Digital Commons Network^™

Low Resource Assay For Tracking Sars-Cov-2 In Wastewater, Julissa Van Renselaar

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Wastewater based epidemiology (WBE) allows for the tracking of nucleic acid of SARS-CoV-2 in wastewater which gives the opportunity for the public and government officials to be informed about the infectivity of the virus in a community. Advances have been made in WBE that have allowed for higher performance, lower resource use, and faster turnaround time. An adapted concentration method of spin column direct extraction has yielded a proxy virus recovery of 83%, consumable cost of $2.01 per sample, and a turnaround time of 0.33 hour/sample. Other concentration methods have lower proxy virus recoveries, comparable cost, and comparable turnaround time. …

Power Approximations For Generalized Linear Mixed Models In R Using Steep Priors On Variance Components, Sydney Geisler

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

When designing an experiment, researchers often want to know how likely they are to detect statistically significant effects in the resulting data, i.e., they want to estimate their statistical power. The probability distribution method is a flexible way to do this, and it is currently implemented in the statistical software package SAS. This method requires a hypothetical data set (showing the magnitude of hypothesized effects) and constant values of variance components, which are critical elements of the statistical models used. The statistical software package R is increasingly popular, but the probability distribution method has not yet been implemented in R, …

Statistical Challenges And Methods For Missing And Imbalanced Data, Rose Adjei

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Missing data remains a prevalent issue in every area of research. The impact of missing data, if not carefully handled, can be detrimental to any statistical analysis. Some statistical challenges associated with missing data include, loss of information, reduced statistical power and non-generalizability of findings in a study. It is therefore crucial that researchers pay close and particular attention when dealing with missing data. This multi-paper dissertation provides insight into missing data across different fields of study and addresses some of the above mentioned challenges of missing data through simulation studies and application to real datasets. The first paper of …

Data Visualization, Dimensionality Reduction, And Data Alignment Via Manifold Learning, Andrés Felipe Duque Correa

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The high dimensionality of modern data introduces significant challenges in descriptive and exploratory data analysis. These challenges gave rise to extensive work on dimensionality reduction and manifold learning aiming to provide low dimensional representations that preserve or uncover intrinsic patterns and structures in the data. In this thesis, we expand the current literature in manifold learning developing two methods called DIG (Dynamical Information Geometry) and GRAE (Geometry Regularized Autoencoders). DIG is a method capable of finding low-dimensional representations of high-frequency multivariate time series data, especially suited for visualization. GRAE is a general framework which splices the well-established machinery from kernel …

Numerical Modeling And Simulating Thermal Performance Of Printed Circuit Boards, Paul R. Ziegenfelder

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This research investigates how heat transfer theory can be applied to evaluate the thermal performance of printed circuit board (PCB) designs. A model was developed for correlating theory to the physical parameters relating to the construction of the PCB and a computer application was developed to perform the thermal analysis. The application allows the importation of common PCB design files for a straightforward and quick analysis of a PCB design’s thermal performance. The application is open-source to allows for further development and free access from the public.

Rainfall Increases Alpha And Has No Effect On The Beta Diversity Of Animal-Dispersed Shrubs In Panama, Rosemary Hopson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Climate patterns affect where plants can grow and survive. In tropical areas, the main form of precipitation is rain, and rainfall has been demonstrated to influence tree species distributions. For this thesis, I examined the relationship between rainfall and the diversity of animal-dispersed tropical shrubs. To do this, I used data on shrub diversity collected in the summer of 2017. Plots were established across the Isthmus of Panama, from the drier Pacific side to the wetter Atlantic side, to survey animal-dispersed shrubs. I analyzed three metrics of diversity that weigh rare and common species differently. The first weighs rare species …

Bifurcations And Hysteresis In The Dynamics Of Small Populations Of Spherical Magnets, Peter T. Haugen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

If you heat up some kinds of metals and then cool them down next to a magnet, they will be a magnet when they cool, but if they cool down away from a magnet, they will just be a lump of metal. This is an example of hysteresis and it’s very important for lots of technology. Another example of hysteresis might be a water tower pump that turns on when the tower is nearly empty and keeps going until the tower is nearly full. Whether or not the pump is on when the tower is half full depends on what …

Bugs, Bullets And Birds: Factors Affecting The Health And Survival Of Ferruginous Hawk Nestlings In The Intermountain West, Ellis A. Juhlin

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Ferruginous Hawks are a bird of prey species that nest in sagebrush steppe and grassland habitat. These birds are threatened by habitat loss and fragmentation from urbanization, rural development, oil and natural gas extraction, habitat treatment projects, and wildfires, and experiencing widespread population declines across their breeding range. Because of this, Ferruginous Hawks (FEHAs) have been deemed a Species of Greatest Conservation Need by state management agencies in Utah, Idaho, Wyoming and Nevada. The health and survival of Ferruginous Hawk (FEHA) nestlings is crucial to long-term population viability. Understanding the threats these birds are facing as nestlings can provide valuable …

