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Genomic Inference Of Inbreeding In Alexander Archipelago Wolves (Canis Lupus Ligoni) On Prince Of Wales Island, Southeast Alaska, Katherine Emily Zarn

Graduate Student Theses, Dissertations, & Professional Papers

Habitat loss and climate change are increasingly resulting in reduction and fragmentation of wildlife populations. Populations that have experienced fragmentation and decreases in abundance are at heightened risk of inbreeding due to reduced opportunities to mate with unrelated conspecifics. Prolonged or extensive inbreeding can result in inbreeding depression via the exposure of deleterious alleles in long runs of homozygosity. Alexander Archipelago wolves (Canis lupus ligoni) on Prince of Wales Island (POW) in Southeast Alaska are a small, isolated population of conservation concern that have experienced habitat loss and high harvest rates, and present an ideal system in which …

Utilization Of Various Methods And A Landsat Ndvi/Google Earth Engine Product For Classifying Irrigated Land Cover, Andrew Nemecek

Graduate Student Theses, Dissertations, & Professional Papers

Methods for classifying irrigated land cover are often complex and not quickly reproducible. Further, moderate resolution time-series datasets have been consistently utilized to produce irrigated land cover products over the past decade, and the body of irrigation classification literature contains no examples of subclassification of irrigated land cover by irrigation method. Creation of geospatial irrigated land cover products with higher resolution datasets could improve reliability, and subclassification of irrigation by method could provide better information for hydrologists and climatologists attempting to model the role of irrigation in the surface-ground water cycle and the water-energy balance. This study summarizes a simple, …

The Impact Of Salient Naming Targets During Aphasia Therapy, Kathy Kay Molesh, Catherine Off Ph.D., Craig Mcfarland Ph.D., Jenna Griffin M.S.

Graduate Student Theses, Dissertations, & Professional Papers

Translational research has led to aphasia therapies that incorporate principles of experience dependent neuroplasticity. The neuroplasticity principle of salience has received less attention from speech language pathologists than other principles, such as dose and treatment intensity. Incorporating salience in aphasia therapies has the potential to increase functional outcomes by addressing multiple aspects of the World Health Organization’s International Classification of Functioning, Disability and Health. This study explored the impact of salient stimuli targets on picture naming acquisition and maintenance for two individuals with chronic aphasia, following cerebrovascular accident. Participants were enrolled in a five-week Intensive Comprehensive Aphasia Program (ICAP) at …

Dna Analysis On Ceramic Cooking Vessels, Britney J. Radford

Graduate Student Theses, Dissertations, & Professional Papers

Ceramic vessels are a durable material found in abundance throughout the archaeological record. Organic residue analysis has been used to study ceramic vessels utilizing lipid analysis and protein analysis. Lipids and proteins analysis provide limited information at the genus level, leaving out valuable information that species-specific results can tell us such as unique genetic and environmental information. Lipids and proteins analysis provide limited information at the genus and taxonomic levels leading to issues of misclassification of species. If only certain animals or plants of a genus are being used, then unique genetic and environmental information found only at the species …

New, Multi-Scale Approaches To Characterize Patterns In Vegetation, Fuels, And Wildfire, Christopher Jacob Moran

Graduate Student Theses, Dissertations, & Professional Papers

Pattern and scale are key to understanding ecological processes. My dissertation research aims for novel quantification of vegetation, fuel, and wildfire patterns at multiple scales and to leverage these data for insights into fire processes. Core to this motivation is the 3-dimensional (3-D) characterization of forest properties from light detection and ranging (LiDAR) and structure-from-motion (SfM) photogrammetry. Analytical methods for extracting useable information currently lag the ability to collect such 3-D data. The chapters that follow focus on this limitation blending interests in machine learning and data science, remote sensing, wildland fuels (vegetation), and wildfire. In Chapter 2, forest canopy …

Reconnecting Indigenous Knowledge To The Sunlight Basin: Integrating Traditional Ecological Knowledge And Archaeology, Liz Dolinar

Graduate Student Theses, Dissertations, & Professional Papers

Traditional ecological knowledge (TEK) specific to plants has been developed over long-term connections to the environment, diligent observations, and practical experience by Indigenous communities. The traditional ecological knowledge of Indigenous peoples is a vital source for the contextualization and further understanding of past human environmental relationships in the Sunlight Basin of northwestern Wyoming. The Eastern Shoshone people, among many other groups, traditionally occupied the Sunlight Basin of northwestern Wyoming, a region of the Greater Yellowstone Ecosystem. There is a growing necessity for collaboration with Indigenous populations within archaeological and anthropological research. The aim of this project is to develop a …

