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Sccosmix: A Mixed-Effects Framework For Differential Coexpression And Transcriptional Interactions Modeling In Single-Cell Rna-Seq, Anderson Bussing, Giampiero Marra, Daping Fan, Russell Shinohara, Danni Tu, Yen-Yi Ho Aug 2025

Sccosmix: A Mixed-Effects Framework For Differential Coexpression And Transcriptional Interactions Modeling In Single-Cell Rna-Seq, Anderson Bussing, Giampiero Marra, Daping Fan, Russell Shinohara, Danni Tu, Yen-Yi Ho

Faculty Publications

Advancements in single-cell RNA-sequencing (scRNA-seq) technologies generate a wealth of gene expression data that provide exciting opportunities for studying gene-gene interactions systematically at individual cell resolution. Genetic interactions within a cell are tightly regulated and often highly dynamic in response to internal cellular signals and external stimuli. Evidence of these dynamic interactions can often be observed in scRNA-seq data by examining conditional co-expression changes. Existing approaches for studying these dynamic interaction changes in scRNA-seq data do not address the multi-subject hierarchical design commonly considered in single-cell experiments. In this paper, we propose a Mixed-effects framework for differential Coexpression and transcriptional …


Curved Confinement Directs Anchoring-Mediated Structural Transitions In Highly Chiral Liquid Crystal Shells, Sepideh Norouzi, Jeremy Money, Stiven Villada-Gil, José Martínez-Gonález, Monirosadat Sadati Aug 2025

Curved Confinement Directs Anchoring-Mediated Structural Transitions In Highly Chiral Liquid Crystal Shells, Sepideh Norouzi, Jeremy Money, Stiven Villada-Gil, José Martínez-Gonález, Monirosadat Sadati

Faculty Publications

Cholesteric liquid crystals (CLCs) confined in curved geometries exhibit a rich spectrum of defectmediated morphologies governed by the interplay between chirality, curvature, surface anchoring, and confinement. This study systematically investigates structural transitions in highly chiral CLC shells under asymmetric anchoring conditions, focusing on the effects of shell thickness and curvature on pitch axis reorientation and defect formation. Utilizing microfluidic techniques, we generate core–shell droplets with independently tunable anchoring at inner and outer aqueous interfaces. Transitioning from planar–planar to planar-homeotropic boundary conditions via surfactant-mediated modulation induces profound reorganizations in the director field, giving rise to focal conic domains (FCDs), stripe patterns, …


Direct And Indirect Associations Of Childhood Adversities With Functional Impairment And Life Stress Among Military Personnel, Laura Campbell-Sills, Emily R. Edwards, Sam D. Strizver, Karmel W. Choi, Jason D. Kautz, Santiago Papini, James A. Naifeh, Pablo A. Aliaga, Paul B. Lester, Ronald C. Kessler, Robert J. Ursano, Murray B. Stein, Paul D. Biese Jul 2025

Direct And Indirect Associations Of Childhood Adversities With Functional Impairment And Life Stress Among Military Personnel, Laura Campbell-Sills, Emily R. Edwards, Sam D. Strizver, Karmel W. Choi, Jason D. Kautz, Santiago Papini, James A. Naifeh, Pablo A. Aliaga, Paul B. Lester, Ronald C. Kessler, Robert J. Ursano, Murray B. Stein, Paul D. Biese

Faculty Publications

Background

Adverse childhood experiences (ACEs) are associated with physical and mental health difficulties in adulthood. This study examines the associations of ACEs with functional impairment and life stress among military personnel, a population disproportionately affected by ACEs. We also evaluate the extent to which the associations of ACEs with functional outcomes are mediated through internalizing and externalizing disorders.

Methods

The sample included 4,666 STARRS Longitudinal Study (STARRS-LS) participants who provided information about ACEs upon enlistment in the US Army (2011–2012). Mental disorders were assessed in wave 1 (LS1; 2016–2018), and functional impairment and life stress were evaluated in wave 2 …


Assessing Effectiveness Of Runnel Restoration In New England Salt Marsh Habitats, David M. Burdick, Grant Mckown, Gregg Moore, Jenny Gibson, Wenley Ferguson, John Herbert, Nancy Pau, Susan Adamowicz, Geoff Wilson Jul 2025

Assessing Effectiveness Of Runnel Restoration In New England Salt Marsh Habitats, David M. Burdick, Grant Mckown, Gregg Moore, Jenny Gibson, Wenley Ferguson, John Herbert, Nancy Pau, Susan Adamowicz, Geoff Wilson

Faculty Publications

Rising sea levels that increase flooding in salt marshes recovering from hydrologic impairments is reducing nesting habitat for salt marsh sparrows. Abandonment of colonial farming practices (1600s through 1900s) has resulted in large, waterlogged basins characterized by shallow depressions (pannes) dominated by short-form Spartina alterniflora and unvegetated megapools that are subsiding. A relatively new technique designed to provide regular tidal flooding and drainage to the waterlogged basins that have formed on the marsh is runnelling – creation of shallow hydrologic features on the marsh surface. Will runnels result in revegetation of pannes and pools with productive perennial grasses that are …


