Digital Commons Network^™

Commonwealth Times 2007-04-19

Commonwealth Times, 1969-

No abstract provided.

Commonwealth Times 2007-04-16

Commonwealth Times, 1969-

No abstract provided.

Commonwealth Times 2007-04-07

Commonwealth Times, 1969-

No abstract provided.

Commonwealth Times 2007-03-26

Commonwealth Times, 1969-

No abstract provided.

Commonwealth Times 2007-03-22

Commonwealth Times, 1969-

No abstract provided.

Commonwealth Times 2007-03-19

Commonwealth Times, 1969-

No abstract provided.

Interaction Of Glycolysis And Mitochondrial Respiration In Metabolic Oscillations Of Pancreatic Islets, Richard Bertram, Leslie S. Satin, Morten Gram Pedersen, Dan S. Luciani, Arthur Sherman

Pharmacology and Toxicology Publications

Abstract

Insulin secretion from pancreatic β-cells is oscillatory, with a typical period of 2–7 min, reflecting oscillations in membrane potential and the cytosolic Ca²⁺ concentration. Our central hypothesis is that the slow 2–7 min oscillations are due to glycolytic oscillations, whereas faster oscillations that are superimposed are due to Ca²⁺ feedback onto metabolism or ion channels. We extend a previous mathematical model based on this hypothesis to include a more detailed description of mitochondrial metabolism. We demonstrate that this model can account for typical oscillatory patterns of membrane potential and Ca²⁺ concentration in islets. It also …

Energetics Of The Protein-Dna-Water Interaction, Francesca Spyrakis, Pietro Cozzini, Chiara Bertoli, Anna Marabotti, Glen E. Kellogg, Andrea Mozzarelli

Medicinal Chemistry Publications

Background To understand the energetics of the interaction between protein and DNA we analyzed 39 crystallographically characterized complexes with the HINT (Hydropathic INTeractions) computational model. HINT is an empirical free energy force field based on solvent partitioning of small molecules between water and 1-octanol. Our previous studies on protein-ligand complexes demonstrated that free energy predictions were significantly improved by taking into account the energetic contribution of water molecules that form at least one hydrogen bond with each interacting species.

Results An initial correlation between the calculated HINT scores and the experimentally determined binding free energies in the protein-DNA system exhibited …

Electrospun Nitrocellulose And Nylon: Design And Fabrication Of Novel High Performance Platforms For Protein Blotting Applications, Ashley E. Manis, James R. Bowman, Gary L. Bowlin, David G. Simpson

Anatomy and Neurobiology Publications

Background

Electrospinning is a non-mechanical processing strategy that can be used to process a variety of native and synthetic polymers into highly porous materials composed of nano-scale to micron-scale diameter fibers. By nature, electrospun materials exhibit an extensive surface area and highly interconnected pore spaces. In this study we adopted a biological engineering approach to ask how the specific unique advantages of the electrospinning process might be exploited to produce a new class of research/diagnostic tools.

Methods

The electrospinning properties of nitrocellulose, charged nylon and blends of these materials are characterized.

Results

Nitrocellulose electrospun from a starting concentration of < 110 mg/ml acetone deposited as 4–8 μm diameter beads; at 110 mg/ml-to-140 mg/ml starting concentrations, this polymer deposited as 100–4000 nm diameter fibers. Nylon formed fibers when electrospun from 60–140 mg/ml HFIP, fibers ranged from 120 nm-6000 nm in diameter. Electrospun nitrocellulose exhibited superior protein retention and increased sensitivity in slot blot experiments with respect to the parent nitrocellulose material. Western immunoblot experiments using fibronectin as a model protein demonstrated that electrospun nylon exhibits increased protein binding and increased dynamic range in the chemiluminescence detection of antigens than sheets of the parent starting material. Composites of electrospun nitrocellulose and electrospun nylon exhibit high protein binding activity and provide increased sensitivity for the immuno-detection of antigens.

Conclusion …

---

Go to article

The Venom Gland Transcriptome Of The Desert Massasauga Rattlesnake (Sistrurus Catenatus Edwardsii): Towards An Understanding Of Venom Composition Among Advanced Snakes (Superfamily Colubroidea), Susanta Pahari, Stephen P. Mackessy, R. Manjunatha Kini

Biochemistry and Molecular Biology Publications

Background

Snake venoms are complex mixtures of pharmacologically active proteins and peptides which belong to a small number of superfamilies. Global cataloguing of the venom transcriptome facilitates the identification of new families of toxins as well as helps in understanding the evolution of venom proteomes.

