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Predictability Of Helminth Parasite Host Range Using Information On Geography, Host Traits And Parasite Community Structure, Tad Dallas, Andrew W. Park, John M. Drake Feb 2017

Predictability Of Helminth Parasite Host Range Using Information On Geography, Host Traits And Parasite Community Structure, Tad Dallas, Andrew W. Park, John M. Drake

Faculty Publications

© Cambridge University Press 2016. Host-parasite associations are complex interactions dependent on aspects of hosts (e.g. traits, phylogeny or coevolutionary history), parasites (e.g. traits and parasite interactions) and geography (e.g. latitude). Predicting the permissive host set or the subset of the host community that a parasite can infect is a central goal of parasite ecology. Here we develop models that accurately predict the permissive host set of 562 helminth parasites in five different parasite taxonomic groups. We developed predictive models using host traits, host taxonomy, geographic covariates, and parasite community composition, finding that models trained on parasite community variables were …


Why Do Plants Need So Many Cyclin-Dependent Kinase Inhibitors?, Narender Kumar, John C. Larkin Feb 2017

Why Do Plants Need So Many Cyclin-Dependent Kinase Inhibitors?, Narender Kumar, John C. Larkin

Faculty Publications

© 2017 Taylor & Francis Group, LLC. Cell cycle regulation is fundamental to growth and development, and Cyclin-Dependent Kinase Inhibitors (CKIs) are major negative regulators of the cell cycle. Plant genomes encode substantially more CKIs than metazoan or fungal genomes. Plant CKIs fall into 2 distinct families, KIP-RELATED PROTEINS (KRPs) and SIAMESE-RELATED proteins (SMRs). SMRs can inhibit both S-phase and M-phase CDK complexes in vitro and are transcribed throughout the cell cycle, yet SMRs do not inhibit DNA replication in vivo. This suggests that SMRs must be activated post transcriptionally after the start of S-phase, but the mechanism of this …


Gibberellin Signaling Requires Chromatin Remodeler Pickle To Promote Vegetative Growth And Phase Transitions, Jeongmoo Park, Dong Ha Oh, Maheshi Dassanayake, Khoa Thi Nguyen, Joe Ogas, Giltsu Choi, Tai Ping Sun Feb 2017

Gibberellin Signaling Requires Chromatin Remodeler Pickle To Promote Vegetative Growth And Phase Transitions, Jeongmoo Park, Dong Ha Oh, Maheshi Dassanayake, Khoa Thi Nguyen, Joe Ogas, Giltsu Choi, Tai Ping Sun

Faculty Publications

© 2017 American Society of Plant Biologists. All rights reserved. PICKLE (PKL) is an ATP-dependent chromodomain-helicase-DNA-binding domain (CHD3) chromatin remodeling enzyme in Arabidopsis (Arabidopsis thaliana). Previous studies showed that PKL promotes embryonic-to-vegetative transition by inhibiting expression of seed-specific genes during seed germination. The pkl mutants display a low penetrance of the “pickle root” phenotype, with a thick and green primary root that retains embryonic characteristics. The penetrance of this pickle root phenotype in pkl is dramatically increased in gibberellin (GA)-deficient conditions. At adult stages, the pkl mutants are semidwarfs with delayed flowering time, which resemble reduced GA-signaling mutants. These findings …


Controls On Erosion Patterns And Sediment Transport In A Monsoonal, Tectonically Quiescent Drainage, Song Gianh, Central Vietnam, Tara N. Jonell, Peter D. Clift, Long V. Hoang, Tina Hoang, Andrew Carter, Hella Wittmann, Philipp Böning, Katharina Pahnke, Tammy Rittenour Feb 2017

Controls On Erosion Patterns And Sediment Transport In A Monsoonal, Tectonically Quiescent Drainage, Song Gianh, Central Vietnam, Tara N. Jonell, Peter D. Clift, Long V. Hoang, Tina Hoang, Andrew Carter, Hella Wittmann, Philipp Böning, Katharina Pahnke, Tammy Rittenour

Faculty Publications

© 2016 The Authors. Basin Research © 2016 John Wiley & Sons Ltd, European Association of Geoscientists & Engineers and International Association of Sedimentologists The Song Gianh is a small-sized (~3500 km2), monsoon-dominated river in northern central Vietnam that can be used to understand how topography and climate control continental erosion. We present major element concentrations, together with Sr and Nd isotopic compositions, of siliciclastic bulk sediments to define sediment provenance and chemical weathering intensity. These data indicate preferential sediment generation in the steep, wetter upper reaches of the Song Gianh. In contrast, detrital zircon U-Pb ages argue for significant …


