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Association Of Body Mass Index And Plant-Based Diet With Cognitive Impairment Among Older Chinese Adults: A Prospective, Nationwide Cohort Study, Fang Liang, Jialin Fu, Gabrielle Turner-Mcgrievy Ph.D., Rd, Yechuang Wang, Nan Qiu, Kai Ding, Jing Zeng, Justin B. Moore, Rui Li Jul 2022

Association Of Body Mass Index And Plant-Based Diet With Cognitive Impairment Among Older Chinese Adults: A Prospective, Nationwide Cohort Study, Fang Liang, Jialin Fu, Gabrielle Turner-Mcgrievy Ph.D., Rd, Yechuang Wang, Nan Qiu, Kai Ding, Jing Zeng, Justin B. Moore, Rui Li

Faculty Publications

To examine the association of body mass index (BMI) and a plant-based diet (PBD) with cognitive impairment in older adults, this cohort study used data from the Chinese Longitudinal Healthy Longevity Survey (CLHLS), a national, community-based, longitudinal, prospective study in China. Cognitive function was evaluated via the Mini-Mental State Examination (MMSE). Diet was assessed using a simplified food frequency questionnaire (FFQ), and PBD patterns were estimated using the overall plant-based diet index (PDI), the healthful plant-based diet index (hPDI), and the unhealthful plant-based diet index (uPDI). BMI was measured objectively during the physical examination. Cox proportional hazard models and restricted …


Spotted Fever Group Rickettsioses In Central America: The Research And Public Health Disparity Among Socioeconomic Lines, Kyndall C. Dye-Braumuller, Marvin S. Rodriguez Aquino, Stella C.W. Self, Mufaro Kanyangarara, Melissa Nolan Ph.D., Mph Jul 2022

Spotted Fever Group Rickettsioses In Central America: The Research And Public Health Disparity Among Socioeconomic Lines, Kyndall C. Dye-Braumuller, Marvin S. Rodriguez Aquino, Stella C.W. Self, Mufaro Kanyangarara, Melissa Nolan Ph.D., Mph

Faculty Publications

Tick-borne diseases including rickettsial diseases are increasing in incidence worldwide. Many rickettsial pathogens can cause disease which is commonly underdiagnosed and underreported; Rickettsia pathogens in the spotted fever group (SFGR) are thus classified as neglected bacterial pathogens. The Central American region shoulders a large proportion of the global neglected disease burden; however, little is known regarding SFGR disease here. Although development varies, four of the seven countries in this region have both the highest poverty rates and SFGR disease burdens (El Salvador, Honduras, Guatemala, and Nicaragua), compared to Belize, Panama, and Costa Rica. Utilizing the Human Development Index (HDI), we …


Capturing The Pool Dilution Effect In Group Testing Regression: A Bayesian Approach, Stella Self Ph.D., Ms, Christopher Mcmahan, Stefani Mokalled Jul 2022

Capturing The Pool Dilution Effect In Group Testing Regression: A Bayesian Approach, Stella Self Ph.D., Ms, Christopher Mcmahan, Stefani Mokalled

Faculty Publications

Group (pooled) testing is becoming a popular strategy for screening large populations for infectious diseases. This popularity is owed to the cost savings that can be realized through implementing group testing methods. These methods involve physically combining biomaterial (eg, saliva, blood, urine) collected on individuals into pooled specimens which are tested for an infection of interest. Through testing these pooled specimens, group testing methods reduce the cost of diagnosing all individuals under study by reducing the number of tests performed. Even though group testing offers substantial cost reductions, some practitioners are hesitant to adopt group testing methods due to the …


Completing Single-Cell Dna Methylome Profiles Via Transfer Learning Together With Kl-Divergence, Sanjeeva Dodlapati, Zongliang Jiang, Jiangwen Sun Jul 2022

Completing Single-Cell Dna Methylome Profiles Via Transfer Learning Together With Kl-Divergence, Sanjeeva Dodlapati, Zongliang Jiang, Jiangwen Sun

Faculty Publications

The high level of sparsity in methylome profiles obtained using whole-genome bisulfite sequencing in the case of low biological material amount limits its value in the study of systems in which large samples are difficult to assemble, such as mammalian preimplantation embryonic development. The recently developed computational methods for addressing the sparsity by imputing missing have their limits when the required minimum data coverage or profiles of the same tissue in other modalities are not available. In this study, we explored the use of transfer learning together with Kullback-Leibler (KL) divergence to train predictive models for completing methylome profiles with …


