Digital Commons Network^™

Applied Industrial Augmented Reality, Eric Brown, Riley Hanson, Casey White

Capstone Design Expo Posters

The goal of our project was to create an application that demonstrates the usefulness of augmented reality within an industrial context. In order to align our project goals with those of our sponsor, Newport News Shipbuilding, we created an augmented reality application to supplement a chainsaw’s instruction manual. Using an instruction manual for a Stihl MS361 chainsaw, we adapted the material into a digital context. In the application, we included step-by-step instructions for starting the chainsaw and changing the chain. In addition, we included an augmented part identification mode, where the user can identify parts of the chainsaw by touching …

The Potential Role Of Aerobic Exercise-Induced Pentraxin 3 On Obesity-Related Inflammation And Metabolic Dysregulation, Aaron L. Slusher, Chun-Jung Huang, Edmund O. Acevedo

Kinesiology and Health Sciences Publications

Obesity is defined as the excess accumulation of intra-abdominal body fat, resulting in a state of chronic, low-grade proinflammation that can directly contribute to the development of insulin resistance. Pentraxin 3 (PTX3) is an acute-phase protein that is expressed by a variety of tissue and cell sources and provides an anti-inflammatory property to downregulate the production of proinflammatory cytokines, in particular interleukin-1 beta and tumor necrosis factor alpha. Although PTX3 may therapeutically aid in altering the proinflammatory milieu in obese individuals, and despite elevated expression of PTX3 mRNA observed in adipose tissue, the circulating level of PTX3 is reduced with …

Offspring Sex Ratio In Double Brooding Prothonotary Warblers, Radleigh Herschel, Anthony G. Kouri, Rebecca Vareed, Stephanie Warshawsky, Matthew Desaix

Rice Rivers Center Research Symposium

Prothonotary warblers are bright, golden birds who, with their loud calls, make themselves known in wetland habitats in the spring after returning from their winter homes in the Neotropics to breed. This migratory species is important to study because of their need for these habitats and are declining in population due to the degradation of wetland environments across the western hemisphere.

VCU started a project in 1987 to study prothonotary warblers including population genetics, breeding biology, and migration ecology. Since then, with the help of Richmond Audubon Society, the project has erected over 600 nesting boxes along the James River …

Projecting Habitat Of The Nonbreeding Prothonotary Warbler (Protonotaria Citrea) Under Various Climate Scenarios, Hannah Byrne, Lindsey Flanary, Ernesto Gagarin, Jessica A. Reese, Catherine B. Viverette

Rice Rivers Center Research Symposium

Understanding a species’ range, and how it may change over time, allows researchers to develop more robust species management plans and to identify vital habitat for conservation planning. For migratory bird species, different habitats are utilized during different times of year. While a neotropical migratory species’ breeding grounds may be adequate, its wintering ground or various stopover areas may be under threat. In what is known as a carry over effect, the degradation of wintering grounds can lead to poor quality individuals in the breeding range (Rockwell et al., 2012), thus reduced fitness.

The tropics are predicted to experience changes …

Safety And Effectiveness Of Propranolol In Severely Burned Patients: Systematic Review And Meta-Analysis, Ramiro Manzano-Nunez, Herney Andrés García-Perdomo, Paula Ferrada, Carlos Alberto Ordoñez Delgado, Diego Andrés Gomez, Jorge Esteban Foianini

Surgery Publications

Background

The objective of this systematic review was to determine the effectiveness and safety of propranolol compared to placebo or usual care for improving clinical relevant outcomes in severely burned patients (TBSA >20%).

Methods

Relevant articles from randomized controlled trials were identified by a literature search in MEDLINE, EMBASE, and CENTRAL. We included trials involving patients with a severe burn (>20% of total body surface area affected). Trials were eligible if they evaluated propranolol and compared to usual care or placebo. Two investigators independently assessed articles for inclusion and exclusion criteria and selected studies for the final analysis. We …

Development And Validation Of Clinical Whole-Exome And Whole-Genome Sequencing For Detection Of Germline Variants In Inherited Disease, Madhuri Hegde, Avni Santani, Rong Mao, Andrea Ferreira-Gonzalez, Karen E. Weck, Karl V. Voelkerding

Pathology Publications

Context.-With the decrease in the cost of sequencing, the clinical testing paradigm has shifted from single gene to gene panel and now whole-exome and whole-genome sequencing. Clinical laboratories are rapidly implementing next-generation sequencing-based whole-exome and whole-genome sequencing. Because a large number of targets are covered by whole-exome and whole-genome sequencing, it is critical that a laboratory perform appropriate validation studies, develop a quality assurance and quality control program, and participate in proficiency testing.