Protecting Natural Resources On Agricultural Lands: Producers' Perspectives On The Conservation Stewardship Program In Montana, Mary Ellis

Graduate Student Theses, Dissertations, & Professional Papers

Industrial agricultural production contributes to some of the most significant environmental problems in the United States today. Scientists have identified agricultural production as a primary cause for the decline of native species, soil degradation, and water pollution in the U.S. In response to this crisis, grassroot organizations crafted, and got Congress to pass, the Conservation Stewardship Program (CSP), a federal program aimed to incentivize producers to increase on-farm conservation practices. CSP is designed to serve as a space for producers to gain access to financial and technical support, test out new practices, and provide a platform to discuss best practices …

Shaping The Tools Of Battle : Sexual Selection, Contest Dynamics, And Weapon Divergence In The Asian Rhinoceros Beetle Trypoxylus Dichotomus, Jillian F. Del Sol

Graduate Student Theses, Dissertations, & Professional Papers

Exaggerated weapons of sexual selection often diverge more rapidly and dramatically than other body parts, suggesting that relevant agents of selection may be discernible in contemporary populations. I examined the ecology, reproductive behavior, and strength of sexual selection on horn length in five recently diverged beetle populations that differ in relative horn size. I show that mating system ecology differs between these locations and corresponds with the local strength of contemporary selection on horn length. Comparisons of ecological conditions and selection strength across populations offer a critical first step towards meaningfully linking mating system dynamics, selection patterns, and diversity in …

Zero-Knowledge De Novo Algorithms For Analyzing Small Molecules Using Mass Spectrometry, Patrick Anthony Kreitzberg

Graduate Student Theses, Dissertations, & Professional Papers

In the analysis of mass spectra, if a superset of the molecules thought to be in a sample is known a priori, then there are well established techniques for the identification of the molecules such as database search and spectral libraries. Linear molecules are chains of subunits. For example, a peptide is a linear molecule with an “alphabet” of 20 possible amino acid subunits. A peptide of length six will have 20⁶ = 64, 000, 000 different possible outcomes. Small molecules, such as sugars and metabolites, are not constrained to linear structures and may branch. These molecules are …

Blasting The Farm: Chemical High Explosives And The Rise Of Industrial Agriculture, 1867-1930, Patrick Benjamin Swart

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Adaptation To A Geothermal Soil Mosaic Shapes Genome-Wide Patterns Of Diversity And Differentiation In Yellowstone Monkeyflowers (M. Guttatus), Kory M. Kolis

Graduate Student Theses, Dissertations, & Professional Papers

Local adaptation across habitat mosaics can generate phenotypic divergence in the face of gene flow; however, adaptive divergence in reproductive traits may also create barriers to genetic exchange within and among distinct habitats. In plants, life-history, phenology, and mating system traits may lead to divergent selection over short (microgeographic) spatial scales. Changes to these traits are likely to directly affect patterns of gene flow and genomic diversity. In this study, we combined field, common garden, and population genomic approaches to investigate phenotypic and genetic variation in Mimulus guttatus (yellow monkeyflowers) adapted to a complex geothermal soil mosaic in Yellowstone National …

Use Of Computer Software To Do Mathematics And The Mathematics Achievement Of Students In Puerto Rico Using Restricted 2015 Naep, Ricela Feliciano-Semidei

Graduate Student Theses, Dissertations, & Professional Papers

This quantitative study explored the relationship between the mathematics achievement patterns of eighth grade students in Puerto Rico and their use of computer software application programs for doing mathematics. The theoretical framework used is the educational production function, which allowed the use of a function to analyze this relationship. The researcher analyzed 2015 restricted National Assessment of Educational Progress (NAEP) mathematics data. Data analysis consisted of descriptive statistical analysis and multilevel modeling analysis. Control variables to measure socioeconomic status and absenteeism were included in the multilevel model. Results of this study showed that average scores on NAEP 2015 were higher …

Characterization Of Novel Cyp26b1-Inhibitor, Dx314, For The Treatment Of Keratinization Disorders, Joachim Gwenn-Stephan Veit

Graduate Student Theses, Dissertations, & Professional Papers

Our skin, particularly the barrier provided by the epidermis, functions as our primary protection from the harsh environment. It protects us from dangerous pathogens, allergens, ultraviolet radiation, and mechanical injury, as well as playing a major role in fluid and thermal regulation. Disruption of skin functions can lead to life-threatening consequences due to increased risk of infection, trans-epidermal water loss, and allergen sensitization. Many common skin disorders often result in a disrupted skin barrier placing patients at risk of complications.