Adaptation To Heat Stress Reduces Phenotypic And Transcriptional Plasticity In A Marine Copepod, Morgan W. Kelly, M. Sabrina Pankey, Melissa B. Debiasse, David C. Plachetzki Feb 2017

Adaptation To Heat Stress Reduces Phenotypic And Transcriptional Plasticity In A Marine Copepod, Morgan W. Kelly, M. Sabrina Pankey, Melissa B. Debiasse, David C. Plachetzki

Faculty Publications

© 2016 The Authors. Functional Ecology © 2016 British Ecological Society Organisms may respond to changing environments through phenotypic plasticity or adaptive evolution. These two processes are not mutually exclusive and may either dampen or strengthen each other's effects, depending on the genetic correlation between trait values and the slopes of their norms of reaction. To examine the effect of adaptation to heat stress on the plasticity of heat tolerance, we hybridized populations of the crustacean Tigriopus californicus that show divergent phenotypes for heat tolerance. We then selected for increased heat tolerance in hybrids and measured heat tolerance and the …


Bacteria Associated With Piezodorus Guildinii (Hemiptera: Pentatomidae), With Special Reference To Those Transmitted By Feeding, Claudia Husseneder, Jong Seok Park, Andrea Howells, Chinmay V. Tikhe, Jeffrey A. Davis Feb 2017

Bacteria Associated With Piezodorus Guildinii (Hemiptera: Pentatomidae), With Special Reference To Those Transmitted By Feeding, Claudia Husseneder, Jong Seok Park, Andrea Howells, Chinmay V. Tikhe, Jeffrey A. Davis

Faculty Publications

The redbanded stink bug, Piezodorus guildinii (Westwood) (Hemiptera: Heteroptera: Pentatomidae), is a rapidly growing pest damaging southern US agriculture. Pentatomid stink bugs are known to vector bacterial, fungal, and viral plant diseases. However, bacteria associated with redbanded stink bugs and their vector potential have not yet been assessed. In this study, we 1) cultured and identified bacteria transmitted by feeding of redbanded stink bug and 2) described bacteria from guts of redbanded stink bug individuals using next-generation sequencing of 16S rRNA genes. Nineteen bacteria transmitted by feeding of redbanded stink bug on soybean agar were isolated and identified via Sanger …


Monitoring Mexican Rice Borer (Lepidoptera: Crambidae) Populations In Sugarcane And Rice With Conventional And Electronic Pheromone Traps, B. E. Wilson, J. M. Beuzelin, M. T. Vanweelden, T. E. Reagan, M. O. Way Feb 2017

Monitoring Mexican Rice Borer (Lepidoptera: Crambidae) Populations In Sugarcane And Rice With Conventional And Electronic Pheromone Traps, B. E. Wilson, J. M. Beuzelin, M. T. Vanweelden, T. E. Reagan, M. O. Way

Faculty Publications

The Mexican rice borer, Eoreuma loftini (Dyar), is a major pest of sugarcane, Saccharum spp., rice, Oryza sativa L., and other graminaceous crops in Texas and Louisiana. The ability of conventional and electronic pheromone traps to monitor E. loftini in sugarcane and rice habitats was evaluated in two separate 2-yr field studies. Bucket traps baited with a synthetic female sex pheromone monitored E. loftini populations in commercial sugarcane fields in Calcasieu and Jefferson Davis Parishes throughout the 2014 and 2015 growing seasons. The number of E. loftini captured differed among months, but not between years or parishes. The percentage of …


Post-Hurricane Successional Dynamics In Abundance And Diversity Of Canopy Arthropods In A Tropical Rainforest, T. D. Schowalter, M. R. Willig, S. J. Presley Feb 2017

Post-Hurricane Successional Dynamics In Abundance And Diversity Of Canopy Arthropods In A Tropical Rainforest, T. D. Schowalter, M. R. Willig, S. J. Presley