Objective.-To provide recommendations for wholeexome and whole-genome sequencing assay design, validation, and implementation for the detection of germline variants associated in inherited disorders.

Data Sources.-An example of …

Crosstalk And The Dynamical Modularity Of Feed-Forward Loops In Transcriptional Regulatory Networks, Michael A. Rowland, Ahmed Abdelzaher, Preetam Ghosh, Michael L. Mayo

Computer Science Publications

Network motifs, such as the feed-forward loop (FFL), introduce a range of complex behaviors to transcriptional regulatory networks, yet such properties are typically determined from their isolated study. We characterize the effects of crosstalk on FFL dynamics by modeling the cross regulation between two different FFLs and evaluate the extent to which these patterns occur in vivo. Analytical modeling suggests that crosstalk should overwhelmingly affect individual protein-expression dynamics. Counter to this expectation we find that entire FFLs are more likely than expected to resist the effects of crosstalk (approximate to 20% for one crosstalk interaction) and remain dynamically modular. The …

Bacterial Protein Meta-Interactomes Predict Cross-Species Interactions And Protein Function, J. Harry Caufield, Christopher Wimble, Semarjit Shary, Stefan Wuchty, Peter Uetz

Study of Biological Complexity Publications

Background

Protein-protein interactions (PPIs) can offer compelling evidence for protein function, especially when viewed in the context of proteome-wide interactomes. Bacteria have been popular subjects of interactome studies: more than six different bacterial species have been the subjects of comprehensive interactome studies while several more have had substantial segments of their proteomes screened for interactions. The protein interactomes of several bacterial species have been completed, including several from prominent human pathogens. The availability of interactome data has brought challenges, as these large data sets are difficult to compare across species, limiting their usefulness for broad studies of microbial genetics and …

Contemporary Approaches To Teaching American Indian Art, Melanie L. Buffington

The Melanie Buffington Papers

"In thinking through ways to teach about the art of Native Americans in more contemporary and culturally sensitive ways, focusing on contemporary art of American Indians, while referencing the past, is one approach that I believe may help work against essentialism. In particular, the art of two contemporary artists-Hock E Aye Vi also known as Edgar Heap of Birds and Teri Greeves-offers many possibilit ies for teachers." (p. 178)

Acute Neuroinflammation Induces Ais Structural Plasticity In A Nox2-Dependent Manner, S. D. Benusa, N. M. George, B. A. Sword, G. H. Devries, J. L. Dupree

Anatomy and Neurobiology Publications

Background

Chronic microglia-mediated inflammation and oxidative stress are well-characterized underlying factors in neurodegenerative disease, whereby reactive inflammatory microglia enhance ROS production and impact neuronal integrity. Recently, it has been shown that during chronic inflammation, neuronal integrity is compromised through targeted disruption of the axon initial segment (AIS), the axonal domain critical for action potential initiation. AIS disruption was associated with contact by reactive inflammatory microglia which wrap around the AIS, increasing association with disease progression. While it is clear that chronic microglial inflammation and enhanced ROS production impact neuronal integrity, little is known about how acute microglial inflammation influences AIS …

Medical Gross Anatomy For Large Classes In A 'Flipped' Classroom, M. Alex Meredith

Health Sciences Education Symposium

Medical gross anatomy is under pressures from curriculum change, advances in technology and class size. Our innovations involve a fundamental change in student involvement. Students are now engaged with self-instruction of introductory material via custom-made videos; active group dissections with integrated clinical correlations; functional/clinical didactic material and self-assessment quizzes. Also, a longitudinal, self-directed group exercise (called “Cadaver Rounds”) utilizes their cadaver as their “first patient” involves dissection, CT scans, Path samples and physical exams to present a final report of a plausible clinical condition their cadaver experienced. Ultimately, these changes “flipped” the classroom for Medical gross anatomy.

Abuse And Neglect Of Animals And People, An Update, Edward F. Ansello

Director's Editorials from Age in Action

Veterinarians have noticed for quite some time that individuals who mistreat their animals may not stop there, carrying over their behavior to spouses, parents and others. Research articles and “overview” publications have increased in number, as have advocacy groups and just the beginnings of connections between domestic violence and animal rights groups.