Retinoic acid (RA) is a major component of the vitamin A pathway, which critically controls multiple skin functions including cell …

Bone Stress Injuries In Collegiate Distance Runners: Review Of Incidence, Distribution, And Risk Factors, Maryn E. Lowry

Graduate Student Theses, Dissertations, & Professional Papers

This literature review investigates the risk factors for bone stress injuries that apply to collegiate distance runners. Collegiate distance runners demonstrate high incidence rates of this type of injury and can suffer from a loss of training time. It is important to review the risk factors that apply to these athletes in order to mitigate the time lost to injury and optimize training. PubMed and Google Scholar were searched for original articles pertaining to risk factors associated with bone stress injuries and/or stress fractures. Results from these original articles demonstrate that this injury has many risk factors including biomechanical, biological, …

Probing Denatured State Conformational Bias In 3-Helix Bundles With Foldable Or Intrinsically Disordered Domains, Moses Joseph Leavens

Graduate Student Theses, Dissertations, & Professional Papers

Protein misfolding is associated with several life threatening diseases – Alzheimer’s, Parkinson’s, Cystic fibrosis, Sickle cell anemia, and the Transmissible spongiform encephalopathies, to include Chronic Wasting disease, Scrapie, and Creutzfeldt-Jakob disease. To provide insight into protein misfolding, it is beneficial to understand how an amino acid sequence encodes structure. Once thought to behave as random coil polymers under denaturing conditions, an abundance of recent evidence suggests denatured proteins retain ‘non-random’ or residual structure, which may bias a protein chain to fold efficiently to its native conformer. Probing energetics of residual structure in denatured proteins is challenging, given the shortage of …

Adaptation Under The Canopy: Coffee Cooperative And Certification Contributions To Smallholder Livelihood Sustainability In Santa Lucía Teotepec, Oaxaca, Meghan C. Montgomery

Graduate Student Theses, Dissertations, & Professional Papers

The collapse and reorganization of global coffee markets associated with the “coffee crisis” have had profound, negative impacts on smallholder producer livelihoods throughout the world. In Mexico, the collapse of the International Coffee Agreement (ICA) coincided with withdrawal of government support for agriculture, which devastated producers dependent on coffee for their livelihoods. Smallholders responded by shifting livelihood strategies to diversify income, migrating, and converting primary forest cover to subsistence crops and pasture to support household livelihood security. In some instances, producers also joined or formed cooperative organizations to access specialty certifications that offer higher priced markets, extension information, and other …

Modulation Of Cytochrome C’S Peroxidase Activity By Ω-Loops C And D In Monomers And Dimers, Haotian Lei

Graduate Student Theses, Dissertations, & Professional Papers

Mitochondrial cytochrome c is a heme containing protein with flexible heme ligation. Cytochrome c in its native state with Met80 bound to the heme is an electron shuttle in the electron transport chain. Under apoptotic stimuli, cytochrome c oxidizes the mitochondrial lipid cardiolipin, leading to the release of pro-apoptotic factors into the cytoplasm. To oxidize cardiolipin, Met80 in Ω-loop D must be dissociated from the heme iron, which allows cytochrome c to obtain access to alternative conformers. Two segments of cytochrome c, namely Ω-loops C and D, have been suggested to be important in regulating the dissociation of Met80. Unlike …

Pragmatist Ecological Economics: Focusing On Human-Nature Relationships And Social-Ecological Systems, Christopher Aden Armatas

Graduate Student Theses, Dissertations, & Professional Papers

I propose pragmatist philosophy as a companion for ecological economics, a research tradition with a focus on addressing sustainability issues and integrating ecological principles, economics, and the broader social sciences. Ecological economics laudable goals include balancing competing values, tradeoffs, and insights for more equitable decision-making. However, the field is built upon somewhat tenuous philosophical and theoretical foundations, which has resulted in a muddled body of literature, concerns about relativistic science, and questions about the future viability of the field. To address such concerns, I propose and articulate pragmatist ecological economics. Generally, joining pragmatism and ecological economics provides established beliefs about: …

