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Nanoscale Characterization Of Thin Film Coatings Using Annular Dark Field Scanning Transmission Electron Microscopy, Guillermo Acosta, Richard Vanfleet, David D. Allred Jan 2008

Nanoscale Characterization Of Thin Film Coatings Using Annular Dark Field Scanning Transmission Electron Microscopy, Guillermo Acosta, Richard Vanfleet, David D. Allred

Faculty Publications

When considering the optical performance of thin films in the Extreme Ultraviolet (EUV), developing an accurate physical description of a thin film coating is necessary to be able to successfully model optical performance. With the short wavelengths of the EUV, film interfaces and sample roughness warrant special attention and care. The surfaces of thin film samples are routinely measured by Atomic Force Microscopy, from which roughness can be determined. However, characterizing the quality of interfaces below the surface is much more challenging. In a recent study of scandium oxide thin films, High Resolution Transmission Electron Microscopy and Annular Dark Field …


Utilizing Phrase-Similarity Measures For Detecting And Clustering Informative Rss News Articles, Yiu-Kai D. Ng, Maria Soledad Pera Jan 2008

Utilizing Phrase-Similarity Measures For Detecting And Clustering Informative Rss News Articles, Yiu-Kai D. Ng, Maria Soledad Pera

Faculty Publications

As the number of RSS news feeds continue to increase over the Internet, it becomes necessary to minimize the workload of the user who is otherwise required to scan through huge numbers of news articles to find related articles of interest, which is a tedious and often an impossible task. In order to solve this problem, we present a novel approach, called InFRSS, which consists of a correlation-based phrase matching (CPM) model and a fuzzy compatibility clustering (FCC) model. CPM can detect RSS news articles containing phrases that are the same as well as semantically alike, and dictate the degrees …


Socially Rational Models For Autonomous Agents, Wynn C. Stirling, James K. Archibald, Matthew S. Nokleby Jan 2008

Socially Rational Models For Autonomous Agents, Wynn C. Stirling, James K. Archibald, Matthew S. Nokleby

Faculty Publications

Autonomous multi-agent systems that are to coordinate must be designed according to models that accommodate such complex social behavior as compromise, negotiation, and altruism. In contrast to individually rational models, where each agent seeks to maximize its own welfare without regard for others, socially rational agents have interests beyond themselves. Such models require a new type of utility function a social utility to ensure three desirable properties: (a) conditional preferences agents may adjust their preferences to account for the preferences of others; (b) endogeny group preferences are determined internally by interactions between individual agents; (c) framing invariance reformulations of the …


Beating The Spin-Down Limit On Gravitational Wave Emission From The Crab Pulsar, B. Abbott, R. Abbott, R. Adhikari, P. Ajith, B. Allen, G. Allen, R. Amin, S. B. Anderson, W. G. Anderson, M. A. Arain, M. Araya, H. Armandula, P. Armor, Y. Aso, S. Aston, P. Aufmuth, C. Aulbert, S. Babak, S. Ballmer, H. Bantilan, B. C. Barish, C. Barker, D. Barker, B. Barr, P. Barriga, M. A. Barton, M. Bastarrika, K. Bayer, J. Betzwieser, P. T. Beyersdorf, I. A. Bilenko, Tiffany Z. Summerscales Jan 2008

Beating The Spin-Down Limit On Gravitational Wave Emission From The Crab Pulsar, B. Abbott, R. Abbott, R. Adhikari, P. Ajith, B. Allen, G. Allen, R. Amin, S. B. Anderson, W. G. Anderson, M. A. Arain, M. Araya, H. Armandula, P. Armor, Y. Aso, S. Aston, P. Aufmuth, C. Aulbert, S. Babak, S. Ballmer, H. Bantilan, B. C. Barish, C. Barker, D. Barker, B. Barr, P. Barriga, M. A. Barton, M. Bastarrika, K. Bayer, J. Betzwieser, P. T. Beyersdorf, I. A. Bilenko, Tiffany Z. Summerscales

Faculty Publications

We present direct upper limits on gravitational wave emission from the Crab pulsar using data from the first 9 months of the fifth science run of the Laser Interferometer Gravitational-wave Observatory (LIGO). These limits are based on two searches. In the first we assume that the gravitational wave emission follows the observed radio timing, giving an upper limit on gravitational wave emission that beats indirect limits inferred from the spin-down and braking index of the pulsar and the energetics of the nebula. In the second we allow for a small mismatch between the gravitational and radio signal frequencies and interpret …


First Joint Search For Gravitational-Wave Bursts In Ligo And Geo 600 Data, B. Abbott, R. Abbott, R. Adhikari, P. Ajith, B. Allen, G. Allen, R. Amin, S. B. Anderson, W. G. Anderson, M. A. Arain, M. Araya, H. Armandula, P. Armor, Y. Aso, S. Aston, P. Aufmuth, C. Aulbert, S. Babak, S. Ballmer, H. Bantilan, B. C. Barish, C. Barker, D. Barker, B. Barr, P. Barriga, M. A. Barton, I. Bartos, M. Bastarrika, K. Bayer, J. Betzwieser, P. T. Beyersdorf, Tiffany Z. Summerscales Jan 2008

First Joint Search For Gravitational-Wave Bursts In Ligo And Geo 600 Data, B. Abbott, R. Abbott, R. Adhikari, P. Ajith, B. Allen, G. Allen, R. Amin, S. B. Anderson, W. G. Anderson, M. A. Arain, M. Araya, H. Armandula, P. Armor, Y. Aso, S. Aston, P. Aufmuth, C. Aulbert, S. Babak, S. Ballmer, H. Bantilan, B. C. Barish, C. Barker, D. Barker, B. Barr, P. Barriga, M. A. Barton, I. Bartos, M. Bastarrika, K. Bayer, J. Betzwieser, P. T. Beyersdorf, Tiffany Z. Summerscales

Faculty Publications

We present the results of the first joint search for gravitational-wave bursts by the LIGO and GEO 600 detectors. We search for bursts with characteristic central frequencies in the band 768-2048 Hz in the data acquired between 22 February and 23 March, 2005 (fourth LSC Science Run-S4). We discuss the inclusion of the GEO 600 data in the Waveburst-CorrPower pipeline that first searches for coincident excess power events without taking into account differences in the antenna responses or strain sensitivities of the various detectors. We compare the performance of this pipeline to that of the coherent Waveburst pipeline based on …


Digital Germany: Virtual Archives, Powerful Portals, Wise Wikis, Richard Hacken Dec 2007

Digital Germany: Virtual Archives, Powerful Portals, Wise Wikis, Richard Hacken

Faculty Publications

Presented in the Winter 2006-2007 issue of the Global Resources Newsletter, the German-North American Resources Partnership issue. Online portals and digital gateways into focused subject and area studies are both boons and blessings. For German Studies but even more extensively, for all disciplines relevant to the German-North American Resources Partnership this past year has seen explosive growth in the preparation, expansion, proofing, and proclamation of virtual libraries, scholarly digital projects, and multidisciplinary portals. German digital scholarship has reached a maturity that calls for the types of systematic registry and centralized access that are vital to researchers from Aachen to Zzyzx.


Tidal Asymmetry And Residual Circulation Over Linear Sandbanks And Their Implication On Sediment Transport: A Process-Oriented Numerical Study, Rosario Sanay, George Voulgaris, John C. Warner Dec 2007

Tidal Asymmetry And Residual Circulation Over Linear Sandbanks And Their Implication On Sediment Transport: A Process-Oriented Numerical Study, Rosario Sanay, George Voulgaris, John C. Warner

Faculty Publications

A series of process-oriented numerical simulations is carried out in order to evaluate the relative role of locally generated residual flow and overtides on net sediment transport over linear sandbanks. The idealized bathymetry and forcing are similar to those present in the Norfolk Sandbanks, North Sea. The importance of bottom drag parameterization and bank orientation with respect to the ambient flow is examined in terms of residual flow and overtide generation, and subsequent sediment transport implications are discussed. The results show that although the magnitudes of residual flow and overtides are sensitive to bottom roughness parameterization and bank orientation, the …


Multijet Production At Low XBj In Deep Inelastic Scattering At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, M. Jechow, N. Pavel, A. G. Yagües Molina, S. Antonelli, P. Antonioli, G. Bari, M. Basile, L. Bellagamba, M. Bindi, D. Boscherini, A. Bruni, G. Bruni, L. Cifarelli, F. Cindolo, A. Contin, M. Corradi, S. De Pasquale, G. Iacobucci, A. Margotti, R. Nania, A. Polini, G. Sartorelli, A. Zichichi Dec 2007

Multijet Production At Low XBj In Deep Inelastic Scattering At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, M. Jechow, N. Pavel, A. G. Yagües Molina, S. Antonelli, P. Antonioli, G. Bari, M. Basile, L. Bellagamba, M. Bindi, D. Boscherini, A. Bruni, G. Bruni, L. Cifarelli, F. Cindolo, A. Contin, M. Corradi, S. De Pasquale, G. Iacobucci, A. Margotti, R. Nania, A. Polini, G. Sartorelli, A. Zichichi

Faculty Publications

Inclusive dijet and trijet production in deep inelastic ep scattering has been measured for 10 < Q2 < 100 GeV2 and low Bjorken x, 10-4 < xBj < 10-2. The data were taken at the HERA ep collider with centre-of-mass energy sqrt(s) = 318 GeV using the ZEUS detector and correspond to an integrated luminosity of 82 pb-1. Jets were identified in the hadronic centre-of-mass (HCM) frame using the kT cluster algorithm in the longitudinally invariant inclusive mode. Measurements of dijet and trijet differential cross sections are presented as functions of Q2, xBj, jet transverse energy, and jet pseudorapidity. As a further examination of low-xBj dynamics, multi-differential cross sections as functions of the jet correlations in transverse momenta, azimuthal angles, and pseudorapidity are also presented. Calculations at O (αs3) generally describe the trijet data well and improve the description of the dijet data compared to the calculation at O (αs2). © 2007 Elsevier B.V. All rights reserved.


Measurement Of (Anti)Deuteron And (Anti)Proton Production In Dis At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, M. Jechow, N. Pavel, A. G. Yagües Molina, S. Antonelli, P. Antonioli, G. Bari, M. Basile, L. Bellagamba, M. Bindi, D. Boscherini, A. Bruni, G. Bruni, L. Cifarelli, F. Cindolo, A. Contin, M. Corradi, S. De Pasquale, G. Iacobucci, A. Margotti, R. Nania, A. Polini, G. Sartorelli, A. Zichichi Dec 2007

Measurement Of (Anti)Deuteron And (Anti)Proton Production In Dis At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, M. Jechow, N. Pavel, A. G. Yagües Molina, S. Antonelli, P. Antonioli, G. Bari, M. Basile, L. Bellagamba, M. Bindi, D. Boscherini, A. Bruni, G. Bruni, L. Cifarelli, F. Cindolo, A. Contin, M. Corradi, S. De Pasquale, G. Iacobucci, A. Margotti, R. Nania, A. Polini, G. Sartorelli, A. Zichichi

Faculty Publications

The first observation of (anti)deuterons in deep inelastic scattering at HERA has been made with the ZEUS detector at a centre-of-mass energy of 300-318 GeV using an integrated luminosity of 120 pb-1. The measurement was performed in the central rapidity region for transverse momentum per unit of mass in the range 0.3 < pT / M < 0.7. The particle rates have been extracted and interpreted in terms of the coalescence model. The (anti)deuteron production yield is smaller than the (anti)proton yield by approximately three orders of magnitude, consistent with the world measurements. © 2007 Elsevier B.V. All rights reserved.


Recoil Velocities From Equal-Mass Binary Black-Hole Mergers: A Systematic Investigation Of Spin-Orbit Aligned Configurations, Denis Pollney, Christian Reisswig, Luciano Rezzolla, Béla Szilágyi, Marcus Ansorg, Barrett Deris, Peter Diener, Ernst Nils Dorband, Michael Koppitz, Alessandro Nagar, Erik Schnetter Dec 2007

Recoil Velocities From Equal-Mass Binary Black-Hole Mergers: A Systematic Investigation Of Spin-Orbit Aligned Configurations, Denis Pollney, Christian Reisswig, Luciano Rezzolla, Béla Szilágyi, Marcus Ansorg, Barrett Deris, Peter Diener, Ernst Nils Dorband, Michael Koppitz, Alessandro Nagar, Erik Schnetter

Faculty Publications

Binary black-hole systems with spins aligned with the orbital angular momentum are of special interest, as studies indicate that this configuration is preferred in nature due to non-vacuum environmental interactions, as well as post-Newtonian (PN) spin-orbit couplings. If the spins of the two bodies differ, there can be a prominent beaming of the gravitational radiation during the late plunge, causing a recoil of the final merged black hole. In this paper we perform an accurate and systematic study of recoil velocities from a sequence of equal-mass black holes whose spins are aligned with the orbital angular momentum, and whose individual …


). Size Dependency Of The Elastic Modulus Of Zno Nanowires: Surface Stress Effect, Guofeng Wang, Xiaodong Li Dec 2007

). Size Dependency Of The Elastic Modulus Of Zno Nanowires: Surface Stress Effect, Guofeng Wang, Xiaodong Li

Faculty Publications

Relation between the elastic modulus and the diameter (D) of ZnOnanowires was elucidated using a model with the calculated ZnOsurface stresses as input. We predict for ZnOnanowires due to surface stress effect: (1) when D>20nm, the elastic modulus would be lower than the bulk modulus and decrease with the decreasing diameter, (2) when 20nm>D>2nm, the nanowires with a longer length and a wurtzite crystal structure could be mechanically unstable, and (3) when D<2nm, the elastic modulus would be higher than that of the bulk value and increase with a decrease in nanowire diameter.


Moments And Commutators Of Probability Measures, Luigi Accardi, Hui Hsiung Kuo, Aurel Stan Dec 2007

Moments And Commutators Of Probability Measures, Luigi Accardi, Hui Hsiung Kuo, Aurel Stan

Faculty Publications

Let a0, a- and a+ be the preservation, annihilation, and creation operators of a probability measure μ on ℝd, respectively. The operators a0 and [a -, a+] are proven to uniquely determine the moments of μ. We discuss the question: "What conditions must two families of operators satisfy, in order to ensure the existence of a probability measure, having finite moments of any order, so that, its associated preservation operators and commutators between the annihilation and creation operators are the given families of operators?" For the case d = 1, a satisfactory answer to this question is obtained as a …


Superexponential Distortion Of Subgroups Of Cat(-1) Groups, Josh Barnard, Noel Brady, Pallavi Dani Dec 2007

Superexponential Distortion Of Subgroups Of Cat(-1) Groups, Josh Barnard, Noel Brady, Pallavi Dani

Faculty Publications

We construct 2 -dimensional CAT(1) groups which contain free subgroups with arbitrary iterated exponential distortion, and with distortion higher than any iterated exponential. © 2007 Mathematical Sciences Publishers.


Dijet Production In Diffractive Deep Inelastic Scattering At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, M. Jechow, N. Pavel, A. G. Yagües Molina, S. Antonelli, P. Antonioli, G. Bari, M. Basile, L. Bellagamba, M. Bindi, D. Boscherini, A. Bruni, G. Bruni, L. Cifarelli, F. Cindolo, A. Contin, M. Corradi, S. De Pasquale, G. Iacobucci, A. Margotti, R. Nania, A. Polini, G. Sartorelli, A. Zichichi Dec 2007

Dijet Production In Diffractive Deep Inelastic Scattering At Hera, S. Chekanov, M. Derrick, S. Magill, B. Musgrave, D. Nicholass, J. Repond, R. Yoshida, Margarita C. K. Mattingly, M. Jechow, N. Pavel, A. G. Yagües Molina, S. Antonelli, P. Antonioli, G. Bari, M. Basile, L. Bellagamba, M. Bindi, D. Boscherini, A. Bruni, G. Bruni, L. Cifarelli, F. Cindolo, A. Contin, M. Corradi, S. De Pasquale, G. Iacobucci, A. Margotti, R. Nania, A. Polini, G. Sartorelli, A. Zichichi

Faculty Publications

The production of dijets in diffractive deep inelastic scattering has been measured with the ZEUS detector at HERA using an integrated luminosity of 61 pb-1. The dijet cross section has been measured for virtualities of the exchanged virtual photon, 5 < Q2 < 100 GeV2, and γ*p centre-of-mass energies, 100 < W < 250 GeV. The jets, identified using the inclusive kT algorithm in the γ*p frame, were required to have a transverse energy E* T,jet > 4 GeV and the jet with the highest transverse energy was required to have E* T,jet > 5 GeV. All jets were required to be in the pseudorapidity range -3.5


Hunting For Hydrothermal Vents Along The Galápagos Spreading Center, Rachel M. Haymon, Edward T. Baker, Joseph A. Resing, Scott M. White, Ken C. Macdonald Dec 2007

Hunting For Hydrothermal Vents Along The Galápagos Spreading Center, Rachel M. Haymon, Edward T. Baker, Joseph A. Resing, Scott M. White, Ken C. Macdonald

Faculty Publications

No abstract provided.


New Ways To Collect Data In The Antarctic, Walker O. Smith, Vernon Asper Nov 2007

New Ways To Collect Data In The Antarctic, Walker O. Smith, Vernon Asper

Faculty Publications

Conducting Antarctic research is challenging. Not only is the environment difficult, given low temperatures, high winds, and ice cover, but also the availability of sampling platforms is limited. The U.S. National Science Foundation has only two vessels that can routinely operate in ice‐covered waters, the research vessel/icebreaker N.B. Palmer and the Antarctic research support vessel L.M. Gould. The restricted availability of vessels makes research operations difficult to schedule, especially during austral spring and summer. Traditional sampling methods (those confined to ships and moorings) have provided insights into distributions and processes in the Southern Ocean, but new research questions require new …


1,3,7,10,14,17,21,28,31,42,52,55-Dodeca­Kis(Trifluoro­Meth­Yl)- 1,3,7,10,14,17,21,28,31,42,52,55-Dodeca­Hydro­(C60-IH)[5,6]Fullerene, Natalia B. Shustova Prof. Dr., O.P. Anderson, O. V. Boltalina, S. H. Strauss, I. E. Kareev Nov 2007

1,3,7,10,14,17,21,28,31,42,52,55-Dodeca­Kis(Trifluoro­Meth­Yl)- 1,3,7,10,14,17,21,28,31,42,52,55-Dodeca­Hydro­(C60-IH)[5,6]Fullerene, Natalia B. Shustova Prof. Dr., O.P. Anderson, O. V. Boltalina, S. H. Strauss, I. E. Kareev

Faculty Publications

The title compound, C72F36, is one of four isomers of C60(CF3)12 for which crystal structures have been obtained. The fullerene mol­ecule has an idealized Ih C60 core with the 12 CF3 groups arranged in an asymmetric fashion on two ribbons of edge-sharing C6(CF3)2 hexa­gons, a para–meta–para–para–para–meta–para ribbon and a para–meta–para ribbon, giving an overall pmp 3 mp,pmp structure. There are no cage Csp 3 …


Index Theorems For Quantum Graphs, S. A. Fulling, P. Kuchment, J. H. Wilson Nov 2007

Index Theorems For Quantum Graphs, S. A. Fulling, P. Kuchment, J. H. Wilson

Faculty Publications

In geometric analysis, an index theorem relates the difference of the numbers of solutions of two differential equations to the topological structure of the manifold or bundle concerned, sometimes using the heat kernels of two higher order differential operators as an intermediary. In this paper, the case of quantum graphs is addressed. A quantum graph is a graph considered as a (singular) one-dimensional variety and equipped with a second-order differential Hamiltonian H (a 'Laplacian') with suitable conditions at vertices. For the case of scale-invariant vertex conditions (i.e. conditions that do not mix the values of functions and of their derivatives), …


Quantum Interferometric Sensors, Kishore T. Kapale, Leo D. Didomenico, Hwang Lee, Pieter Kok, Jonathan P. Dowling Nov 2007

Quantum Interferometric Sensors, Kishore T. Kapale, Leo D. Didomenico, Hwang Lee, Pieter Kok, Jonathan P. Dowling

Faculty Publications

Quantum entanglement has the potential to revolutionize the entire field of interferometric sensing by providing many orders of magnitude improvement in interferometer sensitivity. The quantum-entangled particle interferometer approach is very general and applies to many types of interferometers. In particular, without nonlocal entanglement, a generic classical interferometer has a statistical-sampling shot-noise limited sensitivity that scales like 1/√N, where N is the number of particles passing through the interferometer per unit time. However, if carefully prepared quantum correlations are engineered between the particles, then the interferometer sensitivity improves by a factor of √ to scale like I/N, which is the limit …


Relationship Between Vegetation Biophysical Properties And Surface Temperature Using Multisensor Satellite Data, Seungbum Hong, Venkataraman Lakshmi, Eric Small Nov 2007

Relationship Between Vegetation Biophysical Properties And Surface Temperature Using Multisensor Satellite Data, Seungbum Hong, Venkataraman Lakshmi, Eric Small

Faculty Publications

Vegetation is an important factor in global climatic variability and plays a key role in the complexinteractions between the land surface and the atmosphere. This study focuses on the spatial and temporalvariability of vegetation and its relationship with land–atmosphere interactions. The authors have analyzedthe vegetation water content (VegWC) from the Advanced Microwave Scanning Radiometer for EOS(AMSR-E), the leaf area index (LAI), the normalized difference vegetation index (NDVI), the land surfacetemperature (Ts), and the Moderate Resolution Imaging Spectroradiometer (MODIS). Three regions,which have climatically differing characteristics, have been selected: the North America Monsoon System(NAMS) region, the Southern Great Plains (SGP) region, and …


Real Space Information From Fluctuation Electron Microscopy: Applications To Amorphous Silicon, Parthapratim Biswas, Raymond Atta-Fynn, S. Chakraborty, D. A. Drabold Nov 2007

Real Space Information From Fluctuation Electron Microscopy: Applications To Amorphous Silicon, Parthapratim Biswas, Raymond Atta-Fynn, S. Chakraborty, D. A. Drabold

Faculty Publications

Ideal models of complex materials must satisfy all available information about the system. Generally, this information consists of experimental data, information implicit to sophisticated interatomic interactions and potentially other a priori information. By jointly imposing first-principles or tight-binding information in conjunction with experimental data, we have developed a method: experimentally constrained molecular relaxation (ECMR) that uses all of the information available. We apply the method to model medium range order in amorphous silicon using fluctuation electron microscopy (FEM) data as experimental information. The paracrystalline model of medium range order is examined, and a new model based on voids in amorphous …


Entanglement-Assisted Quantum Error Correction With Linear Optics, Mark M. Wilde, Hari Krovi, Todd A. Brun Nov 2007

Entanglement-Assisted Quantum Error Correction With Linear Optics, Mark M. Wilde, Hari Krovi, Todd A. Brun

Faculty Publications

We construct a theory of continuous-variable entanglement-assisted quantum error correction. We present an example of a continuous-variable entanglement-assisted code that corrects for an arbitrary single-mode error. We also show how to implement encoding circuits using passive optical devices, homodyne measurements, feedforward classical communication, conditional displacements, and off-line squeezers. © 2007 The American Physical Society.


A Nondestructive Technique For Determining Complex Permittivity And Permeability Of Magnetic Sheet Materials Using Two Flanged Rectangular Waveguides, Milo W. Hyde Iv, Michael J. Havrilla Nov 2007

A Nondestructive Technique For Determining Complex Permittivity And Permeability Of Magnetic Sheet Materials Using Two Flanged Rectangular Waveguides, Milo W. Hyde Iv, Michael J. Havrilla

Faculty Publications

In this paper, a nondestructive technique for determining the complex permittivity and permeability of magnetic sheet materials using two flanged rectangular waveguides is presented. The technique extends existing single probe methods by its ability to simultaneously measure reflection and transmission coefficients imperative for extracting both permittivity and permeability over all frequencies. Using Love’s Equivalence Principle, a system of coupled magnetic field integral equations (MFIEs) is formed. Evaluation of one of the two resulting spectral domain integrals via complex plane integration is discussed. The system, solved via the Method of Moments (MoM),yields theoretical values for the reflection and transmission coefficients. These …


Is A 3-Mm Intrafractional Margin Sufficient For Daily Image-Guided Intensity-Modulated Radiation Therapy Of Prostate Cancer?, Adam D. Melancon, Jennifer C. O'Daniel, Lifei Zhang, Rajat J. Kudchadker, Deborah A. Kuban, Andrew K. Lee, Rex M. Cheung, Renaud De Crevoisier, Susan L. Tucker, Wayne D. Newhauser, Radhe Mohan, Lei Dong Nov 2007

Is A 3-Mm Intrafractional Margin Sufficient For Daily Image-Guided Intensity-Modulated Radiation Therapy Of Prostate Cancer?, Adam D. Melancon, Jennifer C. O'Daniel, Lifei Zhang, Rajat J. Kudchadker, Deborah A. Kuban, Andrew K. Lee, Rex M. Cheung, Renaud De Crevoisier, Susan L. Tucker, Wayne D. Newhauser, Radhe Mohan, Lei Dong

Faculty Publications

Purpose: To determine whether a 3-mm isotropic target margin adequately covers the prostate and seminal vesicles (SVs) during administration of an intensity-modulated radiation therapy (IMRT) treatment fraction, assuming that daily image-guided setup is performed just before each fraction. Materials and methods: In-room computed tomographic (CT) scans were acquired immediately before and after a daily treatment fraction in 46 patients with prostate cancer. An eight-field IMRT plan was designed using the pre-fraction CT with a 3-mm margin and subsequently recalculated on the post-fraction CT. For convenience of comparison, dose plans were scaled to full course of treatment (75.6 Gy). Dose coverage …


Are There Rearrangement Hotspots In The Human Genome?, Max A. Alekseyev, Pavel A. Pevzner Nov 2007

Are There Rearrangement Hotspots In The Human Genome?, Max A. Alekseyev, Pavel A. Pevzner

Faculty Publications

In a landmark paper, Nadeau and Taylor [18] formulated the random breakage model (RBM) of chromosome evolution that postulates that there are no rearrangement hotspots in the human genome. In the next two decades, numerous studies with progressively increasing levels of resolution made RBM the de facto theory of chromosome evolution. Despite the fact that RBM had prophetic prediction power, it was recently refuted by Pevzner and Tesler [4], who introduced the fragile breakage model (FBM), postulating that the human genome is a mosaic of solid regions (with low propensity for rearrangements) and fragile regions (rearrangement hotspots). However, the rebuttal …


Comparison Of Probabilistic Boolean Network And Dynamic Bayesian Network Approaches For Inferring Gene Regulatory Networks, Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng Nov 2007

Comparison Of Probabilistic Boolean Network And Dynamic Bayesian Network Approaches For Inferring Gene Regulatory Networks, Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng

Faculty Publications

Background: The regulation of gene expression is achieved through gene regulatory networks (GRNs) in which collections of genes interact with one another and other substances in a cell. In order to understand the underlying function of organisms, it is necessary to study the behavior of genes in a gene regulatory network context. Several computational approaches are available for modeling gene regulatory networks with different datasets. In order to optimize modeling of GRN, these approaches must be compared and evaluated in terms of accuracy and efficiency.

Results: In this paper, two important computational approaches for modeling gene regulatory networks, …


Rheology Of Tin Fluorophosphate Glass/Polyamide 12 Hybrids In The Low Concentration Regime, Kevin Urman, Thomas Schweizer, Joshua U. Otaigbe Nov 2007

Rheology Of Tin Fluorophosphate Glass/Polyamide 12 Hybrids In The Low Concentration Regime, Kevin Urman, Thomas Schweizer, Joshua U. Otaigbe

Faculty Publications

Phosphate glass (Pglass)/polymer hybrids are a unique material class that promises to help fulfill the growing need for new advanced materials. Rheological investigations into Pglass/polyamide 12 hybrids have shown a strong dependence on temperature and composition. Strong negative deviations from the log-additivity rule are also observed for these materials as well as a reduction in the activation energy for viscous flow. Hybrids containing < 2 vol. % Pglass are theologically simple fluids that display temperature independence in plots of storage modulus versus loss modulus. Hybrids containing >= 2 vol. % Pglass are rheologically complex and do not obey the time-temperature superposition principle. Through application of Han plots, we identified a structural change that occurs in hybrids containing >= 2 vol. % Pglass at …


Measurement And Evaluation Of Blade Passage Frequency Fluctuations (A), Cole V. Duke, Scott D. Sommerfeldt, Kent L. Gee, Connor R. Duke Nov 2007

Measurement And Evaluation Of Blade Passage Frequency Fluctuations (A), Cole V. Duke, Scott D. Sommerfeldt, Kent L. Gee, Connor R. Duke

Faculty Publications

In the active control of tonal noise from cooling fans, one factor that can limit the achievable attenuation is fluctuation of the blade passage frequency in time. Large fluctuations in a short time can hinder the algorithm from converging to the optimal solution. Some fans have steadier speeds than others, which can be due to unsteady driving mechanisms or the physical structure of the fan. Environmental effects, such as back pressure and unsteady blade loading, can also cause the fan speed to fluctuate. The shifting in the blade passage frequency will be measured using a zero-crossing technique to track the …


Polarization Rotation Correction In Radiometry: An Error Analysis, David G. Long, Derek Hudson, Jeffrey R. Piepmeier Nov 2007

Polarization Rotation Correction In Radiometry: An Error Analysis, David G. Long, Derek Hudson, Jeffrey R. Piepmeier

Faculty Publications

Yueh proposed a method of using the third Stokes parameter TU to correct brightness temperatures such as Tv and Th for polarization rotation. This paper presents an extended error analysis of the estimation of Tv , Th, and TQ equiv Tv - Th by Yueh's method. In order to carry out the analysis, we first develop a forward model of polarization rotation that accounts for the random nature of thermal radiation, receiver noise, and (to first order) calibration. Analytic formulas are then derived for the bias, standard deviation (STD), and root-mean-square error (RMSE) of estimated TQ, Tv , and Th, …


Analyzing Gene Relationships For Down Syndrome With Labeled Transition Graphs, Hyrum Carroll, Mark J. Clement, Eric G. Mercer, Neha Rungta, Quinn O. Snell, Randall J. Roper Nov 2007

Analyzing Gene Relationships For Down Syndrome With Labeled Transition Graphs, Hyrum Carroll, Mark J. Clement, Eric G. Mercer, Neha Rungta, Quinn O. Snell, Randall J. Roper

Faculty Publications

The relationship between changes in gene expression and physical characteristics associated with Down syndrome is not well understood. Chromosome 21 genes interact with nonchromosome 21 genes to produce Down syndrome characteristics. This indirect influence, however, is difficult to empirically define due to the number, size, and complexity of the involved gene regulatory networks. This work links chromosome 21 genes to non-chromosome 21 genes known to interact in a Down syndrome phenotype through a reachability analysis of labeled transition graphs extracted from published gene regulatory network databases. The analysis provides new relations in a recently discovered link between a specific gene …