Faculty Publications

We quantified long-term successional trajectories of canopy arthropods on six tree species in a tropical rainforest ecosystem in the Luquillo Mountains of Puerto Rico that experienced repeated hurricane-induced disturbances during the 19-yr study (1991-2009). We expected: 1) differential performances of arthropod species to result in taxon- or guild-specific responses; 2) differences in initial conditions to result in distinct successional responses to each hurricane; and 3) the legacy of hurricane-created gaps to persist despite subsequent disturbances. At least one significant effect of gap, time after hurricane, or their interaction occurred for 53 of 116 analyses of taxon abundance, 31 of 84 …


Generalization And Fine Mapping Of European Ancestry-Based Central Adiposity Variants In African Ancestry Populations, S. Yoneyama, J. Yao, X. Guo, L. Fernandez-Rhodes, U. Lim, J. Boston, P. Buzková, C. S. Carlson, I. Cheng, B. Cochran, R. Cooper, G. Ehret, M. Fornage, J. Gong, M. Gross, C. C. Gu, J. Haessler, C. A. Haiman, B. Henderson, L. A. Hindorff, D. Houston, M. R. Irvin, R. Jackson, L. Kuller, M. Leppert, C. E. Lewis, R. Li, L. Le Marchand, T. C. Matise, K. Dh Nguyen, A. Chakravarti, J. S. Pankow, N. Pankratz Feb 2017

Generalization And Fine Mapping Of European Ancestry-Based Central Adiposity Variants In African Ancestry Populations, S. Yoneyama, J. Yao, X. Guo, L. Fernandez-Rhodes, U. Lim, J. Boston, P. Buzková, C. S. Carlson, I. Cheng, B. Cochran, R. Cooper, G. Ehret, M. Fornage, J. Gong, M. Gross, C. C. Gu, J. Haessler, C. A. Haiman, B. Henderson, L. A. Hindorff, D. Houston, M. R. Irvin, R. Jackson, L. Kuller, M. Leppert, C. E. Lewis, R. Li, L. Le Marchand, T. C. Matise, K. Dh Nguyen, A. Chakravarti, J. S. Pankow, N. Pankratz

Faculty Publications

Background/Objectives:Central adiposity measures such as waist circumference (WC) and waist-to-hip ratio (WHR) are associated with cardiometabolic disorders independently of body mass index (BMI) and are gaining clinically utility. Several studies report genetic variants associated with central adiposity, but most utilize only European ancestry populations. Understanding whether the genetic associations discovered among mainly European descendants are shared with African ancestry populations will help elucidate the biological underpinnings of abdominal fat deposition.Subjects/Methods:To identify the underlying functional genetic determinants of body fat distribution, we conducted an array-wide association meta-analysis among persons of African ancestry across seven studies/consortia participating in the Population Architecture using …


The Early Birds And The Rest: Do First Nesters Represent The Entire Colony?, Jón Einar Jónsson, Smári J. Lúðvíksson, Michael D. Kaller Feb 2017

The Early Birds And The Rest: Do First Nesters Represent The Entire Colony?, Jón Einar Jónsson, Smári J. Lúðvíksson, Michael D. Kaller

Faculty Publications

Climate change studies have detected earlier spring arrival of breeding birds. However, first nest dates (date first nests were found), which commonly provide the metric for earlier arrival, can be biased by population size or sampling effort. Our aims were to determine if: 1) first nest dates and median nest date (date when at least 50 % of all females have nested) were equivalent predictors for the spring arrival and 2) first nest date or median nest date were related to nest numbers. We recorded first and median nest dates and nest numbers at the common eider (Somateria mollissima) colony …


Development Of A Combined Osmotic Dehydration And Cryogenic Freezing Process For Minimizing Quality Changes During Freezing With Application To Fruits And Vegetables, Juan Li, Arranee Chotiko, Emmanuel Kyereh, Jie Zhang, Chen Liu, Vondel Vandeker Reyes Ortega, David Bankston, Subramaniam Sathivel Feb 2017

Development Of A Combined Osmotic Dehydration And Cryogenic Freezing Process For Minimizing Quality Changes During Freezing With Application To Fruits And Vegetables, Juan Li, Arranee Chotiko, Emmanuel Kyereh, Jie Zhang, Chen Liu, Vondel Vandeker Reyes Ortega, David Bankston, Subramaniam Sathivel