Remote Aerial Mapping Spectrometer, Kenny Parker, José Ramirez, Chris Lillard, Quan Ma

Capstone Design Expo Posters

According to the EPA, harmful algal blooms may occur more frequently in coastal areas like the Chesapeake Bay due to warming waters and increased nutrient pollution. Algal blooms cause aquatic dead zones which damage the ecosystem and can produce toxins which are dangerous to animals and humans. Continual environmental monitoring is required to research algal blooms and to prevent harm to residents and industries.

We researched technologies to locate harmful algal blooms and found spectroscopic remote surveying an effective approach. A material’s wavelength-dependent reflectance reveals its material composition. Unfortunately, existing methods which can map spectral characteristics are lacking. Field researchers …

Slowly Cycling Rho Kinase-Dependent Actomyosin Cross-Bridge "Slippage" Explains Intrinsic High Compliance Of Detrusor Smooth Muscle, Christopher J. Neal, Jia B. Lin, Tanner Hurley, Amy S. Miner, John E. Speich, Adam P. Klausner, Paul H. Ratz

Biochemistry and Molecular Biology Publications

Biological soft tissues are viscoelastic because they display timeindependent pseudoelasticity and time-dependent viscosity. However, there is evidence that the bladder may also display plasticity, defined as an increase in strain that is unrecoverable unless work is done by the muscle. In the present study, an electronic lever was used to induce controlled changes in stress and strain to determine whether rabbit detrusor smooth muscle (rDSM) is best described as viscoelastic or viscoelastic plastic. Using sequential ramp loading and unloading cycles, stress-strain and stiffness-stress analyses revealed that rDSM displayed reversible viscoelasticity, and that the viscous component was responsible for establishing a …

Predictive Behavior Of A Computational Foot/Ankle Model Through Artificial Neural Networks, Ruchi D. Chande, Rosalyn Hobson Hargraves, Norma Ortiz-Robinson, Jennifer S. Wayne

Biomedical Engineering Publications

Computational models are useful tools to study the biomechanics of human joints. Their predictive performance is heavily dependent on bony anatomy and soft tissue properties. Imaging data provides anatomical requirements while approximate tissue properties are implemented from literature data, when available. We sought to improve the predictive capability of a computational foot/ankle model by optimizing its ligament stiffness inputs using feedforward and radial basis function neural networks. While the former demonstrated better performance than the latter per mean square error, both networks provided reasonable stiffness predictions for implementation into the computational model.

Aging Effects On Airflow Dynamics And Lung Function In Human Bronchioles, Jongwon Kim, Rebecca L. Heise, Angela M. Reynolds, Ramana M. Pidaparti

Biomedical Engineering Publications

Background and objective

The mortality rate for patients requiring mechanical ventilation is about 35% and this rate increases to about 53% for the elderly. In general, with increasing age, the dynamic lung function and respiratory mechanics are compromised, and several experiments are being conducted to estimate these changes and understand the underlying mechanisms to better treat elderly patients.

Materials and methods

Human tracheobronchial (G1 ~ G9), bronchioles (G10 ~ G22) and alveolar sacs (G23) geometric models were developed based on reported anatomical dimensions for a 50 and an 80-year-old subject. The aged model was developed by altering the geometry and …

Interleukin-18 Mediates Cardiac Dysfunction Induced By Western Diet Independent Of Obesity And Hyperglycemia In The Mouse, S Carbone, P J H Lee, A G Mauro, E Mezzaroma, R Buzzetti, B Van Tassell, A Abbate, S Toldo

Family Medicine and Population Health Publications

Obesity and diabetes are independent risk factors for heart failure and are associated with the consumption of diet rich in saturated fat and sugar, Western diet (WD), known to induce cardiac dysfunction in the mouse through incompletely characterized inflammatory mechanisms. We hypothesized that the detrimental cardiac effects of WD are mediated by interleukin-18 (IL-18), proinflammatory cytokine linked to cardiac dysfunction. C57BL/6J wild-type male mice and IL-18 knockout male mice were fed highsaturated fat and high-sugar diet for 8 weeks. We measured food intake, body weight and fasting glycemia. We assessed left ventricular (LV) systolic and diastolic function by Doppler echocardiography …

Identification Of Naegleria Fowleri Proteins Linked To Primary Amoebic Meningoencephalitis, Melissa Jamerson, Jacqueline A. Schmoyer, Jay Park, Francine Marciano-Cabral, Guy A. Cabral