Non-Spectator Behavior Of A Neutral Phosphine Ligand Driven By A Redox-Active Boron Cluster, Jared R. Riffle, Cash L. Jowers, Sarah Luna, Mark D. Smith, Dmitry V. Peryshkov Jul 2025

Non-Spectator Behavior Of A Neutral Phosphine Ligand Driven By A Redox-Active Boron Cluster, Jared R. Riffle, Cash L. Jowers, Sarah Luna, Mark D. Smith, Dmitry V. Peryshkov

Faculty Publications

A new concept of ligand ambiphilicity that relies on the redox behavior of the indirectly coordinated boron cluster scaffold instead of the direct involvement of a single center in a ligand is introduced. A copper(I) complex of a carboranyl-based triphosphine, [tBuP-closo-{C2B10}-PhP-closo-{C2B10}-tBuP]CuPF6, in acetonitrile solution coordinates an exogenous X− anion (X− = Cl− or N3−) at the phosphorus center of the ligand and not at the cationic metal site to form [tBuP(X)-nido-{C2B …


Collection Of Instructional Slides From Molten Salt Electrochemistry Symposium (Moses), Devin Rappleye, Carlos Mejia Jul 2025

Collection Of Instructional Slides From Molten Salt Electrochemistry Symposium (Moses), Devin Rappleye, Carlos Mejia

Faculty Publications

During the Molten Salt Electrochemistry Symposium (MoSES) on July 30-31, 2025, interactive instruction was given to the attendees including live demonstrations. These slides contain the introductory instructions given for each learning module at MoSES 2025. Please visit https://pyro.byu.edu/moses for more information.


The Relationship Between Hand Grip Strength And Cognitive Function In Middle-Aged And Elderly People In China: A Cross-Sectional Analysis Based On Charls Data, Haiwei Li, Jing Zhang, Peipei Cheng, Liwei Guo, Xuemei Sui M.D., M.P.H., Ph.D. Jul 2025

The Relationship Between Hand Grip Strength And Cognitive Function In Middle-Aged And Elderly People In China: A Cross-Sectional Analysis Based On Charls Data, Haiwei Li, Jing Zhang, Peipei Cheng, Liwei Guo, Xuemei Sui M.D., M.P.H., Ph.D.

Faculty Publications

This study explores the relationship between hand grip strength (HGS) and cognitive function in China’s middle-aged and elderly population. We employed a cross-sectional design using data from 4535 participants aged ≥ 45 years from the 2015 China Health and Retirement Longitudinal Study national dataset. The relationships between HGS and various dimensions of cognitive function, as well as the association between HGS and cognitive impairment, were investigated using ordinary least squares regression models and logistic regression models. Dose–response relationships between HGS and cognitive impairment were modeled using restricted cubic spline curves. Subgroup and sensitivity analyses were performed to assess the robustness …


An Experimental Investigation Of Federal Messaging On Public Support For Enforcement- And Treatment-Based Approaches For Opioid Overdose Prevention In South Carolina, Lídia Gual-Gonzalez, Hunter M. Boehme, Peter Baker, Melissa Nolan Ph.D., Mph Jul 2025

An Experimental Investigation Of Federal Messaging On Public Support For Enforcement- And Treatment-Based Approaches For Opioid Overdose Prevention In South Carolina, Lídia Gual-Gonzalez, Hunter M. Boehme, Peter Baker, Melissa Nolan Ph.D., Mph

Faculty Publications

Background

As the opioid overdose crisis continues to produce excessive morbidity and mortality in the United States, government agencies have applied various approaches to prevent overdoses, including law-enforcement efforts (e.g., arresting people who use drugs, interrupting drug traffickers, etc.) and treatment-based approaches (e.g., naloxone, medications for opioid use disorder, etc.). Public perception and support of these approaches are relevant for informing policy, allocating resources, and effectively implementing community interventions to prevent drug-related harms.

Methods

Using an embedded informational survey design, we experimentally assessed whether public support for strategies to prevent overdose in South Carolina is influenced by language from federal …


Longitudinal Associations Between Waking Movement Behaviors And Health-Related Quality Of Life In Older Adults: A Compositional Data Analysis Approach, Jaclyn P. Maher, Alexander Jochim, Yeongjun Seo, Brynn L. Hudgins, Iman F. Khan, Peyton A. Greco, Emily M. Postlehwait, Om L. Patel, Krista S. Leonard, Chih-Hsiang Yang, Denver M. Y. Brown Jul 2025

Longitudinal Associations Between Waking Movement Behaviors And Health-Related Quality Of Life In Older Adults: A Compositional Data Analysis Approach, Jaclyn P. Maher, Alexander Jochim, Yeongjun Seo, Brynn L. Hudgins, Iman F. Khan, Peyton A. Greco, Emily M. Postlehwait, Om L. Patel, Krista S. Leonard, Chih-Hsiang Yang, Denver M. Y. Brown