Faculty Publications

The effect of a combined osmo-dehydro-cryogenic-freezing process on quality characteristics of fruits and vegetables was evaluated. Cut-tomato-pieces were used as a model vegetable to evaluate the process. Tomatoes had 15.74% water loss and 0.22% solids gain after 24 h of osmotic dehydration in a 55% (w/w) maltodextrin solution at 35C, and increased redness was observed in osmotically dehydrated samples with lycopene content of 1244.78 µg/g of dry mass. Under liquid nitrogen cryogenic freezing at −40C osmotic pretreated tomato samples had shorter freezing time (3.13 min) and higher freezing rate (16.53C/min) than untreated samples (4.48 min and 11.58C/min, respectively). Pretreated-thawed tomato …


Patchiness Of Phytoplankton And Primary Production In Liaodong Bay, China, Shaofeng Pei, Edward A. Laws, Haibo Zhang, Siyuan Ye, Hongming Yuan, Haiyue Liu Feb 2017

Patchiness Of Phytoplankton And Primary Production In Liaodong Bay, China, Shaofeng Pei, Edward A. Laws, Haibo Zhang, Siyuan Ye, Hongming Yuan, Haiyue Liu

Faculty Publications

A comprehensive study of water quality, phytoplankton biomass, and photosynthetic rates in Liaodong Bay, China, during June and July of 2013 revealed two large patches of high biomass and production with dimensions on the order of 10 km. Nutrient concentrations were above growth-rate-saturating concentrations throughout the bay, with the possible exception of phosphate at some stations. The presence of the patches therefore appeared to reflect the distribution of water temperature and variation of light penetration restricted by water turbidity. There was no patch of high phytoplankton biomass or production in a third, linear patch of water with characteristics suitable for …


Summer Camp Garden Project: An Opportunity To Grow The Next Generation Of Horticulturists, Carly Gillett, Kathryn Fontenot, Edward Bush, Maud Walsh, Charles Johnson Feb 2017

Summer Camp Garden Project: An Opportunity To Grow The Next Generation Of Horticulturists, Carly Gillett, Kathryn Fontenot, Edward Bush, Maud Walsh, Charles Johnson

Faculty Publications

Agriculture is fundamental to meeting Americans’ basic needs—clothing, housing, and food. As the average farmer’s age increases, there is a need to develop programs to encourage youth to pursue careers in agriculture and become the next generation of farmers. This study developed and implemented a horticultural curriculum focusing on vegetable production at a summer camp setting. Targeted participants were aged 9 to 12 years. Pre- and posttests were given to both the treatment group (campers participating in the victory garden track) and the control group (campers participating in a Wetlands track). The pre-and posttest evaluated campers’ science-based knowledge and confidence. …


Yeast Pro- And Paraprobiotics Have The Capability To Bind Pathogenic Bacteria Associated With Animal Disease, Gabriel A. Posadas, Paul R. Broadway, Justin A. Thornton, Jeffery A. Carroll, Amanda Lawrence, Jimmie R. Corley, Amber Thompson, Janet R. Donaldson Feb 2017

Yeast Pro- And Paraprobiotics Have The Capability To Bind Pathogenic Bacteria Associated With Animal Disease, Gabriel A. Posadas, Paul R. Broadway, Justin A. Thornton, Jeffery A. Carroll, Amanda Lawrence, Jimmie R. Corley, Amber Thompson, Janet R. Donaldson

Faculty Publications

Live yeast probiotics and yeast cell wall components (paraprobiotics) may serve as an alternative to the use of antibiotics in prevention and treatment of infections caused by pathogenic bacteria. Probiotics and paraprobiotics can bind directly to pathogens, which limits binding of the pathogens to the intestinal cells and also facilitates removal from the host. However, knowledge of bacterial binding, specificity, and/or capability is limited with regard to probiotics or paraprobiotics. The goal of this study was to characterize the qualitative and quantitative nature of two Saccharomyces cerevisiae probiotics and three S. cerevisiae paraprobiotics to adhere to thirteen different pathogenic bacteria …


Large-Scale Behavior-Change Initiative For Infant And Young Child Feeding Advanced Language And Motor Development In A Cluster-Randomized Program Evaluation In Bangladesh, Edward A. Frongillo Jr., Phuong H. Nguyen, Kuntal K. Saha, Tina Sanghvi, Kaosar Afsana, Raisul Haque, Jean Baker, Marie T. Ruel, Rahul Rawat, Purnima Menon Feb 2017

Large-Scale Behavior-Change Initiative For Infant And Young Child Feeding Advanced Language And Motor Development In A Cluster-Randomized Program Evaluation In Bangladesh, Edward A. Frongillo Jr., Phuong H. Nguyen, Kuntal K. Saha, Tina Sanghvi, Kaosar Afsana, Raisul Haque, Jean Baker, Marie T. Ruel, Rahul Rawat, Purnima Menon

Faculty Publications

Background: Promoting adequate nutrition through interventions to improve infant and young child feeding (IYCF) has the potential to contribute to child development.