Sexual Stature Difference Fluctuations In Pre- And Post-Black Death London As An Indicator Of Living Standards, Emily J. Brennan, Sharon Dewitte Jul 2022

Sexual Stature Difference Fluctuations In Pre- And Post-Black Death London As An Indicator Of Living Standards, Emily J. Brennan, Sharon Dewitte

Faculty Publications

Objectives: The degree of sexual stature difference (SSD), the ratio of male to female height, is argued to be an indicator of living standards based on evidence that physical growth for males is more sensitive to environmental fluctuations. In a resource-poor environment, the degree of SSD is expected to be relatively low. The aim of this study is to comparatively assess SSD in medieval London in the context of repeated famine events and other environmental stressors before the Black Death (BD) and the improved living conditions that characterized the post-Black Death period.

Methods: To test the hypothesis that a poor …


Post-Embryonic Phase Transitions Mediated By Polycomb Repressive Complexes In Plants, Valerie Hinsch, Samuel Adkins, Darren Manuela, Mingli Xu Jul 2022

Post-Embryonic Phase Transitions Mediated By Polycomb Repressive Complexes In Plants, Valerie Hinsch, Samuel Adkins, Darren Manuela, Mingli Xu

Faculty Publications

Correct timing of developmental phase transitions is critical for the survival and fitness of plants. Developmental phase transitions in plants are partially promoted by controlling relevant genes into active or repressive status. Polycomb Repressive Complex1 (PRC1) and PRC2, originally identified in Drosophila, are essential in initiating and/or maintaining genes in repressive status to mediate developmental phase transitions. Our review summarizes mechanisms in which the embryo-to-seedling transition, the juvenile-to-adult transition, and vegetative-to-reproductive transition in plants are mediated by PRC1 and PRC2, and suggests that PRC1 could act either before or after PRC2, or that they could function independently of each other. …


Too Much Of A Good Thing? A Governing Knowledge Commons Review Of Abundance In Context, Brett M. Frischmann, Michael J. Madison, Madelyn R. Sanfilippo, Katherine J. Strandburg Jul 2022

Too Much Of A Good Thing? A Governing Knowledge Commons Review Of Abundance In Context, Brett M. Frischmann, Michael J. Madison, Madelyn R. Sanfilippo, Katherine J. Strandburg

Faculty Publications

The economics of abundance, along with the sociology of abundance, the law of abundance, and so forth, should be re-framed, linked, and situated in a common context for empirical rather than conceptual research. Abundance may seem to be a new, big thing, between anxiety over information overload, Big Data, and related technological disruptions. But scholars know that abundance is an ancient phenomenon, which only seemed to disappear as twentieth century social science focused on scarcity instead. Restoring the study of abundance, and figuring out how to solve the problems that abundance might create, means shedding disciplinary blinders and going back …


Khsrp Loss Increases Neuronal Growth And Synaptic Transmission And Alters Memory Consolidation Through Rna Stabilization, Sarah L. Olguin, Priyanka Patel, Courtney N. Buchanan, Michela Dell'orco, Amy S. Gardiner, Robert Cole, Lauren S. Vaughn, Anitha Sundararajan, Joann Mudge, Andrea M. Allen, Pavel Ortinski, Jonathan L. Brigman, Jeffery L. Twiss, Nora L. Perrone-Bizzozero Jul 2022

Khsrp Loss Increases Neuronal Growth And Synaptic Transmission And Alters Memory Consolidation Through Rna Stabilization, Sarah L. Olguin, Priyanka Patel, Courtney N. Buchanan, Michela Dell'orco, Amy S. Gardiner, Robert Cole, Lauren S. Vaughn, Anitha Sundararajan, Joann Mudge, Andrea M. Allen, Pavel Ortinski, Jonathan L. Brigman, Jeffery L. Twiss, Nora L. Perrone-Bizzozero

Faculty Publications

KH-type splicing regulatory protein (KHSRP) regulates levels of several neuronal mRNAs linked to nervous system development and function.