Results

We have constructed a cDNA library of the venom gland of a threatened rattlesnake (a pitviper),Sistrurus catenatus edwardsii (Desert Massasauga), and sequenced 576 ESTs. Our results demonstrate a high abundance of serine proteinase and metalloproteinase transcripts, indicating that the disruption of hemostasis is a principle mechanism of action of the venom. In addition …

Biophysical Characterization Of Anticoagulant Hemextin Ab Complex From The Venom Of Snake Hemachatus Haemachatus, Yajnavalka Banerjee, Rajamani Lakshminarayanan, Subramanian Vivekanandan, Ganesh Srinivasan Anand, Suresh Valiyaveettil, R. Manjunatha Kini

Biochemistry and Molecular Biology Publications

Abstract

Hemextin AB complex from the venom of Hemachatus haemachatus is the first known natural anticoagulant that specifically inhibits the enzymatic activity of blood coagulation factor VIIa in the absence of factor Xa. It is also the only known heterotetrameric complex of two three-finger toxins. Individually only hemextin A has mild anticoagulant activity, whereas hemextin B is inactive. However, hemextin B synergistically enhances the anticoagulant activity of hemextin A and their complex exhibits potent anticoagulant activity. In this study we characterized the nature of molecular interactions leading to the complex formation. Circular dichroism studies indicate the stabilization of β-sheet …

Early Connections Between Film And Emerging Media As Evidenced In The Animated Worlds Of Adam Beckett, Pamela Turner

Kinetic Imaging Publications and Presentations

Making a “film” today rarely involves a journey to the lab as images are more often recorded digitally and not on celluloid. Even video’s electromagnetic record is transformed to bits and bytes. There is no frame to splice. The visual material exists as a virtual reference only. As McLuhan points out, new media doesn’t replace the old, existing media, but changes it. Theorists often point to the photograph and its impact on the painting. A similar event was the emergence of video technology and its ensuing relationship with film, a relationship whose differences have become increasingly transparent.

Looking at the …

Eltrombopag For Thrombocytopenia In Patients With Cirrhosis Associated With Hepatitis C, John G. Mchutchison, Geoffrey Dusheiko, Mitchell L. Shiffman, Maribel Rodriguez-Torres, Samuel Sigal, Marc Bourliere, Thomas Berg, Stuart C. Gordon, Fiona M. Campbell, Dickens Theodore, Nicole Blackman, Julian Jenkins, Nezam H. Afdhal

VCU Health Publications

Background

Eltrombopag is a new, orally active thrombopoietin-receptor agonist that stimulates thrombopoiesis. We evaluated its ability to increase platelet counts and facilitate treatment for hepatitis C virus (HCV) infection in patients with thrombocytopenia associated with HCV-related cirrhosis.

Methods

Seventy-four patients with HCV-related cirrhosis and platelet counts of 20,000 to less than 70,000 per cubic millimeter were randomly assigned to receive eltrombopag (30, 50, or 75 mg daily) or placebo daily for 4 weeks. The primary end point was a platelet count of 100,000 per cubic millimeter or more at week 4. Peginterferon and ribavirin could then be initiated, with continuation …

Virginia Commonwealth University Graduate And Professional Programs Bulletin [2007], Virginia Commonwealth University

VCU Bulletins

Graduate and professional programs bulletin for Virginia Commonwealth University for the academic year 2007-2008. It includes information on academic regulations, degree requirements, course offerings, faculty, academic calendar, and tuition and expenses for graduate programs.

Inpreppi: An Integrated Evaluation Method Based On Genomic Context For Predicting Protein-Protein Interactions In Prokaryotic Genomes, Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao

Psychiatry Publications

Background Although many genomic features have been used in the prediction of protein-protein interactions (PPIs), frequently only one is used in a computational method. After realizing the limited power in the prediction using only one genomic feature, investigators are now moving toward integration. So far, there have been few integration studies for PPI prediction; one failed to yield appreciable improvement of prediction and the others did not conduct performance comparison. It remains unclear whether an integration of multiple genomic features can improve the PPI prediction and, if it can, how to integrate these features.