Objective: We examined whether an intensive intervention package that was aimed at improving IYCF at scale through the Alive & Thrive initiative in Bangladesh also advanced language and gross motor development, and whether advancements in language and gross motor development were explained through improved complementary feeding.

Methods: A cluster-randomized design compared 2 intervention packages: intensive interpersonal counseling on IYCF, mass media campaign, and community mobilization (intensive) compared with usual nutrition counseling and mass media campaign (nonintensive). Twenty subdistricts …


Understanding The Department Of Defense's Policy Regarding Transgender Servicemembers, A. Benjamin Spencer Feb 2017

Understanding The Department Of Defense's Policy Regarding Transgender Servicemembers, A. Benjamin Spencer

Faculty Publications

In June 2016, the Secretary of Defense (SECDEF) issued Directive-type Memorandum (DTM) 16-005, "Military Service of Transgender Service Members." This DTM announced that, based on the premise that the "military should be open to all who can meet the rigorous standards for military service and readiness," "transgender individuals shall be allowed to serve in the military." The attachment to the memo declared that servicemembers could no longer be "involuntarily separated, discharged or denied reenlistment or continuation of service, solely on the basis of their gender identity." The core purpose of the new policy was to ensure that transgender persons would …


Mineralizing Filamentous Bacteria From The Prony Bay Hydrothermal Field Give New Insights Into The Functioning Of Serpentinization-Based Subseafloor Ecosystems, Céline Pisapia, Emmanuelle Gérard, Martine Gérard, Léna Lecourt, Susan Q. Lang, Bernard Pelletier, Claude E. Payri, Christophe Monnin, Linda Guentas, Anne Postec, Marianne Quéméneur, Gaël Erauso, Bénédicte Ménez Jan 2017

Mineralizing Filamentous Bacteria From The Prony Bay Hydrothermal Field Give New Insights Into The Functioning Of Serpentinization-Based Subseafloor Ecosystems, Céline Pisapia, Emmanuelle Gérard, Martine Gérard, Léna Lecourt, Susan Q. Lang, Bernard Pelletier, Claude E. Payri, Christophe Monnin, Linda Guentas, Anne Postec, Marianne Quéméneur, Gaël Erauso, Bénédicte Ménez

Faculty Publications

Despite their potential importance as analogs of primitive microbial metabolisms, the knowledge of the structure and functioning of the deep ecosystems associated with serpentinizing environments is hampered by the lack of accessibility to relevant systems. These hyperalkaline environments are depleted in dissolved inorganic carbon (DIC), making the carbon sources and assimilation pathways in the associated ecosystems highly enigmatic. The Prony Bay Hydrothermal Field (PHF) is an active serpentinization site where, similar to Lost City (Mid-Atlantic Ridge), high-pH fluids rich in H2 and CH4 are discharged from carbonate chimneys at the seafloor, but in a shallower lagoonal environment. This study aimed …


Cover Crop Root Contributions To Soil Carbon In A No-Till Corn Bioenergy Cropping System, Emily E. Austin, Kyle Wickings, Marshall D. Mcdaniel, G. Philip Robertson, A. Stuart Grandy Jan 2017

Cover Crop Root Contributions To Soil Carbon In A No-Till Corn Bioenergy Cropping System, Emily E. Austin, Kyle Wickings, Marshall D. Mcdaniel, G. Philip Robertson, A. Stuart Grandy

Faculty Publications

Crop residues are potential biofuel feedstocks, but residue removal may reduce soil carbon (C). The inclusion of a cover crop in a corn bioenergy system could provide additional biomass, mitigating the negative effects of residue removal by adding to stable soil C pools. In a no-till continuous corn bioenergy system in the northern US Corn Belt, we used 13CO2 pulse labeling to trace plant C from a winter rye (Secale cereale) cover crop into different soil C pools for 2 years following rye cover crop termination. Corn stover left as residue (30% of total stover) contributed 66, corn roots 57, …