The KH-type splicing regulatory protein (KHSRP) is an RNA-binding protein linked to decay of mRNAs with AU-rich elements. KHSRP was previously shown to destabilize Gap43 mRNA and decrease neurite growth in cultured embryonic neurons. Here, we have tested functions of KHSRP in vivo. We find upregulation of 1460 mRNAs in neocortex of adult Khsrp(-/-) mice, of which 527 bind to KHSRP with high specificity. These KHSRP targets are involved in pathways for neuronal morphology, axon guidance, neurotransmission and long-term memory. Khsrp(-/-) mice …


Pathways To Food Insecurity In The Context Of Conflict: The Case Of The Occupied Palestinian Territory, Tracy Kuo Lin, Rawan Kafri, Weeam Hammoudeh, Suzan Mitwalli, Zeina Jamaluddine, Hala Ghattas Ph.D., Rita Giacaman, Tiziana Leone Jul 2022

Pathways To Food Insecurity In The Context Of Conflict: The Case Of The Occupied Palestinian Territory, Tracy Kuo Lin, Rawan Kafri, Weeam Hammoudeh, Suzan Mitwalli, Zeina Jamaluddine, Hala Ghattas Ph.D., Rita Giacaman, Tiziana Leone

Faculty Publications

Background: Conflict reduces availability of production input and income, increases the number of days households had to rely on less preferred foods, and limits the variety of foods eaten and the portion size of meals consumed. While existing studies examine the impact of conflict on different food security measures (e.g., Food Consumption Score, Food Insecurity Experience Scale), the relationship between these measures as well as their relationship with political, economic, and agricultural factors remain under explored. Food insecurity may not only be an externality of conflict but also food deprivation may be utilized as a weapon to discourage residency in …


Circadiomics: Circadian Omic Web Portal, Muntaha Samad, Forest Agostinelli, Tomoki Sato, Kohei Shimaji, Pierre Baldi Jul 2022

Circadiomics: Circadian Omic Web Portal, Muntaha Samad, Forest Agostinelli, Tomoki Sato, Kohei Shimaji, Pierre Baldi

Faculty Publications

Circadian rhythms are a foundational aspect of biology. These rhythms are found at the molecular level in every cell of every living organism and they play a fundamental role in homeostasis and a variety of physiological processes. As a result, biomedical research of circadian rhythms continues to expand at a rapid pace. To support this research, CircadiOmics (http://circadiomics.igb.uci.edu/) is the largest annotated repository and analytic web server for high-throughput omic (e.g. transcriptomic, metabolomic, proteomic) circadian time series experimental data. CircadiOmics contains over 290 experiments and over 100 million individual measurements, across >20 unique tissues/organs, and 11 different species. Users are …


Leaf Development In Medicago Truncatula, Liren Du, Samuel Winright Adkins, Mingli Xu Jul 2022

Leaf Development In Medicago Truncatula, Liren Du, Samuel Winright Adkins, Mingli Xu

Faculty Publications

Forage yield is largely dependent on leaf development, during which the number of leaves, leaflets, leaf size, and shape are determined. In this mini-review, we briefly summarize recent studies of leaf development in Medicago truncatula, a model plant for legumes, with a focus on factors that could affect biomass of leaves. These include: floral development and related genes, lateral organ boundary genes, auxin biosynthesis, transportation and signaling genes, and WOX related genes.


Natural Products Inhibitors Of Monoamine Oxidases—Potential New Drug Leads For Neuroprotection, Neurological Disorders, And Neuroblastoma, Narayan D. Chaurasiya, Francisco León Ph.D., Ilias Muhammad, Babu L. Tekwani Jul 2022

Natural Products Inhibitors Of Monoamine Oxidases—Potential New Drug Leads For Neuroprotection, Neurological Disorders, And Neuroblastoma, Narayan D. Chaurasiya, Francisco León Ph.D., Ilias Muhammad, Babu L. Tekwani

Faculty Publications

Monoamine oxidase inhibitors (MAOIs) are an important class of drugs prescribed for treatment of depression and other neurological disorders. Evidence has suggested that patients with atypical depression preferentially respond to natural product MAOIs. This review presents a comprehensive survey of the natural products, predominantly from plant sources, as potential new MAOI drug leads. The psychoactive properties of several traditionally used plants and herbal formulations were attributed to their MAOI constituents. MAO inhibitory constituents may also be responsible for neuroprotective effects of natural products. Different classes of MAOIs were identified from the natural product sources with non-selective as well as selective …


A Wet/Dry Point Treatment Method Of Fvcom, Part Ii: Application To The Okatee/Colleton River In South Carolina, Changsheng Chen, Haosheng Huang, Huichan Lin, Jack Blanton, Chunyan Li, Francisco Andrade Jul 2022

A Wet/Dry Point Treatment Method Of Fvcom, Part Ii: Application To The Okatee/Colleton River In South Carolina, Changsheng Chen, Haosheng Huang, Huichan Lin, Jack Blanton, Chunyan Li, Francisco Andrade