Results In this study, we first …

Investigations On The Structure Of Dimethyl Sulfoxide And Acetone In Aqueous Solution, Sylvia E. Mclain, Alan K. Soper, Alenka Luzar

Chemistry Publications

Aqueous solutions of dimethyl sulfoxide (DMSO) and acetone have been investigated using neutron diffraction augmented with isotopic substitution and empirical potential structure refinement computer simulations. Each solute has been measured at two concentrations—1:20 and 1:2 solute:water mole ratios. At both concentrations for each solute, the tetrahedral hydrogen bonding network of water is largely unperturbed, though the total water molecule coordination number is reduced in the higher 1:2 concentrations. With higher concentrations of acetone, water tends to segregate into clusters, while in higher concentrations of DMSO the present study reconfirms that the structure of the liquid is dominated by DMSO-water interactions. …

Virginia Commonwealth University Undergraduate Bulletin Courses [2007], Virginia Commonwealth University

VCU Bulletins

Listing of undergraduate courses for 2007-2008.

Virginia Commonwealth University Undergraduate Bulletin [2007], Virginia Commonwealth University

VCU Bulletins

Undergraduate bulletin for Virginia Commonwealth University for the academic year 2007-2008. It includes information on academic regulations, degree requirements, course offerings, faculty, academic calendar, and tuition and expenses for undergraduate programs.

Virginia Commonwealth University Graduate And Professional Programs Bulletin Courses [2007], Virginia Commonwealth University

VCU Bulletins

Listing of professional and graduate courses for 2007-2008.

Menorah Review (No. 66, Winter/Spring, 2007)

Menorah Review

A Collection by MR's Poet Laureate -- Examining Historiography -- Revisiting Jewish Radicalism -- The World of Rabbi Nathan -- Why a Dictionary of Antisemitism

Stream Ambient Noise, Spectrum And Propagation Of Sounds In The Goby Padogobius Martensii: Sound Pressure And Particle Velocity, Marco Lugli, Michael L. Fine

Biology Publications

The most sensitive hearing and peak frequencies of courtship calls of the stream goby, Padogobius martensii, fall within a quiet window at around 100Hz in the ambient noise spectrum. Acoustic pressure was previously measured although Padogobius likely responds to particle motion. In this study a combination pressure (p) and particle velocity (u) detector was utilized to describe ambient noise of the habitat, the characteristics of the goby’s sounds and their attenuation with distance. The ambient noise (AN) spectrum is generally similar for p and u (including the quiet window at noisy locations), although the energy distribution of uspectrum is …

The Legacy Of Harvest And Fire On Ecosystem Carbon Storage In A North Temperate Forest, Christopher M. Gough

Biology Publications

Forest harvesting and wildfire were widespread in the upper Great Lakes region of North America during the early 20th century. We examined how long this legacy of disturbance constrains forest carbon (C) storage rates by quantifying C pools and fluxes after harvest and fire in a mixed deciduous forest chronosequence in northern lower Michigan, USA. Study plots ranged in age from 6 to 68 yrs and were created following experimental clear-cut harvesting and fire disturbance. Annual C storage was estimated biometrically from measurements of wood, leaf, fine root, and woody debris mass, mass losses to herbivory, soil carbon content, and …

Expression Pattern Of Three-Finger Toxin And Phospholipase A2 Genes In The Venom Glands Of Two Sea Snakes, Lapemis Curtus And Acalyptophis Peronii: Comparison Of Evolution Of These Toxins In Land Snakes, Sea Kraits And Sea Snakes, Susanta Pahari, David Bickford, Bryan G. Fry, R. Manjunatha Kini

Biochemistry and Molecular Biology Publications

Background

Snake venom composition varies widely both among closely related species and within the same species, based on ecological variables. In terrestrial snakes, such variation has been proposed to be due to snakes' diet. Land snakes target various prey species including insects (arthropods), lizards (reptiles), frogs and toads (amphibians), birds (aves), and rodents (mammals), whereas sea snakes target a single vertebrate class (fishes) and often specialize on specific types of fish. It is therefore interesting to examine the evolution of toxins in sea snake venoms compared to that of land snakes.

Results

Here we describe the expression of toxin genes …

Virginia Commonwealth University Commencement Program [2007], Virginia Commonwealth University

VCU Commencement Programs

No abstract provided.