Temperature Dependent Density Of States Models And Compiled Data For Radiation Induced Conductivity, Jodie Gillespie

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Radiation Induced Conductivity (RIC) is the change in conductivity of a material due to bombardment from incident high energy radiation. RIC has consistently been found to follow a standard power law relation, 𝜎_𝑅𝐼𝐶(𝑇) = 𝑘_𝑅𝐼𝐶(𝑇)Ḋ^∆(𝑇), between conductivity, 𝜎_𝑅𝐼𝐶 and adsorbed dose rate, Ḋ. 𝑘_𝑅𝐼𝐶(𝑇) and ∆(𝑇) are material dependent parameters. Previous RIC models were developed in the 𝑇 → 0 limit. Now expanded models are developed in the low temperature limit (within a few 𝑘_𝐵𝑇 of the effective Fermi level) by approximating the Fermi-Dirac equation within a …

The Efficacy And Feasibility Of Web-Based Acceptance-Enhanced Behavioral Treatment For Trichotillomania In Adults: A Randomized Waitlist-Controlled Trial, Leila K. Capel

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Trichotillomania, or chronic hair pulling, impacts several aspects of a person’s everyday life and functioning including making it difficult to fully engage in school, work, romantic relationships, and other social relationships. There are several treatment options for trichotillomania and one that is particularly promising is acceptance and commitment therapy-enhanced behavioral therapy (AEBT). Several studies have been done in person and through telehealth and this treatment has helped participants.

Many people in the U.S. struggle with trichotillomania but many people are not able to access treatment for their hair pulling because clinicians are not available in their area, clinicians are not …

Pleistocene Deposits Of Lower Wahweap Creek And Its Tributaries, Southern Utah, Noah Slade

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The famous landscapes of the Colorado Plateau have been created over millions of years, primarily by erosive forces of wind and water. Interruptions in the long-term erosion of the landscape occur when streams gain more sediment than they can transport, which causes deposition along channels and floodplains. The resulting sequences of terrace deposits are used by geologists to study when and how river systems have evolved.

Mammoth bones were recently discovered in stream deposits along Wahweap Creek, a tributary of the Colorado River in southern Utah. Previous work indicates that the deposits pre-date the last ice age, making it one …

Effects Of Obesity On Knee Extensor Structure, Function, And Gait: A Systematic Review And Meta-Analysis, Michael N. Vakula

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Obesity is a common, costly, and critical disease that increases the risk of disability and premature death. Most commonly, obesity is caused by an increased consumption of energy dense foods and decreased time spent being physically active. The greater weight with obesity interrupts normal musculoskeletal function which can lead to physical adaptations such as decreased lower-extremity muscle strength and abnormal walking patterns, both of which are among top risk factors for falls in older individuals. However, the effects of obesity on walking and lower-extremity muscle strength have not previously been examined by incorporating the results of all existing studies in …

Storytelling To Promote Mental Health: A Conceptual Analysis And Application With Acceptance And Commitment Therapy For Depression, Carter H. Davis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Mental health treatments can be delivered in many ways. One approach is to use storytelling to communicate healthy practices. While societies across the world have engaged in storytelling for thousands of years, these practices have been used less in the mental health field. The aim of this project was to study the overlap between the areas of mental health and storytelling. We also tested how a storytelling-based mental health treatment could help solve a particular clinical problem. In this case, the problem of people who receive inadequate help for managing depression through medication alone.

We examined one particular mental health …

Together, Our Voices Will Strengthen The Weaving: Using Autoethnography And Narrative Inquiry To Indigenize Sense Of Belonging In Higher Education, Devon S. Isaacs

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Native American students in higher education are often asked to find a sense of belonging in places and spaces that do not reflect their cultures or worldviews. This can lead to isolation and a feeling of having to choose between themselves and their identities as Indigenous peoples. This contributes to poorer mental health, loss of well-being, and decreased academic success. The purpose of this study was to ask seven Native American participants how they defined sense of belonging from their own worldviews. Participants were also asked about spaces and places in higher education that helped or did not help them …

The Role Of Dysfunctional Beliefs And Attitudes About Sleep (Dbas), Rumination, Psychological Inflexibility, And Insomnia Among College Students, Guadalupe G. San Miguel

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The purpose of the study was to understand additional variables that play a role between insomnia and the inability to stay present with internal feelings/emotions (i.e., psychological inflexibility) among college students. These variables that were predicted to help explain this relationship include dysfunctional sleep-related cognitions and insomnia rumination. To do this, college students were surveyed online at the start of the study and one month later. In addition, to be included in the study they must have been enrolled in a 2- or 4-year university, have access to the internet, and not diagnosed with another sleep disorder. Participants (n …