Faculty Publications

The wet/dry point treatment method of FVCOM was applied to simulate the tide-induced flooding/drying process in the estuarine–tidal-creek–saltmarsh complex of the Okatee/Colleton River Estuary, South Carolina. The simulation results were compared with observed currents at three mooring sites and flooded areas observed from remote-sensing hypsometric measurements, demonstrating that FVCOM can robustly reproduce tidal and residual currents in the river and the flooding process onto the intertidal saltmarsh. The simulated flow field reveals that the Okatee/Colleton River Estuary is characterized by multiple residual eddies. Driven by the periodic tidal forcing, this estuarine system features a chaotic water transport process. Numerous residual …


Was The Decline Of Saltmarsh Tabanid Populations After The 2010 Oil Spill Associated With Change In The Larval Food Web?, Claudia Husseneder, Devika R. Bhalerao, Lane D. Foil Jul 2022

Was The Decline Of Saltmarsh Tabanid Populations After The 2010 Oil Spill Associated With Change In The Larval Food Web?, Claudia Husseneder, Devika R. Bhalerao, Lane D. Foil

Faculty Publications

Horse flies of the species Tabanus nigrovittatus and Tabanus acutus are native to coastal marshlands. Their larvae are apex invertebrate predators, and their development is dependent on the food web in the marsh sediment. Surveillance of T. nigrovittatus after the 2010 Deepwater Horizon Oil Spill in the Gulf of Mexico showed population crashes of adult flies in southeast Louisiana marshes near oil landfall, but not in southwest Louisiana where oil did not reach. Sediment collection in 2011 from Louisiana marshes showed a near-complete absence of larvae in the southeast yet high numbers in the southwest. We hypothesized that oil contamination …


Edwardsiella Ictaluri T3ss Effector Esen Modulates Expression Of Host Genes Involved In The Immune Response, Lidiya P. Dubytska, Ranjan Koirala, Azhia Sanchez, Ronald Thune Jul 2022

Edwardsiella Ictaluri T3ss Effector Esen Modulates Expression Of Host Genes Involved In The Immune Response, Lidiya P. Dubytska, Ranjan Koirala, Azhia Sanchez, Ronald Thune

Faculty Publications

The type III secretion system (T3SS) effector EseN is encoded on the Edwardsiella ictaluri chromosome and is homologous to a family of T3SS effector proteins with phosphothreonine lyase activity. Previously we demonstrated that E. ictaluri invasion activates extracellular signal-regulated kinases 1 and 2 (ERK1/2) early in the infection, which are subsequently inactivated by EseN. Com-parative transcriptomic analysis showed a total of 753 significant differentially expressed genes in head-kidney-derived macrophages (HKDM) infected with an EseN mutant (∆EseN) compared to HKDM infected with wild-type (WT) strains. This data strongly indicates classical activation of macrophages (the M1 phenotype) in response to E. ictaluri …


The Dual Nature Of The Nucleolus, Alan Tartakoff, Patrick Dimario, Eduard Hurt, Brian Mcstay, Vikram Govind Panse, David Tollervey Jul 2022

The Dual Nature Of The Nucleolus, Alan Tartakoff, Patrick Dimario, Eduard Hurt, Brian Mcstay, Vikram Govind Panse, David Tollervey

Faculty Publications

The nucleolus is best known for housing the highly ordered assembly line that produces ribosomal subunits. The >100 ribosome assembly factors in the nucleolus are thought to cycle between two states: an operative state (when integrated into subunit assembly intermediates) and a latent state (upon release from intermediates). Although it has become commonplace to refer to the nucleolus as “being a multilayered condensate,” and this may be accurate for latent factors, there is little reason to think that such assertions pertain to the operative state of assembly factors.


Mitochondrial Dna And Other Lines Of Evidence Clarify Species Diversity In The Peromyscus Truei Species Group (Cricetidae: Neotominae), Giovani Hernández-Canchola, Livia León-Paniagua, Jacob A. Esselstyn Jul 2022

Mitochondrial Dna And Other Lines Of Evidence Clarify Species Diversity In The Peromyscus Truei Species Group (Cricetidae: Neotominae), Giovani Hernández-Canchola, Livia León-Paniagua, Jacob A. Esselstyn

Faculty Publications

Deer mice (genus Peromyscus) are among the commonest small mammals in the Nearctic zoogeographic region. Nevertheless, systematic relationships are only partially settled and numerous taxonomic questions await resolution. For instance, researchers have found that some members of the Peromyscus truei species group contain high levels of genetic divergence that could indicate the presence of cryptic species. We analyzed the systematics and phylogenetic relationships of the P. truei group using new and previously published mitochondrial cytochrome b sequences. Our analyses verify several earlier conclusions, but we also detected new clades that deserve recognition. Considering their mitochondrial distinctiveness, allopatric ranges, and previously …