Virginia Commonwealth University Fall Commencement Program [2007], Virginia Commonwealth University

VCU Commencement Programs

No abstract provided.

An Ab Initio Investigation On The Endohedral Metallofullerene Gd 3 N – C 80, M. C. Qian, S. N. Khanna

Physics Publications

First-principles electronic structure studies on the ground state geometry and electronic and magnetic properties of bare and hydrogen coated metallofullerene Gd3N–C80 have been carried out within a density functional formalism. The correlation effects are incorporated either through a generalized gradient corrected functional or through an on-site Coulomb interaction (LDA+U). It is shown that the bare Gd3N–C80 possess a ferromagnetic ground state with a large spin moment of 21μB that is highly stable against spin fluctuations. The simulated Raman spectrum shows that the low-energy peaks are contributed by the floppy movement of N atom. As to the effect of addition of …

Linkage Analysis Of A Model Quantitative Trait In Humans: Finger Ridge Count Shows Significant Multivariate Linkage To 5q14.1, Sarah E. Medland, Danuta Z. Loesch, Bogdan Mdzewski, Gu Zhu, Grant W. Montgomery, Nicholas G. Martin

Psychiatry Publications

The finger ridge count (a measure of pattern size) is one of the most heritable complex traits studied in humans and has been considered a model human polygenic trait in quantitative genetic analysis. Here, we report the results of the first genome-wide linkage scan for finger ridge count in a sample of 2,114 offspring from 922 nuclear families. Both univariate linkage to the absolute ridge count (a sum of all the ridge counts on all ten fingers), and multivariate linkage analyses of the counts on individual fingers, were conducted. The multivariate analyses yielded significant linkage to 5q14.1 (Logarithm of odds …

Possible Use Of Repeated Cold Stress For Reducing Fatigue In Chronic Fatigue Syndrome: A Hypothesis, Nikolai A. Shevchuk

Radiation Oncology Publications

Background Physiological fatigue can be defined as a reduction in the force output and/or energy-generating capacity of skeletal muscle after exertion, which may manifest itself as an inability to continue exercise or usual activities at the same intensity. A typical example of a fatigue-related disorder is chronic fatigue syndrome (CFS), a disabling condition of unknown etiology and with uncertain therapeutic options. Recent advances in elucidating pathophysiology of this disorder revealed hypofunction of the hypothalamic-pituitary-adrenal axis and that fatigue in CFS patients appears to be associated with reduced motor neurotransmission in the central nervous system (CNS) and to a smaller extent …

An Electrospray-Based, Ozone-Free Air Purification Technology, Gary Tepper, Royal Kessick, Dmitry Pestov

Mechanical and Nuclear Engineering Publications

A zero-pressure-drop, ozone-free air purification technology is reported. Contaminated air was directed into a chamber containing an array of electrospray wick sources. The electrospray sources produce an aerosol of tiny, electrically charged aqueous droplets.Charge was transferred from the droplets onto polar and polarizable species in the contaminated air stream and the chargedcontaminants were extracted using an electric field and deposited onto a metal surface. Purified air emerged from the other end of the chamber. The very small aqueous electrospray droplets completely evaporate so that the process is essentially dry and no liquid solvent is collected or recirculated. The air purification …

Size Dependent Magnetic Properties And Cation Inversion In Chemically Synthesized Mnfe2o4 Nanoparticles, C. N. Chinnasamy, Aria Yang, S. D. Yoon, Kailin Hsu, M. D. Shultz, E. E. Carpenter, S. Mukerjee, C. Vittoria, V. G. Harris

Chemistry Publications

MnFe2O4nanoparticles with diameters ranging from about 4to50nm were synthesized using a modified coprecipitation method. X-ray diffractograms revealed a pure phase spinel ferrite structure for all samples. Transmission electron microscopy showed that the particles consist of a mixture of both spherical (smaller) and cubic (larger) particles dictated by the reaction kinetics. The Néel temperatures (TN) of MnFe2O4 for various particle sizes were determined by using high temperature magnetometry. The ∼4nm MnFe2O4 particles showed a TN of about 320°C whereas the ∼50nm particles had a TN of about 400°C. The high Néel temperature, compared with the bulk MnFe2O4 TN of 300°C, is …