Faculty Publications

Objectives

Movement behaviors, such as sedentary behavior (SB), light intensity physical activity (LPA), and moderate to vigorous intensity physical activity (MVPA) are mutually exclusive, in that time spent in one behavior inevitably displaces time spent in another. Yet, few studies have simultaneously considered these health behaviors and their association with health-related quality of life (HRQoL), an important indicator of health and well-being in aging populations. This study aimed to explore the role of waking movement behaviors (i.e., SB, LPA, MVPA) in prospectively predicting HRQoL in older adults. The study further aimed to cross-validate associations between movement behaviors and HRQoL using …


Insights From The Front Line: Uplifting Stories Of The Covid-19 Pandemic Through The Eyes Of The Public Health Workforce In Iowa, Heidi Haines, Amanda Sursely, Hanh Pham, Rylee Beltran, Daniel K. Sewell, Lina Tucker Reinders, Natoshia Askelson, Sarah Dixon, Kaitlin Emrich, Christine Estle, Michelle Lewis, Jimmy Reyes Jul 2025

Insights From The Front Line: Uplifting Stories Of The Covid-19 Pandemic Through The Eyes Of The Public Health Workforce In Iowa, Heidi Haines, Amanda Sursely, Hanh Pham, Rylee Beltran, Daniel K. Sewell, Lina Tucker Reinders, Natoshia Askelson, Sarah Dixon, Kaitlin Emrich, Christine Estle, Michelle Lewis, Jimmy Reyes

Faculty Publications

Introduction: SARS-CoV-2 was declared a pandemic in March 2020. Studies have characterized some of the negative impact of the pandemic on public health workers (PHW), but few have explored the strength and coping strategies used. Our study documents the experiences of PHW in Iowa during the pandemic. Methods: We used an innovative mixed methods data collection tool, SenseMaker® to gather stories from PHW in Iowa between March and July 2022. Participants provided additional data about their story via structured follow-up questions. We conducted descriptive analyses of the quantitative questions. A qualitative thematic and sentiment analysis was applied to all …


Modeling Self-Discharge In Li/S Batteries Through Electrochemical Anode Reactions: A Theoretical Perspective, Ralph E. White, Paul T. Coman Jul 2025

Modeling Self-Discharge In Li/S Batteries Through Electrochemical Anode Reactions: A Theoretical Perspective, Ralph E. White, Paul T. Coman

Faculty Publications

The growing demand for high-energy-density batteries has renewed interest in lithium–sulfur (Li/S) systems, which offer significant advantages but suffer from severe self-discharge during rest. While prior studies attribute this degradation to chemical parasitic reactions or polysulfide shuttling, they overlook the inherently electrochemical nature of anode-side processes. In this work, a 1D physics-based model of a Li/S battery was developed to explicitly incorporate lithium-metal oxidation and the stepwise electrochemical reduction of polysulfides at the anode. Using COMSOL Multiphysics, galvanostatic discharge followed by open-circuit rest under two conditions was analyzed - with and without parasitic anode reactions. The results show that when …


A Caffeine And Theacrine Combination Improves Cognitive Performance In Tactical Personnel Under Physically Fatiguing Conditions, Blaine S. Lints, Adam T. Harrison, Sten O. Stray-Gundersen, Gianna F. Mastrofini, Riccardo F. Romersi, Noah K. Nakagawa, Mackenzie B. Yonder, Chimaobim E. Martin-Diala, Alexa J. Chandler, R. Davis Moore, Shawn M. Arent Ph.D., Cscs*D, Fissn, Facsm, Fnak Jul 2025

A Caffeine And Theacrine Combination Improves Cognitive Performance In Tactical Personnel Under Physically Fatiguing Conditions, Blaine S. Lints, Adam T. Harrison, Sten O. Stray-Gundersen, Gianna F. Mastrofini, Riccardo F. Romersi, Noah K. Nakagawa, Mackenzie B. Yonder, Chimaobim E. Martin-Diala, Alexa J. Chandler, R. Davis Moore, Shawn M. Arent Ph.D., Cscs*D, Fissn, Facsm, Fnak

Faculty Publications

Background

Optimizing human performance under stressful physical and cognitive conditions is paramount during high-stakes military operations. As such, interventions to improve warfighter performance by mitigating task-induced cognitive performance deficits are necessary. While caffeine is the most widely consumed psychoactive substance in the world, common side effects (i.e. anxiousness, micro-saccades, irritability) may be detrimental to warfighter operations. Theacrine, a purine alkaloid similar in structure to caffeine but with a longer half-life, less habituation, and fewer side effects, is proposed as a caffeine-alternative to enhance cognitive resilience.