Planetary-Scale Change To The Biosphere Signalled By Global Species Translocations Can Be Used To Identify The Anthropocene, Mark Williams, Reinhold Leinfelder, Anthony D. Barnosky, Martin J. Head, Francine M.G. Mccarthy, Alejandro Cearreta, Stephen Himson, Rachael Holmes, Colin N. Waters, Jan Zalasiewicz, Simon Turner, Mary Mcgann, Elizabeth A. Hadly, M. Allison Stegner, Paul Michael Pilkington, Jérôme Kaiser, Juan Carlos Berrio, Ian P. Wilkinson, Jens Zinke, Kristine L. Delong Jul 2022

Planetary-Scale Change To The Biosphere Signalled By Global Species Translocations Can Be Used To Identify The Anthropocene, Mark Williams, Reinhold Leinfelder, Anthony D. Barnosky, Martin J. Head, Francine M.G. Mccarthy, Alejandro Cearreta, Stephen Himson, Rachael Holmes, Colin N. Waters, Jan Zalasiewicz, Simon Turner, Mary Mcgann, Elizabeth A. Hadly, M. Allison Stegner, Paul Michael Pilkington, Jérôme Kaiser, Juan Carlos Berrio, Ian P. Wilkinson, Jens Zinke, Kristine L. Delong

Faculty Publications

We examine three distinctive biostratigraphic signatures of humans associated with hunting and gathering, landscape domestication and globalization. All three signatures have significant fossil records of regional importance that can be correlated inter-regionally and help describe the developing pattern of human expansion and appropriation of resources. While none have individual first or last appearances that provide a globally isochronous marker, all three signatures overlap stratigraphically, in that they are part of a continuum of change, with complex regional patterns. Here we show that during the later stages of globalization, late nineteenth to twentieth century records of species translocations can be used …


Climate Change Compliance, Susan S. Kuo, Benjamin Means Jul 2022

Climate Change Compliance, Susan S. Kuo, Benjamin Means

Faculty Publications

Unless corporations prioritize climate change mitigation, efforts to control global warming will fail. Yet, the strategies that have been proposed for enlisting corporations are insufficient to the task. In our era of political polarization, a comprehensive “Green New Deal” to transition the U.S. economy away from fossil fuels is a nonstarter. Nor can we expect corporate risk management or social responsibility to fill the gap; there are practical limits to how far corporate managers can depart from strategies designed to maximize profits for investors.

This Article contends that climate change is a compliance issue. Scholars have overlooked compliance as a …


We Must Stop Fossil Fuel Emissions To Protect Permafrost Ecosystems, Benjamin W. Abbott, Michael Brown, Joanna C. Carey, Jessica G. Ernakovich, Jennifer M. Frederick, Laodong Guo, Gustaf Hugelius, Raymond M. Lee, Michael M. Loranty, Robie Macdonald, Paul J. Mann, Susan M. Natali, David Olefeldt, Pam Pearson, Abigail Rec, Martin Robards, Verity G. Salmon, Sara Sayedi, Christina Schadel, Edward A. G. Schuur, Sarah Shakil, Arial J. Shogren, Jens Strauss, Suzanne E. Tank, Brett F. Thornton, Rachael Treharne, Merritt Turetsky, Carolina Voigt, Nancy Wright, Yuanhe Yang, Jay P. Zarnetske, Qiwen Zhang, Scott Zolkos Jun 2022

We Must Stop Fossil Fuel Emissions To Protect Permafrost Ecosystems, Benjamin W. Abbott, Michael Brown, Joanna C. Carey, Jessica G. Ernakovich, Jennifer M. Frederick, Laodong Guo, Gustaf Hugelius, Raymond M. Lee, Michael M. Loranty, Robie Macdonald, Paul J. Mann, Susan M. Natali, David Olefeldt, Pam Pearson, Abigail Rec, Martin Robards, Verity G. Salmon, Sara Sayedi, Christina Schadel, Edward A. G. Schuur, Sarah Shakil, Arial J. Shogren, Jens Strauss, Suzanne E. Tank, Brett F. Thornton, Rachael Treharne, Merritt Turetsky, Carolina Voigt, Nancy Wright, Yuanhe Yang, Jay P. Zarnetske, Qiwen Zhang, Scott Zolkos