Metagenomic Identification Of Active Methanogens And Methanotrophs In Serpentinite Springs Of The Voltri Massif, Italy, William J. Brazelton, Christopher N. Thornton, Alex Hyer, Katrina I. Twing, August A. Longino, Susan Q. Lang, Marvin D. Lilley, Gretchen L. Früh-Green, Matthew O. Schrenk Jan 2017

Metagenomic Identification Of Active Methanogens And Methanotrophs In Serpentinite Springs Of The Voltri Massif, Italy, William J. Brazelton, Christopher N. Thornton, Alex Hyer, Katrina I. Twing, August A. Longino, Susan Q. Lang, Marvin D. Lilley, Gretchen L. Früh-Green, Matthew O. Schrenk

Faculty Publications

The production of hydrogen and methane by geochemical reactions associated with the serpentinization of ultramafic rocks can potentially support subsurface microbial ecosystems independent of the photosynthetic biosphere. Methanogenic and methanotrophic microorganisms are abundant in marine hydrothermal systems heavily influenced by serpentinization, but evidence for methane-cycling archaea and bacteria in continental serpentinite springs has been limited. This report provides metagenomic and experimental evidence for active methanogenesis and methanotrophy by microbial communities in serpentinite springs of the Voltri Massif, Italy. Methanogens belonging to family Methanobacteriaceae and methanotrophic bacteria belonging to family Methylococcaceae were heavily enriched in three ultrabasic springs (pH 12). Metagenomic …


Increased C3 Productivity In Midwestern Lawns Since 1982 Revealed By Carbon Isotopes In Amanita Thiersii, Erik A. Hobbie, Brian A. Schubert, Joseph M. Craine, Ernst Linder, Anne Pringle Jan 2017

Increased C3 Productivity In Midwestern Lawns Since 1982 Revealed By Carbon Isotopes In Amanita Thiersii, Erik A. Hobbie, Brian A. Schubert, Joseph M. Craine, Ernst Linder, Anne Pringle

Faculty Publications

How climate and rising carbon dioxide concentrations (pCO2) have influenced competition between C3 and C4 plants over the last 50 years is a critical uncertainty in climate change research. Here we used carbon isotope (δ13C) values of the saprotrophic lawn fungus Amanita thiersii to integrate the signal of C3 and C4 carbon in samples collected between 1982 and 2009 from the Midwestern USA. We then calculated 13C fractionation (Δ) to assess the balance between C3 and C4 photosynthesis as influenced by mean annual temperature (MAT), mean annual precipitation over a 30 year period (MAP‐30), and pCO2. Sporocarp Δ correlated negatively …


Applying Population And Community Ecology Theory To Advance Understanding Of Belowground Biogeochemistry, Robert W. Buchkowski, Mark A. Bradford, A. Stuart Grandy, Oswald J. Schmitz, William R. Wieder Jan 2017

Applying Population And Community Ecology Theory To Advance Understanding Of Belowground Biogeochemistry, Robert W. Buchkowski, Mark A. Bradford, A. Stuart Grandy, Oswald J. Schmitz, William R. Wieder

Faculty Publications

Approaches to quantifying and predicting soil biogeochemical cycles mostly consider microbial biomass and community composition as products of the abiotic environment. Current numerical approaches then primarily emphasise the importance of microbe–environment interactions and physiology as controls on biogeochemical cycles. Decidedly less attention has been paid to understanding control exerted by community dynamics and biotic interactions. Yet a rich literature of theoretical and empirical contributions highlights the importance of considering how variation in microbial population ecology, especially biotic interactions, is related to variation in key biogeochemical processes like soil carbon formation. We demonstrate how a population and community ecology perspective can …


Wind Wave Behavior In Fetch And Depth Limited Estuaries, Arash Karimpour, Qin Chen, Robert R. Twilley Jan 2017

Wind Wave Behavior In Fetch And Depth Limited Estuaries, Arash Karimpour, Qin Chen, Robert R. Twilley

Faculty Publications

Wetland dominated estuaries serve as one of the most productive natural ecosystems through their ecological, economic and cultural services, such as nursery grounds for fisheries, nutrient sequestration, and ecotourism. The ongoing deterioration of wetland ecosystems in many shallow estuaries raises concerns about the contributing erosive processes and their roles in restraining coastal restoration efforts. Given the combination of wetlands and shallow bays as landscape components that determine the function of estuaries, successful restoration strategies require knowledge of wind wave behavior in fetch and depth limited water as a critical design feature. We experimentally evaluate physics of wind wave growth in …