Microbiology and Immunology Publications

Naegleria fowleri (N. fowleri) causes primary amoebic meningoencephalitis, a rapidly fatal disease of the central nervous system. N. fowleri can exist in cyst, flagellate or amoebic forms, depending on environmental conditions. The amoebic form can invade the brain following introduction into the nasal passages. When applied intranasally to a mouse model, cultured N. fowleri amoebae exhibit low virulence. However, upon serial passage in mouse brain, the amoebae acquire a highly virulent state. In the present study, a proteomics approach was applied to the identification of N. fowleri amoeba proteins whose expression was associated with the highly virulent state …

Saikosaponins Induced Hepatotoxicity In Mice Via Lipid Metabolism Dysregulation And Oxidative Stress: A Proteomic Study, Xiaoyu Li, Xiaojiaoyang Li, Junxian Lu, Youyi Huang, Lili Lv, Yongfu Luan, Runping Liu, Rong Sun

Microbiology and Immunology Publications

Background

Radix Bupleuri (RB) has been popularly used for treating many liver diseases such as chronic hepatic inflammation and viral Hepatitis in China. Increasing clinical and experimental evidence indicates the potential hepatotoxicity of RB or prescriptions containing RB. Recently, Saikosaponins (SS) have been identified as major bioactive compounds isolated from RB, which may be also responsible for RB-induced liver injury.

Methods

Serum AST, ALT and LDH levels were determined to evaluate SS-induced liver injury in mice. Serum and liver total triglyceride and cholesterol were used to indicate lipid metabolism homeostasis. Liver ROS, GSH, MDA and iNOS were used to examine …

The Anti-Sepsis Activity Of The Components Of Huanglian Jiedu Decoction With High Lipid A-Binding Affinity, Guirong Chen, Yubin Xu, Jing Jing, Brianna Mackie, Xinchuan Zheng, Xu Zhang, Jing Wang, Xuetao Li

Medicinal Chemistry Publications

Huanglian Jiedu Decoction (HJD), one of the classic recipes for relieving toxicity and fever, is a common method for treating sepsis in China. However, the effective components of HJD have not yet been identified. This experiment was carried out to elucidate the effective components of HJD against sepsis. Thus, seven fractions from HJD were tested using a biosensor to test their affinity for lipid A. The components obtained that had high lipid A-binding fractions were further separated, and their affinities to lipid A were assessed with the aid of a biosensor. The levels of LPS in the blood were measured, …

A Template Analysis Of Intimate Partner Violence Survivors’ Experiences Of Animal Maltreatment: Implications For Safety Planning And Intervention, Elizabeth A. Collins, Anna M. Cody, Shelby Elaine Mcdonald, Nicole Nicotera, Frank R. Ascione, James Herbert Williams

Social Work Publications

This study explores the intersection of intimate partner violence (IPV) and animal cruelty in an ethnically diverse sample of 103 pet-owning IPV survivors recruited from community-based domestic violence programs. Template analysis revealed five themes: (a) Animal Maltreatment by Partner as a Tactic of Coercive Power and Control, (b) Animal Maltreatment by Partner as Discipline or Punishment of Pet, (c) Animal Maltreatment by Children, (d) Emotional and Psychological Impact of Animal Maltreatment Exposure, and (e) Pets as an Obstacle to Effective Safety Planning. Results demonstrate the potential impact of animal maltreatment exposure on women and child IPV survivors’ health and safety.

Pattern Research Project: An Investigation Of The Pattern And Printing Process - Mughal Art, Ria John

Pattern Research Project

2017 Pattern Research Project

Ria John - Mughal Art

The Pattern Research Project involves research and analysis of contemporary patterns found in the textiles and wallcoverings of the built interior environment. Patterns use motif, repetition, color, geometry, craft, technology, and space to communicate place, time, and concept. Through this research and analysis, built environments - their designers, occupants, construction, and context - can be better understood.

Ria John, VCU Interior Design BFA 2020, selected the Mughal Art for the 2017 Pattern Research Project. The text below is excerpted from the student’s work:

“The pattern is a combination of lattice and …

A Preliminary Longitudinal Study Of White Matter Alteration In Cocaine Use Disorder Subjects, Liangsuo Ma, Joel L. Steinberg, Qin Wang, Joy M. Schmitz, Edward L. Boone, Ponnada A. Narayana, F. Gerard Moeller

Radiology Publications

Background

Previous diffusion tensor imaging (DTI) studies have consistently shown that subjects with cocaine use disorder (CocUD) had altered white matter microstructure in the corpus callosum. It is believed that these alterations are due to preexisting factors, chronic cocaine use, or both. However, there is no published longitudinal DTI study on human cocaine users yet which could shed light on the relationship between cocaine use and DTI findings.