Missoula Prescription Produce Program: Lessons Learned 2015-2017, Harley Fredriksen

Graduate Student Theses, Dissertations, & Professional Papers

The Missoula Fruit and Vegetable Prescription Produce program (MFVPP) started in 2015 as a partnership between Garden City Harvest (a Missoula, MT food-security non-profit) and the Providence Endocrinology Center (a local health clinic focused on diabetes care). MVFPP allows physicians, physician assistants, and dieticians to prescribe fresh produce to their patients. Patients must be of low income and suffer from chronic disease. The purpose of this paper is to evaluate the effectiveness of the MFVPP to lead to improved biometric measurements for patients. This paper also discusses the program’s limitations and complications and aims to chart a path forward for …

Development Of An Open-Source, Custom Environmental Data Logger For Spatially Scalable Data Collection, Tim Anderson

Graduate Student Theses, Dissertations, & Professional Papers

Characterizing the processes that lead to differences in ecosystem productivity and watershed hydrology across complex terrain remains a challenge. This difficulty can be partially attributed to the cost of installing networks of proprietary data loggers that monitor differences in the biophysical factors contributing to vegetation growth or hydrological processes. Studies that aim to compare concurrent time-series data sets across multiple locations must therefore balance the high cost of these data logger systems with the need for spatial resolution in their data. Here, we present the design, implementation, and case study for an open-source “Pinecone” data logger system, released under the …

The Anatomy Of Extinction: Stories Of People As Place, Mason Parker

Graduate Student Theses, Dissertations, & Professional Papers

No abstract provided.

Adaptive Potential To Camouflage Mismatch: Plastic And Evolutionary Responses To A Climate Change Stressor, Marketa Zimova

Graduate Student Theses, Dissertations, & Professional Papers

Animals that occupy temperate and polar regions have specialized traits that help them survive in harsh, highly seasonal environments. One particularly important adaptation is seasonal coat colour (SCC) moulting. Over 20 species of birds and mammals distributed across the northern hemisphere undergo complete, biannual colour change from brown in the summer to completely white in the winter. But as climate change decreases duration of snow cover, seasonally winter white species (including the snowshoe hare Lepus americanus, Arctic fox Vulpes lagopus and willow ptarmigan Lagopus lagopus) become highly contrasted against dark snowless backgrounds. The negative consequences of camouflage mismatch and adaptive …

Effect Of Potato-Based And Prepackaged Sports Supplement Products On Muscle Glycogen Recovery And Exercise Performance In Trained Males And Females, Shannon Kelly Flynn

Graduate Student Theses, Dissertations, & Professional Papers

Purpose

Research has elucidated the impact of post exercise carbohydrate nutrition and environmental conditions on muscle glycogen re-synthesis. However, research has minimally considered the implications of glycogen recovery in females and has focused on commercial sport nutrition products. The purpose of this study was to determine the effects of varied mixed macronutrient feedings on glycogen recovery and subsequent exercise performance in both sexes.

Methods

8 males and 8 females participated in a crossover study. Subjects completed a 90-minute cycling glycogen depletion trial then rested for 4 hours. Two carbohydrate feedings (1.6 g . kg-1) of either sport supplements or potato-based …

Considering Trauma In Autism Spectrum Disorder Diagnostic Evaluations In Children: A Qualitative Inquiry, Kaitlyn Page Ahlers

Graduate Student Theses, Dissertations, & Professional Papers

The pervasiveness of trauma exposure and potential effects on children’s development and both proximal and future health outcomes are well established in the research literature. Importantly, there is increasing recognition that children with disabilities, including autism spectrum disorder (ASD), might be at heightened risk for trauma exposure and trauma-related health outcomes. However, there is a paucity of research on trauma-informed practices with children with ASD, specifically the assessment methods used to evaluate for the presence of trauma exposure and trauma-related sequelae. While there are guidelines for the diagnostic assessment of ASD, there are no known established guidelines or research regarding …

Silicone Wristbands As Passive Samplers For Quantitative Measurement Of Wood Smoke Exposure, Hannah J. Wright