Methods

Tactically trained participants (n = 20; F = 5; M = 16; age …


A Molecular Dynamics Study Of Single Crystal And Intergranular Crack Growth Behavior In WX M1−X Binary Aloys (M = V, Mo, Ta, Re), Samuel C. Wagers, Adib J. Samin Jul 2025

A Molecular Dynamics Study Of Single Crystal And Intergranular Crack Growth Behavior In WX M1−X Binary Aloys (M = V, Mo, Ta, Re), Samuel C. Wagers, Adib J. Samin

Faculty Publications

This study employs molecular dynamics simulations to investigate the fracture behavior of four binary refractory alloys WxM1−x (M = V, Mo, Ta, Re) and their dependence on crystallographic orientation, composition, and grain boundary (GB) structure, focusing on six distinct low-sigma grain boundaries. The simulations reveal that the effect of composition is complex with the most pronounced effect, accompanied by the maximum or minimum stress intensity factor, generally occurring at intermediate compositions. All compositions showed a higher fracture resistance in the [110] orientation compared to the [100] orientation. There was a strong thermodynamic tendency for Mo and V, …


Community And School Programs, Policies And Environments Related To Child Dietary Intake:The Healthy Communities Study, Gail Woodward-Lopez, Alexander C. Mclain, Edward A. Frongillo Jr., Natalie Colabianchi, Vicki Collie-Akers, Lorrene D. Ritchie Jul 2025

Community And School Programs, Policies And Environments Related To Child Dietary Intake:The Healthy Communities Study, Gail Woodward-Lopez, Alexander C. Mclain, Edward A. Frongillo Jr., Natalie Colabianchi, Vicki Collie-Akers, Lorrene D. Ritchie

Faculty Publications

Background

To reverse the epidemic of unhealthy eating and related chronic disease in the United States, intervening early in life is essential.

Objective

Identify features of community- and school-based programmes, policies and environments related to child intake of fruits and vegetables (FV) and sugar-sweetened beverages (SSB).

Methods

Dietary intake of children 4–15 years old (n = 5138) from elementary and middle schools in 130 US communities was collected by survey (of parent and/or child) in 2013–2015. Features of community programs and policies (CPPs) and school environments were collected by staff surveys, direct observation, key informant interviews, and/or document review. …


Designing Context-Specific Physical Activity Interventions For English Primary Schools: Key Learning From A Four-Month Rapid Ethnography, Robert Walker, Danielle House, Simona Kent-Saisch, Alice Porter, Ruth Salway, Lydia Emm-Collison, Michael Beets Med, Mph, Phd, David Revalds Lubans, Frank De Vocht, Russell Jago Jul 2025

Designing Context-Specific Physical Activity Interventions For English Primary Schools: Key Learning From A Four-Month Rapid Ethnography, Robert Walker, Danielle House, Simona Kent-Saisch, Alice Porter, Ruth Salway, Lydia Emm-Collison, Michael Beets Med, Mph, Phd, David Revalds Lubans, Frank De Vocht, Russell Jago

Faculty Publications

Background

Physical activity is essential for children’s health. Primary schools offer an opportunity to equitably promote physical activity. However, school-based interventions have been shown to have little to no effect, potentially due to a lack of consideration of school heterogeneity. This study reports on a rapid ethnography study that was used to capture insights into English primary schools physical activity. The data are intended to inform the design of a context-specific intervention to improve pupil physical activity.

Methods

Three researchers conducted a four-month rapid ethnography study within three primary schools in Bristol, UK, between March and July 2024. Several methods …


Designing Context-Specific Physical Activity Interventions For English Primary Schools: Key Learning From A Four-Month Rapid Ethnography, Robert Walker, Danielle House, Simona Kent-Saisch, Alice Porter, Ruth Salway, Lydia Emm-Collison, Michael W. Beets Med, Mph, Phd, David Revalds Lubans, Frank De Vocht, Russell Jago Jul 2025

Designing Context-Specific Physical Activity Interventions For English Primary Schools: Key Learning From A Four-Month Rapid Ethnography, Robert Walker, Danielle House, Simona Kent-Saisch, Alice Porter, Ruth Salway, Lydia Emm-Collison, Michael W. Beets Med, Mph, Phd, David Revalds Lubans, Frank De Vocht, Russell Jago

Faculty Publications

Background

Physical activity is essential for children’s health. Primary schools offer an opportunity to equitably promote physical activity. However, school-based interventions have been shown to have little to no effect, potentially due to a lack of consideration of school heterogeneity. This study reports on a rapid ethnography study that was used to capture insights into English primary schools physical activity. The data are intended to inform the design of a context-specific intervention to improve pupil physical activity.