Hair Measurements Of Cortisol, Dhea, And Dhea To Cortisol Ratio As Biomarkers Of Chronic Stress Among People Living With Hiv In China: Known-Group Validation, Shan Qiao Ph.D., Xiaoming Li, Samuele Zilioli, Zheng Chen, Huihua Deng, Juxian Pan, Weigui Guo Jan 2017

Hair Measurements Of Cortisol, Dhea, And Dhea To Cortisol Ratio As Biomarkers Of Chronic Stress Among People Living With Hiv In China: Known-Group Validation, Shan Qiao Ph.D., Xiaoming Li, Samuele Zilioli, Zheng Chen, Huihua Deng, Juxian Pan, Weigui Guo

Faculty Publications

Background

Existing literature suggests that endocrine measures, including the steroid hormones of cortisol and Dehydroepiandrosterone (DHEA), as well as the DHEA to cortisol ratio in the human hair can be used as promising biomarkers of chronic stress among humans. However, data are limited regarding the validity of these measures as biomarkers of chronic stress among people living with HIV (PLWH), whose endocrine system or hypothalamic pituitary adrenal (HPA) axis may be affected by HIV infection and/or antiretroviral therapy (ART) medications.

Method

Using hair sample data and self-reported survey from 60 PLWH in China, we examined the validity of three endocrine …


Deuterateer: A Tool For Quantifying Peptide Isotope Precision And Kinetic Proteomics, Bradley C. Naylor, Michael T. Porter, Elise Wilson, Adam Herring, Spencer Lofthouse, Austin Hannemann, Stephen R. Piccolo, Alan L. Rockwood, John C. Price Jan 2017

Deuterateer: A Tool For Quantifying Peptide Isotope Precision And Kinetic Proteomics, Bradley C. Naylor, Michael T. Porter, Elise Wilson, Adam Herring, Spencer Lofthouse, Austin Hannemann, Stephen R. Piccolo, Alan L. Rockwood, John C. Price

Faculty Publications

Motivation

Using mass spectrometry to measure the concentration and turnover of the individual proteins in a proteome, enables the calculation of individual synthesis and degradation rates for each protein. Software to analyze concentration is readily available, but software to analyze turnover is lacking. Data analysis workflows typically don’t access the full breadth of information about instrument precision and accuracy that is present in each peptide isotopic envelope measurement. This method utilizes both isotope distribution and changes in neutromer spacing, which benefits the analysis of both concentration and turnover.

Results

We have developed a data analysis tool, DeuteRater, to measure protein …


Spring Temperature Variability Over Turkey Since 1800 Ce Reconstructed From A Broad Network Of Tree-Ring Data, Nesibe Köse, H. Tuncay Güner, Grant L. Harley, Joel Guiot Jan 2017

Spring Temperature Variability Over Turkey Since 1800 Ce Reconstructed From A Broad Network Of Tree-Ring Data, Nesibe Köse, H. Tuncay Güner, Grant L. Harley, Joel Guiot

Faculty Publications

The meteorological observational period in Turkey, which starts ca. 1930 CE, is too short for understanding long-term climatic variability. Tree rings have been used intensively as proxy records to understand summer precipitation history of the region, primarily because they have a dominant precipitation signal. Yet, the historical context of temperature variability is unclear. Here, we used higher-order principle components of a network of 23 tree-ring chronologies to provide a high-resolution spring (March–April) temperature reconstruction over Turkey during the period 1800– 2002. The reconstruction model accounted for 67 % (Adj. R 2 = 0.64, p < 0.0001) of the instrumental temperature variance over the full calibration period (1930–2002). The reconstruction is punctuated by a temperature increase during the 20th century; yet extreme cold and warm events during the 19th century seem to eclipse conditions during the 20th century. We found significant correlations between our March–April spring temperature reconstruction and existing gridded spring temperature reconstructions for Europe over Turkey and southeastern Europe. Moreover, the precipitation signal obtained from the tree-ring network (first principle component) showed highly significant correlations with gridded summer drought index reconstruction over Turkey and Mediterranean countries. Our results showed that, beside the dominant precipitation signal, a temperature signal can be extracted from tree-ring series and they can be useful proxies in reconstructing past temperature variability.