Faculty Publications

Climate change is an existential threat to the vast global permafrost domain. The diverse human cultures, ecological communities, and biogeochemical cycles of this tenth of the planet depend on the persistence of frozen conditions. The complexity, immensity, and remoteness of permafrost ecosystems make it difficult to grasp how quickly things are changing and what can be done about it. Here, we summarize terrestrial and marine changes in the permafrost domain with an eye toward global policy. While many questions remain, we know that continued fossil fuel burning is incompatible with the continued existence of the permafrost domain as we know …


Allure: A Multi-Modal Guided Environment For Helping Children Learn To Solve A Rubik's Cube With Automatic Solving And Interactive Explanations, Kausik Lakkaraju, Thahimum Hassan, Vedant Khandelwal, Prathamjeet Singh, Cassidy Bradley, Ronak Shah, Forest Agostinelli, Biplav Srivastava, Dezhi Wu Jun 2022

Allure: A Multi-Modal Guided Environment For Helping Children Learn To Solve A Rubik's Cube With Automatic Solving And Interactive Explanations, Kausik Lakkaraju, Thahimum Hassan, Vedant Khandelwal, Prathamjeet Singh, Cassidy Bradley, Ronak Shah, Forest Agostinelli, Biplav Srivastava, Dezhi Wu

Faculty Publications

Modern artificial intelligence (AI) methods have been used to solve problems that many humans struggle to solve. This opens up new opportunities for knowledge discovery and education. We demonstrate ALLURE, a collaborative educational AI system for learning to solve the Rubik's cube that is designed to help students improve their problem solving skills. ALLURE can both find its own strategies for solving the Rubik's cube and explain those strategies to humans. In the future, ALLURE will also be able to collaborate with humans by building on user-provided strategies for solving the Rubik's cube and as well as generalize to other …


Inhibitory Control Of Emotional Interference In Deaf Children: Evidence From Event-Related Potentials And Event-Related Spectral Perturbation Analysis, Qiong Chen, Junfeng Zhao, Huang Gu, Xiaoming Li Ph.D. Jun 2022

Inhibitory Control Of Emotional Interference In Deaf Children: Evidence From Event-Related Potentials And Event-Related Spectral Perturbation Analysis, Qiong Chen, Junfeng Zhao, Huang Gu, Xiaoming Li Ph.D.

Faculty Publications

Background: Impairment of interference control ability may reflect a more general deficit in executive functioning, and lead to an increase in internal-externalized problems such as impulsivity, which has been reported in deaf children. However, few researches have examined the neural mechanism of this impairment.

Methods: This study applied the electroencephalogram (EEG) technique to investigate the interference control ability in 31 deaf children and 28 hearing controls with emotional face-word stroop task.

Results: Results from behavioral task showed that deaf children exhibited lower accuracy compared to hearing controls. As for EEG analysis, reduced activation of ERP components in N1 and enhanced …


Supply Chain Resilience: How Autonomous Rovers Empirically Provide Relief To Constrained Flight Line Maintenance Activities, Mary A. Stanton, Jason Anderson, John M. Dickens, Lance Champagne Jun 2022

Supply Chain Resilience: How Autonomous Rovers Empirically Provide Relief To Constrained Flight Line Maintenance Activities, Mary A. Stanton, Jason Anderson, John M. Dickens, Lance Champagne

Faculty Publications

Purpose – The purpose of this research is to explore the utility of autonomous transport across two independent airframe maintenance operations at a single location. Design/methodology/approach – This study leveraged discrete event simulation that encompassed real-world conditions on a United States Air Force flight line. Though the Theory of Constraints (TOC) lens, a high-demand, human-controlled delivery asset is analyzed and the impact of introducing an autonomous rover delivery vehicle is assessed. The authors’ simulations explored varying numbers and networks of rovers as alternative sources of delivery and evaluated these resources’ impact against current flight line operations. Findings – This research …


Robust Network Stability Of Mosquitoes And Human Pathogens Of Medical Importance, Donald A. Yee, Catherine Dean Bermond, Limarie J. Reyes-Torres, Nicole S. Fijman, Nicole A. Scavo, Joseph Nelsen, Susan H. Yee Jun 2022

Robust Network Stability Of Mosquitoes And Human Pathogens Of Medical Importance, Donald A. Yee, Catherine Dean Bermond, Limarie J. Reyes-Torres, Nicole S. Fijman, Nicole A. Scavo, Joseph Nelsen, Susan H. Yee

Faculty Publications

Background: The exact number of mosquito species relevant to human health is unknown, posing challenges in understanding the scope and breadth of vector–pathogen relationships, and how resilient mosquito vector–pathogen networks are to targeted eradication of vectors.