Quantifying Floral Resource Availability Using Unmanned Aerial Systems And Machine Learning Classifications To Predict Bee Community Structure, Jesse Anjin Tabor

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bees are important for agricultural and non-agricultural ecosystems because they pollinate both wild plants and commercial crops. Flowers provide pollen and nectar resources that bees use to survive and reproduce. Measuring the relationship between the floral community and bee community may help apiarists and land managers to make informed decisions in managing wild and domesticated bee species. Manual methods to describe and count flowering vegetation is costly in time and personnel. Unmanned aerial vehicle (UAV) technology may be an efficient way to describe and count flowering vegetation on a large scale. UAVs with classification analysis and ground transect surveys were …

Investigations Of Prokaryotic Defense Systems, Hannah Domgaard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bacteria are constantly threatened with infection by mobile genetic elements (MGE) such as bacteriophage and plasmids. Bacteriophage and plasmids require the bacteria's cellular infrastructure to replicate their genomes. Rampant replication can lead to cell death which is one reason why bacteria have developed a diverse array of immune systems to prevent or limit infection. This thesis studies three types of bacterial immune systems, type IV-A CRISPR-Cas (Clustered Regularly Interspaced Short Palindromic Repeat –CRISPR associated), type V-A2 CRISPR-Cas systems, and Wadjet systems.

The type IV-A system lies adjacent to a dinG-like helicase gene. Research has shown that this system can target …

Event-Based Obstacle Detection With Commercial Lidar, Chaz Cornwall

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Computerized obstacle detection for moving vehicles is becoming more important as vehicle manufacturers make their systems more autonomous and safe. However, obstacle detection must operate quickly in dynamic environments such as driving at highway speeds. A unique obstacle detection system using 3D changes in the environment is proposed. Furthermore, these 3D changes are shown to contain sufficient information for avoiding obstacles. To make the system easy to integrate onto a vehicle, additional processing is implemented to remove unnecessary dependencies. This system provides a method for obstacle detection that breaks away from typical systems to be more efficient.

Extreme, Positive Geomorphic Change In A Historically Degraded Desert River: Implications For Imperiled Fishes, Tansy T. Remiszewski

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Rivers comprise some of the most unique and biodiverse ecosystems on the planet with their waters supporting both human societies as well as the organisms that make these rivers their home. Large rivers like the Colorado are often highly regulated and diverted in order to support human residence in arid regions like the desert Southwest, and these water diversions often have dramatic, negative impacts on the natural flow regime of the river. These impacts leave large reaches of the river dry, reduce the river’s capacity to transport sediment, cause channel and habitat homogenization, and significantly reduce the amount of suitable …

River Response To Sediment Supply: The Sand Bed Case, Christina M. Leonard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Effective management of in-channel and floodplain habitat requires an ability to forecast river response to changes in water and sediment supply. These changes may result from dam construction/decommissioning, changes in reservoir operations, or changes in grazing or forestry practices. If a change in water and sediment supply causes sediment to be delivered faster than the channel’s capacity to transport it, sediment will accumulate in the reach, leading to changes in channel form and increasing the potential for flooding. A decrease in sediment supply relative to transport capacity can lead to channel incision. The extent and timing of sediment accumulation or …

Seed Ecology And Regeneration Processes To Inform Seed-Based Wetland Restoration, Emily E. Tarsa

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Wetlands provide immense value to wildlife and humans but have been degrading rapidly around the world. One major challenge is the loss of native plant species in wetlands, which limits the ability of wetlands to function as they should. Restoring wetlands requires a combination of removing the cause of degradation (such as invasive plant species) and, in many cases, actively returning native plants to the site especially via seeding. Further, early plant life stages are the most vulnerable for plants and is often the time in which sown species die and fail to establish. Thus, understanding how and why seeds …

Modeling And Control Of Battery Management Systems With High-Frequency Ac Link Coupled Multiport Series Resonant Converters For 2nd Life Battery Applications, Brooks Jace Maughan

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

While the use and production of Electric Vehicles becomes more prevalent, it is also important to make this economical and ensure the reduction of a carbon footprint. Second-life batteries can satisfy both problems as batteries can be used in a second-life application for lower power purposes such as supplementing the grid so the infrastructure needed to charge the expanding fleet of Electric Vehicles can be easily supplied. This thesis goes through the process of Active Cell Balancing which will produce equal capacities, or similar batteries, that can be more efficiently used in these and other types of second-life applications. The …

Investigating Atmospheric Gravity Waves Using 3-Dimensional Spectral Analysis, Kenneth I. Zia

