Digital Commons Network^™

Temporal Separation Of Red And Blue Photons Does Not Increase Photon Capture Or Yield Of Lettuce, Jun Liu, Bruce Bugbee

Plants, Soils, and Climate Faculty Publications

Temporal separation of red (R) and blue (B) (alternating R/B) photons has been reported to increase leaf area, photon capture, and yield of lettuce compared with delivering both colors together (concurrent R+B). We grew three diverse lettuce cultivars (Grand Rapids, Rex, and Red Sails) under concurrent R+B photons (9/1 ratio) and alternating R/B photons (9/1 ratio) under an equal daily light integral (DLI) of either 8.6 or 23 mol·m^-2·d^-1. Contrary to five previous studies, we found no increase in either leaf area or fresh mass and dry mass in any of the alternating R/B photon treatments …

Effects Of An Indole Derivative On Cell Proliferation, Transfection, And Alternative Splicing In Production Of Lentiviral Vectors By Transient Co-Transfection, Nataly Carolina Mier, Donald Keith Roper

Biological Engineering Faculty Publications

Lentiviral vectors derived from human immunodeficiency virus type I are widely used to deliver functional gene copies to mammalian cells for research and gene therapies. Post-transcriptional splicing of lentiviral vector transgene in transduced host and transfected producer cells presents barriers to widespread application of lentiviral vector-based therapies. The present study examined effects of indole derivative compound IDC16 on splicing of lentiviral vector transcripts in producer cells and corresponding yield of infectious lentiviral vectors. Indole IDC16 was shown previously to modify alternative splicing in human immunodeficiency virus type I. Human embryonic kidney 293T cells were transiently transfected by 3^rd generation …

Rock Glaciers In Utah, Scott Hotaling, Kendall Becker, Matthew Morriss

All Current Publications

Utah’s primary water supply––winter snowpack––is in decline due to climate warming coupled with more precipitation falling as rain instead of snow. As snowpack dwindles, other sources of cold stream water, such as rock glaciers, will become more important. Rock glaciers contain significant volumes of internal ice covered by debris. This internal ice provides cold meltwater to mountain streams, sustaining flows in summer and supporting biodiversity. Rock glaciers are common in Utah’s mountains and are projected to be more stable under climate change than Utah’s snowpack. Thus, rock glaciers are likely to persist in their current form even as snowpack volumes …

Tree Rings Reveal The Transient Risk Of Extinction Hidden Inside Climate Envelope Forecasts, Margaret E. K. Evans, