Digital Commons Network^™

De Novo Transcriptome Assembly Of The Green Alga Ankistrodesmus Falcatus, Rachel A. Schomaker, Jeffry L. Dudycha

Faculty Publications

Ankistrodesmus falcatus is a globally distributed freshwater chlorophyte that is a candidate for biofuel production, is used to study the effects of toxins on aquatic communities, and is used as food in zooplankton research. Each of these research fields is transitioning to genomic tools. We created a reference transcriptome for of A. falcatus using NextGen sequencing and de novo assembly methods including Trinity, Velvet-Oases, and EvidentialGene. The assembled transcriptome has a total of 17,997 contigs, an N50 value of 2,462, and a GC content of 64.8%. BUSCO analysis recovered 83.3% of total chlorophyte BUSCOs and 82.5% of the eukaryotic …

Resolving Anodic Current And Temperature Distributions In A Polymer Electrolyte Membrane Water Electrolysis Cell Using A Pseudo-Two-Phase Computational Fluid Dynamics Model, J. Lopata, Z. Kang, J. Young, G. Bender, J. W. Weidner, H-S. Cho, Sirivatch Shimpalee

Faculty Publications

Expanding upon our prior experimental work, we constructed a three-dimensional model of a polymer electrolyte membrane water electrolyzer using computational fluid dynamics. We applied the assumption of pseudo-two-phase flow, the flow of two phases with equal velocity. Experimental data were used to obtain parameters and to determine the conditions under which this model was valid. Anodic distributions of current density, temperature, liquid saturation, and relative humidity were obtained at various flow rates. The overall current density and temperature difference from inlet to outlet at the anode agreed strongly with experimental measurements under most circumstances. This verification allowed us to further …

Pyrolysis Kinetics Of Wildland Vegetation Using Model-Fitting Methods, Ellie Amini, Mohammad-Saeed Safdari, Nathan Johnson Brigham, David R. Weise, Thomas H. Fletcher

Faculty Publications

Slow-heating pyrolysis experiments of 14 plant species native to forests in the southern United States were conducted in a TGA to find the kinetic parameters for slow pyrolysis of all live and air-dried plant samples. Kinetic coefficients were determined from the data using model-fitting methods, resulting in single kinetic parameters for the entire pyrolysis process which can be used by wildland fire modelers. The model forms explored here are a simple one-step model and single and multiple reaction distributed activation energy (DAE) models. The mass loss and derivative mass loss data were fitted simultaneously at heating rates of 10, 20, …

Beyond Structural Motifs: The Frontier Of Actinide-Containing Metal–Organic Frameworks, Corey R. Martin, Gabrielle A. Leith, Natalia B. Shustova Prof. Dr.

Faculty Publications

In this perspective, we feature recent advances in the field of actinide-containing metal–organic frameworks (An-MOFs) with a main focus on their electronic, catalytic, photophysical, and sorption properties. This discussion deviates from a strictly crystallographic analysis of An-MOFs, reported in several reviews, or synthesis of novel structural motifs, and instead delves into the remarkable potential of An-MOFs for evolving the nuclear waste administration sector. Currently, the An-MOF field is dominated by thorium- and uranium-containing structures, with only a few reports on transuranic frameworks. However, some of the reported properties in the field of An-MOFs foreshadow potential implementation of these materials and …

Beyond Structural Motifs: The Frontier Of Actinide-Containing Metal–Organic Frameworks, Corey R. Martin, Gabrielle A. Leith, Natalia B. Shustova

Faculty Publications

In this perspective, we feature recent advances in the field of actinide-containing metal-organic frameworks (An-MOFs) with a main focus on their electronic, catalytic, photophysical, and sorption properties. This discussion deviates from a strictly crystallographic analysis of An-MOFs, reported in several reviews, or synthesis of novel structural motifs, and instead delves into the remarkable potential of An-MOFs for evolving the nuclear waste administration sector. Currently, the An-MOF field is dominated by thorium- and uranium-containing structures, with only a few reports on transuranic frameworks. However, some of the reported properties in the field of An-MOFs foreshadow potential implementation of these materials and …

Nanoantibiotics: Functions And Properties At The Nanoscale To Combat Antibiotic Resistance, M. Mustafa Mamun, Adeola Julian Sorinolu, Mariya Munir, Eric P. Vejerano

Faculty Publications

One primary mechanism for bacteria developing resistance is frequent exposure to antibiotics. Nanoantibiotics (nAbts) is one of the strategies being explored to counteract the surge of antibiotic resistant bacteria. nAbts are antibiotic molecules encapsulated with engineered nanoparticles (NPs) or artificially synthesized pure antibiotics with a size range of ≤100 nm in at least one dimension. NPs may restore drug efficacy because of their nanoscale functionalities. As carriers and delivery agents, nAbts can reach target sites inside a bacterium by crossing the cell membrane, interfering with cellular components, and damaging metabolic machinery. Nanoscale systems deliver antibiotics at enormous particle number concentrations. …

Environmentally Persistent Free Radicals As Sources Of Pops, Eric P. Vejerano, Jeonghyeon Ahn, Junaid Latif, Mustafa Mamun

Faculty Publications

Environmentally persistent free radicals (EPFRs) are a new class organic pollutant sharing some of the attributes of persistent organic pollutants (POPs). This opinion/short review aims to describe the properties of EPFRs that merit their recognition as an additional and potentially significant source of POPs. EPFRs are ubiquitous in diverse environments because of multiple factors: (1) organic precursors from anthropogenic, biogenic, and other natural emission sources are abundant; multiple mechanisms in PM and soils form (2) EPFRs; and (3) EPFRs are stable and persist for a long time, thereby, accumulate in the environment and potentially transported long range. The hazards of …

The Korea–United States Air Quality (Korus-Aq) Field Study, James H. Crawford, Joon-Youg Ahn, Jassim Al-Saadi, Limseok Chang, Louisa K. Emmons, Jhoon Kim, Gangwoong Lee, Jeong-Hoo Park, Rokjin J. Park, Jung Hun Woo, Chang-Keun Song, Ji-Hyung Hong, You-Deog Hong, Barry L. Lefer, Meehye Lee, Taehyoung Lee, Saewung Kim, Kyung-Eun Min, Seong Soo Yum, Hye Jung Shin, Young-Woo Kim, Jin-Soo Choi, Jin-Soo Park, James J. Szykman, Russell W. Long, Carolyn E. Jordan, Isobel J. Simpson, Alan Fried, Jack E. Dibb, Seogyeon Cho, Yong Pyo Kim

Faculty Publications

The Korea–United States Air Quality (KORUS-AQ) field study was conducted during May–June 2016. The effort was jointly sponsored by the National Institute of Environmental Research of South Korea and the National Aeronautics and Space Administration of the United States. KORUS-AQ offered an unprecedented, multi-perspective view of air quality conditions in South Korea by employing observations from three aircraft, an extensive ground-based network, and three ships along with an array of air quality forecast models. Information gathered during the study is contributing to an improved understanding of the factors controlling air quality in South Korea. The study also provided a valuable …

Covid-19: A Syndemic Requiring An Integrated Approach For Marginalized Populations, Rosemary M. Caron, Amanda Rodrigues Amorim Adegboye

Faculty Publications

The novel coronavirus, SARS-CoV-2, responsible for the COVID-19 pandemic, has challenged healthcare systems globally. The health inequities experienced by immigrants, refugees, and racial/ethnic minorities have been aggravated during the COVID-19 pandemic. The socioeconomic, political, and demographic profile of these vulnerable populations places them at increased risk of contracting COVID-19 and experiencing significant morbidity and mortality. Thus, the burden of the COVID-19 pandemic is disproportionally higher among these at-risk groups. The purpose of this perspective is to: (1) highlight the interactions among the social determinants of health (SDoH) and their bi-directional relationship with the COVID-19 pandemic which results in the current …

Differences In Effectiveness And Use Of Laparoscopic Surgery In Locally Advanced Colon Cancer Patients, M. Schootman, Matthew Mutch, T. Loux, Jan M. Eberth Ph.D., N. O. Davidson

Faculty Publications

Patients with locally advanced colon cancer have worse outcomes. Guidelines of various organizations are conflicting about the use of laparoscopic colectomy (LC) in locally advanced colon cancer. We determined whether patient outcomes of LC and open colectomy (OC) for locally advanced (T4) colon cancer are comparable in all colon cancer patients, T4a versus T4b patients, obese versus non-obese patients, and tumors located in the ascending, descending, and transverse colon. We used data from the 2013–2015 American College of Surgeons’ National Surgical Quality Improvement Program. Patients were diagnosed with nonmetastatic pT4 colon cancer, with or without obstruction, and underwent LC (n …

Study Of The Reactions E + E - → 2 (Π + Π -) Π 0 Π 0 Π 0 And 2(Π + Π - ) Π 0 Π 0 Η At Center-Of-Mass Energies From Threshold To 4.5 Gev Using Initial-State Radiation, J.P. Lees, V. Poireau, V. Tisserand, E. Grauges, A. Palano, G. Eigen, D. N. Brown, Yu. G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, R. Cheaib, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, V. P. Druzhinin, Milind Purohit, Et. Al.

Faculty Publications

We study the processes e⁺e⁻→ 2(π⁺π⁻)π⁰π⁰π⁰γ and 2(π⁺π⁻)π⁰π⁰ηγ in which an energetic photon is radiated from the initial state. The data were collected with the BABAR detector at SLAC. About 14 000 and 4700 events, respectively, are selected from a data sample corresponding to an integrated luminosity of 469 fb⁻¹. The invariant mass of the hadronic final state defines the effective e⁺e⁻ center-of-mass energy. The center-of-mass energies range from threshold to 4.5 GeV. …

The Impact Of Aquaculture On The Genetics And Distribution Of The Onuphid Annelid Diopatra Biscayensis, Matthew P. Galaska, David S. Wethey, Andrés Arias, Stanislas F. Dubois, Kenneth M. Halanych, Sarah A. Woodin

Faculty Publications

Aim

Evolutionary history of natural populations can be confounded by human intervention such as the case of decorator worm species Diopatra (Onuphidae), which have a history of being transported through anthropogenic activities. Because they build tubes and act as ecosystem engineers, they can have a large impact on the overall ecosystem in which they occur. One conspicuous member, Diopatra biscayensis, which was only described in 2012, has a fragmented distribution that includes the Bay of Biscay and the Normanno-Breton Gulf in the English Channel. This study explores the origin of these worms in the Normanno-Breton region, which has been …

The Impact Of Aquaculture On The Genetics And Distribution Of The Onuphid Annelid Diopatra Biscayensis, Matthew P. Galaska, David S. Wethey, Andrés Arias, Stanislas F. Dubios, Kenneth M. Halanych, Sarah A. Woodin

Faculty Publications

Aim

Evolutionary history of natural populations can be confounded by human intervention such as the case of decorator worm species Diopatra (Onuphidae), which have a history of being transported through anthropogenic activities. Because they build tubes and act as ecosystem engineers, they can have a large impact on the overall ecosystem in which they occur. One conspicuous member, Diopatra biscayensis, which was only described in 2012, has a fragmented distribution that includes the Bay of Biscay and the Normanno-Breton Gulf in the English Channel. This study explores the origin of these worms in the Normanno-Breton region, which has been …

Using Blade Element Momentum Methods With Gradient-Based Design Optimization, Andrew Ning

Faculty Publications

Blade element momentum methods are widely used for initial aerodynamic analysis of propellers and wind turbines. A wide variety of correction methods exist, but common to all variations, a pair of residuals are converged to ensure compatibility between the two theories. This paper shows how to rearrange the sequence of calculations reducing to a single residual. This yields the significant advantage that convergence can be guaranteed and to machine precision. Both of these considerations are particularly important for gradient- based optimization where a wide variety of atypical inputs may be explored, and where tight convergence is necessary for accurate derivative …

Assessment Of Normalized Water-Leaving Radiance Derived From Goci Using Aeronet-Oc Data, Mingjun He, Shuangyan He, Xiaodong Zhang, Feng Zhou, Peiliang Li

Faculty Publications

The geostationary ocean color imager (GOCI), as the world’s first operational geostationary ocean color sensor, is aiming at monitoring short-term and small-scale changes of waters over the northwestern Pacific Ocean. Before assessing its capability of detecting subdiurnal changes of seawater properties, a fundamental understanding of the uncertainties of normalized water-leaving radiance (nLw) products introduced by atmospheric correction algorithms is necessarily required. This paper presents the uncertainties by accessing GOCI-derived nLw products generated by two commonly used operational atmospheric algorithms, the Korea Ocean Satellite Center (KOSC) standard atmospheric algorithm adopted in GOCI Data Processing System (GDPS) and the NASA standard atmospheric …

Mobile App Privacy In Software Engineering Research: A Systematic Mapping Study, Fahimeh Ebrahimi, Miroslav Tushev, Anas Mahmoud

Faculty Publications

Context: Mobile applications (apps) have become deeply personal, constantly demanding access to privacy-sensitive information in exchange for more personalized user experiences. Such privacy-invading practices have generated major multidimensional privacy concerns among app users. Objective: The research on mobile app privacy has experienced rapid growth over the past decade. This line of research is aimed at systematically exposing the privacy practices of apps and proposing solutions to protect the privacy of mobile app users. In this paper, we conduct a systematic mapping study of this body of research. Our objectives are to a) explore trends in SE app privacy research, b) …

Real-Time Motion Tracking Of Cognitive Baxter Robot Based On Differential Inverse Kinematics, Shaobo Li, Xingxing Zhang, Jing Yang, Qiang Bai, Jianjun Hu, Qisong Song, Zhiang Li

Faculty Publications

The tracking motion of the robot is realized based on a specific robot or relying on an expensive movement acquisition system. It has the problems of complex control procedures, lack of real-time performance, and difficulty in achieving secondary development. We propose a robot real-time tracking control method based on the control principle of differential inverse kinematics, which fuses the position and joint angle information of the robot’s actuators to realize the real-time estimation of the user’s movement during the tracking process. The motion coordinates of each joint of the robot are calculated and the coordinate conversion between man and machine …

Speech Sound Disorders Syllabus And Unit Plan: Mini-Unit, Basic Ssd Assessment., Jenica Joseph

Faculty Publications

No abstract provided.