Methods

Three researchers conducted a four-month rapid ethnography study within three primary schools in Bristol, UK, between March and July 2024. Several methods …


Super-Resolution Stimulated X-Ray Raman Spectroscopy, Kai Li, Christian Ott, Marcus Agåker, Phay J. Ho, Gilles Doumy, Alexander Magunia, Marc Rebholz, Marc Simon, Tommaso Mazza, Alberto De Fanis, Thomas M. Baumann, Jacobo Montano, Nils Rennhack, Sergey Usenko, Yevheniy Ovcharenko, Kalyani Chordiya, Lan Cheng, Jan Erik Rubensson, Michael Meyer, Thomas Pfeifer, Mette B. Gaarde, Linda Young Jul 2025

Super-Resolution Stimulated X-Ray Raman Spectroscopy, Kai Li, Christian Ott, Marcus Agåker, Phay J. Ho, Gilles Doumy, Alexander Magunia, Marc Rebholz, Marc Simon, Tommaso Mazza, Alberto De Fanis, Thomas M. Baumann, Jacobo Montano, Nils Rennhack, Sergey Usenko, Yevheniy Ovcharenko, Kalyani Chordiya, Lan Cheng, Jan Erik Rubensson, Michael Meyer, Thomas Pfeifer, Mette B. Gaarde, Linda Young

Faculty Publications

Propagation of intense X-ray pulses through dense media has led to the observation of phenomena such as atomic X-ray lasing1,2, self-induced transparency3 and stimulated X-ray Raman scattering (SXRS)4. SXRS has been long predicted as a means to launch and probe valence-electron wavepackets and as a building block for nonlinear X-ray spectroscopies5,6. However, experimental observations of SXRS to date4,7,8 have not provided spectroscopic information, and theoretical modelling has largely implemented hard-to-realize phase-coherent attosecond pulses. Here we demonstrate SXRS with spectroscopic precision, that is, detection of valence-excited states in neon with a near Fourier-limited …


Predicting Sleep And Sleep Stage In Children Using Actigraphy And Heartrate Via A Long Short-Term Memory Deep Learning Algorithm: A Performance Evaluation, Robert Weaver Med, Phd, James White, Olivia Finnegan, Hongpeng Yang, Zifei Zhong, Keagan Kiely, Catherine Jones, Yan Tong, Srihari Nelakuditi, Rahul Ghosal, David E. Brown, Russell R. Pate Ph.D., Gregory J. Welk, Massimiliano De Zambotti, Yuan Wang, Sarah Burkart, Elizabeth L. Adams Phd, Bridget Armstrong, Michael Beets Med, Mph, Phd Jul 2025

Predicting Sleep And Sleep Stage In Children Using Actigraphy And Heartrate Via A Long Short-Term Memory Deep Learning Algorithm: A Performance Evaluation, Robert Weaver Med, Phd, James White, Olivia Finnegan, Hongpeng Yang, Zifei Zhong, Keagan Kiely, Catherine Jones, Yan Tong, Srihari Nelakuditi, Rahul Ghosal, David E. Brown, Russell R. Pate Ph.D., Gregory J. Welk, Massimiliano De Zambotti, Yuan Wang, Sarah Burkart, Elizabeth L. Adams Phd, Bridget Armstrong, Michael Beets Med, Mph, Phd

Faculty Publications

Children's ambulatory sleep is commonly measured via actigraphy. However, traditional actigraphy measured sleep (e.g., Sadeh algorithm) struggles to predict wake (i.e., specificity, values typically < 70) and cannot predict sleep stages. Long short-term memory (LSTM) is a machine learning algorithm that may address these deficiencies. This study evaluated the agreement of LSTM sleep estimates from actigraphy and heartrate (HR) data with polysomnography (PSG). Children (N = 238, 5–12 years,52.8% male, 50% Black 31.9% White) participated in an overnight laboratory polysomnography. Participants were referred be-cause of suspected sleep disruptions. Children wore an ActiGraph GT9X accelerometer and two of three consumer wearables(i.e., Apple Watch Series 7, Fitbit Sense, Garmin Vivoactive 4) on their non-dominant wrist during the polysomnogram. LSTM estimated sleep versus wake and sleep stage (wake, not-REM, REM) using raw actigraphy and HR data for each 30-s epoch. Logistic regression and random forest were also estimated as a benchmark for performance with which to compare the LSTM results. A 10-fold cross-validation technique was employed, and confusion matrices were constructed. Sensitivity and specificity were calculated to assess the agreement between research-grade and consumer wearables with the criterion polysomnography. For sleep versus wake classification, LSTM outperformed logistic regression and random forest with accuracy ranging from 94.1to 95.1, sensitivity ranging from 94.9 to 95.9 across different devices, and specificity ranging from 84.5 to 89.6. The addition of HR improved the prediction of sleep stages but not binary sleep versus wake. LSTM is promising for predicting sleep and sleep staging from actigraphy data, and HR may improve sleep stage prediction.