Methods: We performed an extensive literature survey to determine the associations between mosquito species and their associated pathogens of human medical importance. For each vector–pathogen association, we then determined the strength of the associations (i.e., natural infection, lab infection, lab dissemination, lab transmission, known vector). A network analysis was used to identify relationships among all pathogens and vectors. Finally, we examined how …


Readymades & Repertoires: Artifact-Mediated Improvisation In Tabletop Role-Playing Games, Philip Tchernavskij, Andrew M. Webb, Hayden Gemeinhardt, Wendy E. Mackay Jun 2022

Readymades & Repertoires: Artifact-Mediated Improvisation In Tabletop Role-Playing Games, Philip Tchernavskij, Andrew M. Webb, Hayden Gemeinhardt, Wendy E. Mackay

Faculty Publications

Game masters (GMs) are creative practitioners who plan and orchestrate tabletop role-playing games. Through an interview study, we investigate how eight expert game masters adapt everyday technologies and materials as creativity support tools (CSTs) for improvisational and collaborative play. We integrate theories of improvisational and distributed creativity with the human-artifact model, which provides an activity-theoretical vocabulary for analyzing the mediating relationships between specialist practitioners and their tools. We show how GMs prepare and deploy readymade artifacts: analog and digital CSTs that flexibly mediate recurring creative tasks in their practice, such as improvising narrative elements, facilitating smooth play, and creating aesthetic …


Long Chain Fatty Acids And Virulence Repression In Intestinal Bacterial Pathogens, Mary K. Mitchell, Melissa Ellermann Jun 2022

Long Chain Fatty Acids And Virulence Repression In Intestinal Bacterial Pathogens, Mary K. Mitchell, Melissa Ellermann

Faculty Publications

When bacterial pathogens enter the gut, they encounter a complex milieu of signaling molecules and metabolites produced by host and microbial cells or derived from external sources such as the diet. This metabolomic landscape varies throughout the gut, thus establishing a biogeographical gradient of signals that may be sensed by pathogens and resident bacteria alike. Enteric bacterial pathogens have evolved elaborate mechanisms to appropriately regulate their virulence programs, which involves sensing and responding to many of these gut metabolites to facilitate successful gut colonization. Long chain fatty acids (LCFAs) represent major constituents of the gut metabolome that can impact bacterial …


Intraneuronal Β-Amyloid Accumulation: Aging Hiv-1 Human And Hiv-1 Transgenic Rat Brain, Hailong Li, Kristen A. Mclaurin, Charles F. Mactutus, Benjamin Linkins, Wenfei Huang, Sulie L. Chang, Rosemarie M. Booze Jun 2022

Intraneuronal Β-Amyloid Accumulation: Aging Hiv-1 Human And Hiv-1 Transgenic Rat Brain, Hailong Li, Kristen A. Mclaurin, Charles F. Mactutus, Benjamin Linkins, Wenfei Huang, Sulie L. Chang, Rosemarie M. Booze

Faculty Publications

The prevalence of HIV-1 associated neurocognitive disorders (HAND) is significantly greater in older, relative to younger, HIV-1 seropositive individuals; the neural pathogenesis of HAND in older HIV-1 seropositive individuals, however, remains elusive. To address this knowledge gap, abnormal protein aggregates (i.e., β-amyloid) were investigated in the brains of aging (>12 months of age) HIV-1 transgenic (Tg) rats. In aging HIV-1 Tg rats, double immunohistochemistry staining revealed abnormal intraneuronal β-amyloid accumulation in the prefrontal cortex (PFC) and hippocampus, relative to F344/N control rats. Notably, in HIV-1 Tg animals, increased β-amyloid accumulation occurred in the absence of any genotypic changes in …


Cis- And Trans-Resveratrol Have Opposite Effects On Histone Serine-Adp-Ribosylation And Tyrosine Induced Neurodegeneration, Megha Jhanji, Chintada Nageswara Rao, Jacob C. Massey, Marion C. Hope Iii, Xueyan Zhou, C. Dirk Keene, Tao Ma, Michael D. Wyatt, Jason A. Stewart, Sajish Mathew Jun 2022