Methods

This study used a longitudinal design and DTI to test if the white matter microstructure shows quicker alteration in CocUD subjects than controls. DTI data were acquired from eleven CocUD subjects …

Medical Literary Messenger (Vol. 5, No. 1, Fall/Winter 2017)

Medical Literary Messenger

Home Visit / Melissa Fournier -- Stiffness / Hannah Shea -- Exile / Lane Falcon -- Good Intentions / Laura Foley -- Resurrection / Les Cohen -- Visits / Craig W. Steele -- That Last Night / Laura Foley -- Taste / Dan Campion -- Bumblebees Don’t Always Sting / Diane M. Parker -- Mental Status Exam / Melissa Fournier -- Dystrophia I / Ashley Purdy -- Muck Out / Mitchell Krockmalnik Grabois -- Endoscope / Lane Falcon -- Leftovers / Erynn Porter -- Another Autumn / Deborah Fleming -- Autism / Laura Foley -- Nearly Sunset / Craig W. …

In Defense Of Science—What Would John Do?, Mohamed Gad-El-Hak

Mechanical and Nuclear Engineering Publications

Recent onslaughts on the importance of pure research to our collective well-being are trending. In this essay, I discuss the issues involved and offer a rebuttal. The thoughts are inspired by my mentor, academic sibling, and idol John Leask Lumley.

Predictive Behavior Of A Computational Foot/Ankle Model Through Artificial Neural Networks, Ruchi D. Chande, Rosalyn Hobson Hargraves, Norma Ortiz-Robinson, Jennifer S. Wayne

Biomedical Engineering Publications

Computational models are useful tools to study the biomechanics of human joints. Their predictive performance is heavily dependent on bony anatomy and soft tissue properties. Imaging data provides anatomical requirements while approximate tissue properties are implemented from literature data, when available. We sought to improve the predictive capability of a computational foot/ankle model by optimizing its ligament stiffness inputs using feedforward and radial basis function neural networks. While the former demonstrated better performance than the latter per mean square error, both networks provided reasonable stiffness predictions for implementation into the computational model.

Virginia Commonwealth University Courses [2017], Virginia Commonwealth University

VCU Bulletins

Listing of courses for the 2017-2018 year.

A Mathematical System For Human Implantable Wound Model Studies, Salomonsky Paul-Michael, Rebecca Segal

Mathematics and Applied Mathematics Publications

In this work, we present a mathematical model, which accounts for two fundamental processes involved in the repair of an acute dermal wound. These processes include the inflammatory response and fibroplasia. Our system describes each of these events through the time evolution of four primary species or variables. These include the density of initial damage, inflammatory cells, fibroblasts and deposition of new collagen matrix. Since it is difficult to populate the equations of our model with coefficients that have been empirically derived, we fit these constants by carrying out a large number of simulations until there is reasonable agreement between …

Variation In Growth And Developmental Responses To Supraoptimal Temperatures Near Latitudinal Range Limits Of Gypsy Moth Lymantria Dispar (L.), An Expanding Invasive Species, Lily M. Thompson, Trevor M. Faske, Nana Banahene, Dominique Grim, Salvatore J. Agosta, Dylan Parry, Patrick C. Tobin, Derek M. Johnson, Kristine L. Grayson

Biology Publications

Variation in thermal performance within and between populations provides the potential for adaptive responses to increasing temperatures associated with climate change. Organisms experiencing temperatures above their optimum on a thermal performance curve exhibit rapid declines in function and these supraoptimal temperatures can be a critical physiological component of range limits. The gypsy moth, Lymantria dispar (L.) (Lepidoptera: Erebidae), is one of the best-documented biological invasions and factors driving its spatial spread are of significant ecological and economic interest. The present study examines gypsy moth sourced from different latitudes across its North American range for sensitivity to high temperature in constant …

Low Cost, Adhesion Strength Based Cell Sorter, Emily Burtch, Franck Kamga-Gninzeko, Devin Mair, Sarah Saunders

Capstone Design Expo Posters

In many in vitro experiments, primary cells are harvested from an animal species to undergo experimental manipulation and subsequent analysis. Cell sorters are a luxury to have after cell harvesting to ensure pure populations of cells. Recently, it was discovered that different cell types adhere to cell culture dishes at different strengths. This observation was utilized in the invention of a cell sorting system that sorts cells based on this adhesion strength difference. The resulting system is marketable at under $2000, compared to $50000 plus for current commercially available systems, and is the first commercially-oriented cell adhesion strength based cell …