Creatine Monohydrate Supplementation For Older Adults And Clinical Populations, Darren G. Candow, Sergej M. Ostojic, Philip D. Chilibeck, Igor Longobardi, Bruno Gualano, Mark A. Tarnopolsky, Theo Wallimann, Terence Moriarty, Richard B. Kreider, Scott C. Forbes, Uwe Schlattner, Jose Antonio Jul 2025

Creatine Monohydrate Supplementation For Older Adults And Clinical Populations, Darren G. Candow, Sergej M. Ostojic, Philip D. Chilibeck, Igor Longobardi, Bruno Gualano, Mark A. Tarnopolsky, Theo Wallimann, Terence Moriarty, Richard B. Kreider, Scott C. Forbes, Uwe Schlattner, Jose Antonio

Faculty Publications

Background: The biological process of aging is typically associated with a decrease in muscle quantity, muscle performance (primarily strength), bone mass and architecture, functionality and neurological/cognitive function. From a healthy aging perspective, interventions that have the potential to overcome or attenuate these decrements are clinically relevant.

Methods: We conducted a narrative review on the efficacy of creatine monohydrate supplementation (CrM) in older adults. Results: Accumulating research shows that CrM, primarily when combined with exercise training, is safe and has beneficial effects on measures of whole-body lean body mass, regional muscle size, muscle strength, bone area and thickness, functional ability, glucose …


An Acoustofluidic Device For Sample Preparation And Detection Of Small Extracellular Vesicles, Jessica F. Liu, Jianping Xia, Joseph Rich, Shuaiguo Zhao, Kaichun Yang, Brandon Lu, Ying Chen, Tiffany Wen Ye, Tony Jun Huang Jul 2025

An Acoustofluidic Device For Sample Preparation And Detection Of Small Extracellular Vesicles, Jessica F. Liu, Jianping Xia, Joseph Rich, Shuaiguo Zhao, Kaichun Yang, Brandon Lu, Ying Chen, Tiffany Wen Ye, Tony Jun Huang

Faculty Publications

Small extracellular vesicles (sEVs) have emerged as powerful vectors for liquid biopsy, offering a noninvasive window into the dynamic physiological and pathological states of the body. However, to fully leverage the clinical potential of sEV biomarkers, it is imperative to develop robust and efficient technologies for their isolation and analysis. In this study, we introduce a novel sharp-edge acoustofluidic platform designed for rapid and effective sample preparation, coupled with sensitive detection of specific sEV populations based on their surface markers. Our approach utilizes acoustically activated sharp-edge microstructures to concentrate bead-bound sEVs within the microfluidic device, facilitating immediate visualization by fluorescence …


How Multi-Scale Modeling Can Help Examine Social Determinants Of Health And Resulting Disparities, Kyoko Yoshida, Elsje Pienaar, Shalanda A. Bynum, Naomi Chesler, Mitchel J. Colebank, Jessie Heneghan, Nadra Tyus, Jasmine Miller-Kleinhenz, Bruce Y. Lee Jul 2025

How Multi-Scale Modeling Can Help Examine Social Determinants Of Health And Resulting Disparities, Kyoko Yoshida, Elsje Pienaar, Shalanda A. Bynum, Naomi Chesler, Mitchel J. Colebank, Jessie Heneghan, Nadra Tyus, Jasmine Miller-Kleinhenz, Bruce Y. Lee

Faculty Publications

Social determinants of health (SDOH) are the conditions in which people live, work, and play, and the wider set of factors (e.g., social and economic systems and policies) that shape a person’s daily life. SDOH can differ significantly across communities and populations, having positive impacts for some and negative impacts for others. Ultimately, this results in differences in health and disease distribution, that are known as health disparities. Despite the known impacts of SDOH and calls to characterize, address, reduce, and eliminate health disparities, they persist and, in some cases, have worsened. To address this challenge, a session at the …


Precision Spectral Measurements Of Chromium And Titanium From 10 To 250  Gev/N And Sub-Iron To Iron Ratio With The Calorimetric Electron Telescope On The International Space Station, O. Adriani, Y. Akaike, K. Asano, Y. Asaoka, E. Berti, P. Betti, G. Bigongiari, W. R. Binns, M. Bongi, P. Brogi, A. Bruno, N. Cannady, G. Castellini, C. Checchia, M. L. Cherry, G. Collazuol, G. A. De Nolfo, K. Ebisawa, A. W. Ficklin, H. Fuke, S. Gonzi, T. G. Guzik, T. Hams, K. Hibino, M. Ichimura, M. H. Israel, K. Kasahara, J. Kataoka, R. Kataoka, Y. Katayose, C. Kato, N. Kawanaka, Y. Kawakubo Jul 2025

Precision Spectral Measurements Of Chromium And Titanium From 10 To 250  Gev/N And Sub-Iron To Iron Ratio With The Calorimetric Electron Telescope On The International Space Station, O. Adriani, Y. Akaike, K. Asano, Y. Asaoka, E. Berti, P. Betti, G. Bigongiari, W. R. Binns, M. Bongi, P. Brogi, A. Bruno, N. Cannady, G. Castellini, C. Checchia, M. L. Cherry, G. Collazuol, G. A. De Nolfo, K. Ebisawa, A. W. Ficklin, H. Fuke, S. Gonzi, T. G. Guzik, T. Hams, K. Hibino, M. Ichimura, M. H. Israel, K. Kasahara, J. Kataoka, R. Kataoka, Y. Katayose, C. Kato, N. Kawanaka, Y. Kawakubo