A Model For The Ergosterol Biosynthetic Pathway In Chlamydomonas Reinhardtii, Kristy M. Brumfield, Susan M. Laborde, James V. Moroney Jan 2017

A Model For The Ergosterol Biosynthetic Pathway In Chlamydomonas Reinhardtii, Kristy M. Brumfield, Susan M. Laborde, James V. Moroney

Faculty Publications

© 2017 British Phycological Society. Ergosterol and 7-dehydroporiferasterol are the predominant sterols in the membranes of the alga Chlamydomonas reinhardtii Dangeard. Ergosterol is primarily found in most fungi, which produce their end-product sterols by way of the intermediate lanosterol. In contrast, plants rarely make ergosterol and plant sterols are made via the intermediate cycloartenol. The cycloartenol-lanosterol bifurcation has been used as a means to evolutionarily categorize species based on their sterol production. Use of bioinformatics has revealed that the green alga, C. reinhardtii is probably producing sterols using a pathway very similar to that of higher plants. The Chlamydomonas genome …


Black Activist Mothering: Teach Me About What Teaches You, Jacqueline Roebuck Sakho- Jan 2017

Black Activist Mothering: Teach Me About What Teaches You, Jacqueline Roebuck Sakho-

Faculty Publications

This work defines Black activist mothering as a position of strength, courage, and brilliance that requires being in conversation with elders in order to make meaning of the present. Told as a conversation between the elders, the author enacts important cultural traditions that demonstrate the significance of intergenerational conversations in the process of becoming a mother, an activist, and an educational leader. The theoretical framework bridges the gap between Black mothering, leadership, and narrative all the while addressing educational inequities without compromising identity, culture, and womanhood. In the end, the piece demonstrates the author’s ability to move in and out …


Service Learning As Inquiry In An Undergraduate Science Course, Kelsie M. Bernot, Amy E. Kulesza, Judith S. Ridgway Jan 2017

Service Learning As Inquiry In An Undergraduate Science Course, Kelsie M. Bernot, Amy E. Kulesza, Judith S. Ridgway

Faculty Publications

To engage students in applying scientific process skills to real-world issues, we implemented a service-learning project model in our undergraduate introductory biology course for science majors. This model illustrates how we integrate inquiry inside and outside of the classroom through four steps: service, learning, classroom, and community. Out-of-class activities engaged students in serving the community (Service step) while deepening their learning experience beyond what they would learn in a classroom (Learning step). To connect the service-learning project with scientific process skills, students were asked to identify problems that our community partners were trying to solve, identify proposed solutions, and design …


Seasonal Survival Of Adult Female Mottled Ducks, Jena A. Moon, David A. Haukos, Warren C. Conway Jan 2017

Seasonal Survival Of Adult Female Mottled Ducks, Jena A. Moon, David A. Haukos, Warren C. Conway

Faculty Publications

The mottled duck (Anas fulgivula) is a non‐migratory duck dependent on coastal habitats to meet all of its life cycle requirements in the Western Gulf Coast (WGC) of Texas and Louisiana, USA. This population of mottled ducks has experienced a moderate decline during the past 2 decades. Adult survival has been identified as an important factor influencing population demography. Previous work based on band‐recovery data has provided only annual estimates of survival. We assessed seasonal patterns of female mottled duck survival from 2009 to 2012 using individuals marked with satellite platform transmitter terminals (PTTs). We used temperature and …


Ready To Learn: The Impact Of The Morning Blast Physical Activity Intervention On Elementary School Students, Tingting Xu, Erik Jon Byker, Monica Rae Gonzales Jan 2017

Ready To Learn: The Impact Of The Morning Blast Physical Activity Intervention On Elementary School Students, Tingting Xu, Erik Jon Byker, Monica Rae Gonzales

Faculty Publications

Objective: The purpose of this study was to investigate the effects of a physical activity intervention programme, named “Morning Blast”, on elementary school students’ math learning and daily physical activity. The Morning Blast intervention programme was a 16-week cardiovascular endurance emphasized physical activity program that students voluntarily participated in before the school day. Participants that volunteered, did so for the duration of the program. Methods: This mixed-methods study included seven educators and 83 students (n=90). The students were all children who were enrolled in Grades 3, 4, and 5 in a semi-rural elementary school in the United States. …