Cis- And Trans-Resveratrol Have Opposite Effects On Histone Serine-Adp-Ribosylation And Tyrosine Induced Neurodegeneration, Megha Jhanji, Chintada Nageswara Rao, Jacob C. Massey, Marion C. Hope Iii, Xueyan Zhou, C. Dirk Keene, Tao Ma, Michael D. Wyatt, Jason A. Stewart, Sajish Mathew

Faculty Publications

Serum tyrosine levels increase during aging, neurocognitive, metabolic, and cardiovascular disorders. However, calorie restriction (CR) and sleep lower serum tyrosine levels. We previously showed that tyrosine inhibits tyrosyl-tRNA synthetase (TyrRS)-mediated activation of poly-ADP-ribose polymerase 1 (PARP1). Here, we show that histone serine-ADP-ribosylation is decreased in Alzheimer’s Disease (AD) brains, and increased tyrosine levels deplete TyrRS and cause neuronal DNA damage. However, dopamine and brain-derived neurotrophic factor (BDNF) increase TyrRS and histone serine-ADP-ribosylation. Furthermore, cis-resveratrol (cis-RSV) that binds to TyrRS mimicking a ‘tyrosine-free’ conformation increases TyrRS, facilitates histone serine-ADP-ribosylation-dependent DNA repair, and provides neuroprotection in a TyrRS-dependent manner. …


Intra-Axonal Translation Of Khsrp Mrna Slows Axon Regeneration By Destabilizing Localized Mrnas, Priyanka Patel, Courtney N. Buchanan, Matthew D. Zdradzinski, Pabitra K. Sahoo, Amar N. Kar, Seung Joon Lee, Lauren S. Vaughn, Anatoly Urisman, Juan Oses-Prieto, Michela Dell'orco, Devon E. Cassidy, Irene Dalla Costa, Sharmina Miller, Elizabeth Thames, Terika P. Smith, Alma L. Burlingame, Nora Perrone-Bizzozero, Jeffery L. Twiss Jun 2022

Intra-Axonal Translation Of Khsrp Mrna Slows Axon Regeneration By Destabilizing Localized Mrnas, Priyanka Patel, Courtney N. Buchanan, Matthew D. Zdradzinski, Pabitra K. Sahoo, Amar N. Kar, Seung Joon Lee, Lauren S. Vaughn, Anatoly Urisman, Juan Oses-Prieto, Michela Dell'orco, Devon E. Cassidy, Irene Dalla Costa, Sharmina Miller, Elizabeth Thames, Terika P. Smith, Alma L. Burlingame, Nora Perrone-Bizzozero, Jeffery L. Twiss

Faculty Publications

Axonally synthesized proteins support nerve regeneration through retrograde signaling and local growth mechanisms. RNA binding proteins (RBP) are needed for this and other aspects of post-transcriptional regulation of neuronal mRNAs, but only a limited number of axonal RBPs are known. We used targeted proteomics to profile RBPs in peripheral nerve axons. We detected 76 proteins with reported RNA binding activity in axoplasm, and levels of several change with axon injury and regeneration. RBPs with altered levels include KHSRP that decreases neurite outgrowth in developing CNS neurons. Axonal KHSRP levels rapidly increase after injury remaining elevated up to 28 days post …


Intraneuronal Β-Amyloid Accumulation: Aging Hiv-1 Human And Hiv-1 Transgenic Rat Brain, Hailong Li, Kristen A. Mclaurin, Charles F. Mactutus, Benjamin Linkins, Wenfei Huang, Sulie L. Chang, Rosemarie M. Booze Jun 2022

Intraneuronal Β-Amyloid Accumulation: Aging Hiv-1 Human And Hiv-1 Transgenic Rat Brain, Hailong Li, Kristen A. Mclaurin, Charles F. Mactutus, Benjamin Linkins, Wenfei Huang, Sulie L. Chang, Rosemarie M. Booze

Faculty Publications

The prevalence of HIV-1 associated neurocognitive disorders (HAND) is significantly greater in older, relative to younger, HIV-1 seropositive individuals; the neural pathogenesis of HAND in older HIV-1 seropositive individuals, however, remains elusive. To address this knowledge gap, abnormal protein aggregates (i.e., β-amyloid) were investigated in the brains of aging (>12 months of age) HIV-1 transgenic (Tg) rats. In aging HIV-1 Tg rats, double immunohistochemistry staining revealed abnormal intraneuronal β-amyloid accumulation in the prefrontal cortex (PFC) and hippocampus, relative to F344/N control rats. Notably, in HIV-1 Tg animals, increased β-amyloid accumulation occurred in the absence of any genotypic changes in …