Faculty Publications

The Calorimetric Electron Telescope (CALET), in operation on the International Space Station since 2015, collected a large sample of cosmic-ray (CR) iron and sub-iron events over a wide energy interval. In this Letter, we report an update of our previous measurement of the iron flux and we present-for the first time-a high statistics measurement of the spectra of two sub-iron elements Cr and Ti in the energy interval from 10 to 250  GeV/n. The analyses are based on 8 years of data. Differently from older generations of cosmic-ray instruments which, in most cases, could not resolve individual sub-iron elements, CALET …


Machine Tool Interoperability In Smart Manufacturing And Industry 4.0, M. R. Mccormick, Mohammed Shafae, Thorsten Wuest Jul 2025

Machine Tool Interoperability In Smart Manufacturing And Industry 4.0, M. R. Mccormick, Mohammed Shafae, Thorsten Wuest

Faculty Publications

Real-time decision making is supported by data-hungry emerging technologies such as machine learning and digital twins. Innovations in manufacturing process control utilizing these technologies are constrained by interoperability. Marketing materials, sales pitches, and academic literature portray interoperability on the factory floor as seamless and robust. However, this study demonstrates that in spite of plentiful mature standards, interoperability on the factory floor is neither seamless nor robust. To exemplify interoperability in the context of an established and widely adopted standard, this study analyzes the interoperability of machine tools produced by a premier equipment builder which has exceeded US$1 billion in sales …


Recent Insights Into Electrochemical Sensing Of Per- And Polyfluoroalkyl Substances, Christopher T. Lebarron, Pavithra Hosseini, Seyyedamirhossein Hosseini Jul 2025

Recent Insights Into Electrochemical Sensing Of Per- And Polyfluoroalkyl Substances, Christopher T. Lebarron, Pavithra Hosseini, Seyyedamirhossein Hosseini

Faculty Publications

Per- and polyfluoroalkyl substances (PFAS) are widely studied due to their persistence, prevalence, and harmful effects on human and environmental health. Key challenges include improving detection methodologies, such as lowering detection limits, and developing more sensitive and selective approaches. Given the ubiquity of PFAS, effective sensing must be paired with remediation strategies that transform these pollutants into value-added or less toxic products. This perspective explores recent advances in electrochemical PFAS detection, highlighting challenges and future opportunities.

 


Recent Insights Into Electrochemical Sensing Of Per- And Polyfluoroalkyl Substances, Christopher T. Lebarron, Pavithra Hosseini, Seyyedamirhossein Hosseini Jul 2025

Recent Insights Into Electrochemical Sensing Of Per- And Polyfluoroalkyl Substances, Christopher T. Lebarron, Pavithra Hosseini, Seyyedamirhossein Hosseini

Faculty Publications

Per- and polyfluoroalkyl substances (PFAS) are widely studied due to their persistence, prevalence, and harmful effects on human and environmental health. Key challenges include improving detection methodologies, such as lowering detection limits, and developing more sensitive and selective approaches. Given the ubiquity of PFAS, effective sensing must be paired with remediation strategies that transform these pollutants into value-added or less toxic products. This perspective explores recent advances in electrochemical PFAS detection, highlighting challenges and future opportunities.


Large Bandgap Observed On The Surfaces Of Euzn2As2 Single Crystals, Dejia Kong, Siavash Karbasizadeh, Ganesh Narasimha, Paras Regmi, Chenggang Tao, Chenggang Tao, Sai Mu, Rama Vasudevan, Ian Harrison, Rongying Jin, Zheng Gai Jul 2025

Large Bandgap Observed On The Surfaces Of Euzn2As2 Single Crystals, Dejia Kong, Siavash Karbasizadeh, Ganesh Narasimha, Paras Regmi, Chenggang Tao, Chenggang Tao, Sai Mu, Rama Vasudevan, Ian Harrison, Rongying Jin, Zheng Gai

Faculty Publications

EuZn2As2 (M = Zn, Cd, In, Sn etc.) is an excellent material system for studying magnetism-tuned topological properties. However, discrepancies exist between experimental data and theoretical calculations regarding the bulk and surface bandgaps. In this work, cleaved EuZn2As2 crystals are studied using scanning tunneling microscopy/spectroscopy and density functional theory calculations. Triangular-shaped defect-induced modifications in the local density of states help distinguish between Eu-terminated and AsZn-terminated surfaces. While large bandgaps ( ~1.5 eV at 77 K) are observed on both pristine surfaces, the bandgap size is found to be highly sensitive to local heterogeneity, tending …