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Atmospheric gravity waves (GW) are generated from the ground and go into the upper layers of the atmosphere where space begins. These waves have strong effects on the temperature and circulation of the Earth’s atmosphere. The temperature changes caused by these waves are observed through special cameras looking at light that the Earth’s atmosphere naturally emit at night. One of these cameras is placed at McMurdo Station, Antarctica where the long nights are used to see these waves longer than anywhere else. The images captured there are automatically analyzed to determine wave properties to better understand how often they are …

Development Of In Situ Second-Order Nonlinear Optical Scatterings For Molecular Behaviors At Aerosol Surfaces, Yuqin Qian

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Aerosol particles are one of the most important components of the atmosphere. During the growth of aerosol particles, they directly or indirectly affect air quality, human health, and environmental chemistry. Therefore, understanding the chemical and physical properties of such particles is an important scientific, engineering, and medical issue. The growth of aerosol particles in the atmosphere is closely related to the chemical structure at its surface, as well as the heterogeneous reactions which take place at and below the particle’s surface. However, there is a lack of suitable surface-specific analytical techniques which directly measure the chemical structure of aerosol particle …

Validation And Exploration Of The Multidimensional Psychological Flexibility Inventory With A Sample Of Adolescents, John Barr

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The current study attempted to further psychological flexibility literature by validating the Multidimensional Psychological Flexibility Inventory (MPFI) with a sample of adolescents (ages 16 and 17). This analysis also examined how the MPFI associates with other indicators of psychological flexibility, distress (depression, anxiety, somatic symptom severity and related distress, difficulties in emotion regulation) and well-being (subjective happiness, life satisfaction, self-compassion, emotional approach coping).

Results from this study suggested that psychological inflexibility as measured by the MPFI positively associated with a number of measures of distress, but generally did not inversely correlate with measures of well-being in a theoretically-consistent manner, which …

Old-Growth Forest Dynamics After Fire And Drought In The Sierra Nevada, California, Usa, Kendall M.L. Becker

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Understanding forest ecosystems is important because forests cover approximately one-third of Earth’s land area, store half of Earth’s carbon, shelter half of Earth’s species, and absorb a quarter of new anthropogenic carbon emissions, slowing climate change. This dissertation provides insight into future forest habitat, fuels, species composition, and structure by investigating what happens to snags, seedlings, and trees in an old-growth forest after a low- to moderate-severity fire.

Chapter II explores how low- to moderate-severity fire changes snag fall rates. Predicting how long snags will remain standing after fire is essential for managing habitat, understanding chemical cycling in forests, and …

Serendipity Shape Function For Hybrid Fluid/Kinetic-Pic Simulations, Trevor V. Taylor

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Sun in our solar system and stars are capable of generating enormous amounts of energy. The process by which these gaseous, celestial bodies are able to produce such large amounts of energy is called thermonuclear fusion. Fusion happens when particles collide with one another at energy levels high enough to overcome the Coulomb force and then release vast amounts of energy. Plasma, the fourth state of matter, is the natural state of stars. Plasma is an ionized gas that consists of negatively and positively charged particles. Stars, which have immense mass, can confine the plasma through their gravity to …

Late Pleistocene Piedmont Records In The Grand Staircase Region, Southern Utah, Alexander K. Short

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Today the climate in the southwestern United States is arid, characterized by desert landscapes and habitats, periods of drought, and arroyo streams that frequently fill with, and erode, through fine riverbed sediments. A series of cliffs and benches rising from the Grand Canyon to the southern plateaus of Utah, known as the Grand Staircase - home to Kodachrome Basin State Park, Bryce Canyon, are a classical example of this environment as we know it today. However, a record spanning the past 300 thousand years is preserved on the steps of the staircase indicating periods in the past where the climate …

Path Planning For Aircraft Under Threat Of Detection From Ground-Based Radar With Uncertainty In Aircraft And Radar States, Austin D. Costley

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Mission planners for manned and unmanned aircraft operating within the detection range of ground-based radar systems are often concerned with the probability of detection. Several factors influence the probability of detection, including aircraft position and orientation, radar position, and radar performance parameters. Current path planning algorithms assume that these factors are known with certainty, but in practice, these factors are estimated and have some uncertainty.

This dissertation explores methods to consider the uncertainty in the detection factors for an aircraft path planner. First, the detection model is extended to include uncertainty in the aircraft position and orientation, radar position, and …

The Relationship Between Bird Species Richness And Human Appropriation Of Net Primary Productivity, Kaeli Mueller

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As humans harvest increasing amounts of biomass, it is crucial to gain an understanding of how much energy is being appropriated and the impact that this could have on ecosystems and biodiversity. The primary way in which humans impact biodiversity loss is through land use change. One way of quantifying the impact of land use change is through human appropriation of net primary production (HANPP). This measurement represents the total amount of energy derived from photosynthesis that humans remove from ecosystems and appropriate for their own use. My research studies the relationship between HANPP and bird species richness at the …