Graduate Student Theses, Dissertations, & Professional Papers

Human exposure to biomass smoke is a health concern worldwide. Although many studies have measured particulate matter in wood smoke as a health concern, exposure to mutagenic and carcinogenic volatile and semivolatile compounds remains understudied. This research introduces a novel method of quantitative measurement of exposure to these compounds using silicone wristbands. The study developed a method to extract analytes of interest from the wristbands and quantify a few volatile organic compounds and polycyclic aromatic hydrocarbons with known ill health effects, and then performed linear regressions between extracted levels and exposure to those analytes using controlled exposure studies. Results indicate …

The Genetic Mechanisms Underlying Pigmentation And Their Evolutionary Importance In Birds, Nicholas David Sly

Graduate Student Theses, Dissertations, & Professional Papers

Integumentary pigmentation is a phenotype of fundamental importance to animals, with major impacts on survival and fitness. Thus, understanding the mechanisms underlying pigmentation can help illuminate general principles about how adaptive variation is generated and maintained in populations. Here, I present a dissertation that is aimed at understanding the developmental, regulatory, and genetic mechanisms that underlie variation in avian plumage color, and their evolutionary importance.

In my first chapter, I addressed how the modular organization of plumage traits may impact their evolution. The production of color in developing feathers is a modular process, with several mechanisms combining to produce the …

Colloidal And Truly Dissolved Metal(Loid)S In Wastewater Lagoons And Their Removal With Floating Treatment Wetlands, Lauren Sullivan

Graduate Student Theses, Dissertations, & Professional Papers

Climate change is predicted to cause continuing declines in late-season streamflow, thus increasing the relative contribution of wastewater effluent to surface water flows. Wastewater effluent represents a critical point source of metal and metalloid contamination to aquatic ecosystems and wastewater lagoons are the most common wastewater treatment system in the rural United States. Although the fraction of total wastewater metals and metalloids in "dissolved" forms (defined here asnm) likely drives the potential for negative effects on receiving waters, this broad operational definition lumps truly dissolved solutes (nm) with small colloids and nanomaterials (1-450 nm; hereafter colloids). This size distinction may …

Assessing The Robustness Of Time-To-Event Abundance Estimation, Kenneth E. Loonam

Graduate Student Theses, Dissertations, & Professional Papers

Abundance estimates can inform management policies and are used to address a variety of wildlife research questions, but reliable estimates of abundance can be difficult and expensive to obtain. For low-density, difficult to detect species, such as cougars (Puma concolor), the costs and intensive field effort required to estimate abundance can make working at broad spatial and temporal scales impractical. Remote cameras have proven effective in detecting these species, but the widely applied methods of estimating abundance from remote cameras rely on some portion of the population being marked or uniquely identifiable, limiting their utility to populations with naturally occurring …

Constructing Distance, Responsibility, And Memory Management Theories: An Anthropological Approach To Death Notification Interactions, Teresa Ann 'Lilly' White

Graduate Student Theses, Dissertations, & Professional Papers

Following a sudden or unexpected death, coroners often communicate the death to the next-of-kin. Death notifications may occur in hospitals, assisted living or dying facilities, homes, offices or workplaces, correctional facilities, schools, or other locations. A death notification has been perceived by outsiders and many researchers as a one-time, unilateral death-telling event. I argue, instead, death notifications are a series of social interactions and processes necessitating multiple actors and mechanisms. The death notification processes begin for the coroner when they are dispatched to a death scene, while the processes begin for the next-of-kin upon the death-telling event. The end is …

Ecological Stoichiometry In Watersheds: From Land To Water In The Qinghai Lake Basin, Ze Ren

Graduate Student Theses, Dissertations, & Professional Papers

We examined the influences of grassland status (as indexed by normalized difference vegetation index, NDVI) on carbon (C), nitrogen (N), and phosphorus (P) concentrations and stoichiometry, nutrient limitation, as well as microbial community structure in soil, stream, and/or lake ecosystems in the Qinghai Lake watershed, where grassland is the dominant landcover and more than half of the grassland is degraded.

Chapter 2 showed that grassland degradation decreased C and N concentrations as well as C:N, C:P, and N:P ratios in soil. Moreover, grassland degradation decreased C, N, and P concentrations and influenced C:N and N:P ratios in soil microbial biomass. …