An Upper-Mesopelagic-Zone Carbon Budget For The Subarctic North Pacific, Brandon M. Stephens, Montserrat Roca-Martí, Amy E. Maas, Vinícius J. Amaral, Samantha Clevenger, Shawnee Traylor, Claudia R. Benitez-Nelson, Philip W. Boyd, Ken O. Buesseler, Craig A. Carlson, Nicolas Cassar, Margaret Estapa, Andrea J. Fassbender, Yibin Huang, Phoebe J. Lam, Oliver Marchal, Susanne Menden-Deuer, Nicola L. Paul, Alyson E. Santoro, David A. Siegel, David P. Nicolson Jul 2025

An Upper-Mesopelagic-Zone Carbon Budget For The Subarctic North Pacific, Brandon M. Stephens, Montserrat Roca-Martí, Amy E. Maas, Vinícius J. Amaral, Samantha Clevenger, Shawnee Traylor, Claudia R. Benitez-Nelson, Philip W. Boyd, Ken O. Buesseler, Craig A. Carlson, Nicolas Cassar, Margaret Estapa, Andrea J. Fassbender, Yibin Huang, Phoebe J. Lam, Oliver Marchal, Susanne Menden-Deuer, Nicola L. Paul, Alyson E. Santoro, David A. Siegel, David P. Nicolson

Faculty Publications

Mesopelagic zone (MZ) carbon budgets comparing supply with demand can be difficult to constrain due to the temporal and spatial offsets between key sources and sinks, their associated uncertainties, and potential sampling biases. To address these challenges, the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) campaign increased the number and variety of simultaneous measurements to monitor temporal variability in the MZ carbon budget using both a Lagrangian frame of reference and long-term autonomous observations. In this study, we collate a comprehensive combination of new and previously published organic carbon supply and demand measurements collected from the surface (5 …


Electroexcitation Of Nucleon Resonances And Emergence Of Hadron Mass, Patrick Achenbach, Daniel S. Carman, Ralf Gothe, Kyungseon Joo, Victor I. Mokeev, Craig D. Roberts Jul 2025

Electroexcitation Of Nucleon Resonances And Emergence Of Hadron Mass, Patrick Achenbach, Daniel S. Carman, Ralf Gothe, Kyungseon Joo, Victor I. Mokeev, Craig D. Roberts

Faculty Publications

Developing an understanding of phenomena driven by the emergence of hadron mass (EHM) is one of the most challenging problems in the Standard Model. This discussion focuses on the impact of results on nucleon resonance (N*) electroexcitation amplitudes (or γvpN*) obtained from experiments during the 6 GeV era in Hall B at Jefferson Lab on understanding EHM. Analyzed using continuum Schwinger function methods (CSMs), these results have revealed new pathways for the elucidation of EHM. A good description of the Δ (1232) 3/2+, N (1440) 1/2+, and Δ (1600) 3/2+ …


‘They Say There’S More Equality…’: Women’S Perspectives On Progress And Setbacks In Gender Equality In Northern Iceland During Times Of Crisis, Marya Rozanova-Smith, Embla Eir Oddsdóttir, Andrey N. Petrov Jul 2025

‘They Say There’S More Equality…’: Women’S Perspectives On Progress And Setbacks In Gender Equality In Northern Iceland During Times Of Crisis, Marya Rozanova-Smith, Embla Eir Oddsdóttir, Andrey N. Petrov

Faculty Publications

Enabling gender equality through the empowerment of women to fully participate in modern society is one of the most critical steps toward sustainable development. However, recent UN reports indicate that the impacts of the COVID-19 pandemic have jeopardized the achievement of Sustainable Development Goal 5 by 2030 in many countries worldwide, including Iceland, which has consistently been ranked as a global leader in gender equality. The main objective of this qualitative study is to examine the gendered impacts of the COVID-19 pandemic by exploring women’s lived experiences during the crisis and its aftermath across the primary domains of gender equality—personal …


A Survey On Security Applications With Smartnics: Taxonomy, Implementations, Challenges, And Future Trends, Serigo Elizalde, Ali Alsabeh, Ali Mazloum, Samia Choeiri, Elie Kfoury, Jose Gomez, Jorge Crichigno Jul 2025

A Survey On Security Applications With Smartnics: Taxonomy, Implementations, Challenges, And Future Trends, Serigo Elizalde, Ali Alsabeh, Ali Mazloum, Samia Choeiri, Elie Kfoury, Jose Gomez, Jorge Crichigno

Faculty Publications

Over the last decade, network applications have grown exponentially, demanding high-speed interconnects. Unfortunately, chip manufacturers are approaching the upper limits of silicon-based computing with slow improvements in computational performance and energy efficiency. This trend has forced the industry to shift paradigms, moving from monolithic architectures to heterogeneous, domain-specific designs. Moreover, the ever-evolving threats compromise digital services and demand more scalable and flexible solutions to ensure service continuity in production networks. Smart Network Interface Cards (SmartNICs) are a product of this new paradigm, integrating domain-specific engines and general-purpose cores to offload various network infrastructure tasks, including those related to security. This …