Dissertations

Honey bee populations have been fluctuating within recent years. No one cause has been attributed to colony fluctuations due to the theory that multiple stressors interact with one another to impact colony health. Consequently, microorganisms such as internal parasites of honey bees have been understudied as a contributor to colony health decline.

Molecular diagnostics were utilized to detect the presence of two honey bee trypanosome parasites, Crithidia mellificae and Lotmaria passim, in managed and feral honey bee populations from eight states in the United States (USA). Because studies on trypanosome infections are lacking in the USA, it is important to …

Effect Of Grain Sorghum Polyphenols On Fecal Fermentation, Danielle Marie Ashley

Graduate Theses and Dissertations

Obesity is an increasing epidemic which during 2015-2016 afflicted 39.8% of adults and 18.5% of youth in the United States. Not only can obesity affect quality of life, but it can lead to life-threatening diseases such as type 2 diabetes, heart disease, stroke, and some cancers. Animal and human research have demonstrated a pattern of gut microbiota perturbation in overweight and obesity, characterized by a reduction of beneficial bacterial species and increase in harmful species. Diet has been established as a contributing factor in gut ecology, and foods including fiber, resistant starch, and polyphenols have been found to both enhance …

Effects Of Serving Temperature On Sensory Perception And Acceptance Of Brewed Coffee, Matthew James Chapko

Graduate Theses and Dissertations

Coffee continues to be one of the most widely consumed beverages worldwide. How an individual perceives a cup of coffee is impacted by a plethora of factors including origin, growing climate, roasting level, and consumption habits. This thesis utilized both trained descriptive panelists and untrained consumer panelists to analyze how serving/consumption temperature modulates sensory perception of brewed coffee in regards to appearance, aroma, flavor, taste, and mouthfeel. Three varieties of coffee (Colombia, Ethiopia, and Kenya) were brewed and served to panelists at four temperatures: 70, 55, 40, and 25 °C. In one study (Study 1, Chapter 3), results from descriptive …

Long-Term Focus Of Attentional Biases, Garrett Pollert

Graduate Theses and Dissertations

Prior research regarding attentional biases, or patterns of visual attention, have focused on attention over the initial second when exposed to pictoral food stimuli. This manuscript reviews the literature regarding attentional biases in overweight/obese individuals over this timeframe for the two previously defined components of attentional bias (attentional orientation and attentional maintenance). A new component is proposed, called “attentional re-engagement,” defined as the pattern of attentional shifts towards target stimulus types over longer periods of time. Overweight/Obese and Normal-weighted participants were recruited and engaged in an Extended Dot Probe task, wherein attentional orientation, maintenance, and re-engagement were assessed using the …

Evaluation Of A Solar Powered Variable Flow Tail Water Recovery System For Furrow Irrigation, Vaishali Kandpal

Graduate Theses and Dissertations

Furrow irrigation is a very common irrigation method for growing crops like soybean, cotton and corn in Arkansas. A major portion of this irrigation water is lost as runoff from the field significantly reducing the irrigation application efficiency. There are various methods of improving irrigation efficiency and one of the methods is using tail-water recovery. A tail-water recovery system utilizes tail-water recovery ditches or pits to collect tail-water which can be re-used for irrigation. However, this method is very labor intensive and has been found to be economically non-feasible for some farms in the past research studies. In order to …

Factors Driving Sugar Cane Production In The Kingdom Of Eswatini, Brooke Danielle Anderson

Graduate Theses and Dissertations

Sugar cane is the largest industry in Eswatini with 16 percent of the total workforce working directly or indirectly in the sugar industry. Like all agricultural industries the sugar industry in Eswatini is heavily dependent on an abundant labor supply and climatic conditions. Labor efficiency and abundance is a defining factor of food security and profitability in Eswatini, having one of the highest national HIV/AIDS rates in the world. Small-scale sugar cane producers are often the hardest hit by HIV/AIDS as they traditionally rely on family labor more than hired labor. The 2016 Eswatini Vulnerability Assessment Report indicated that over …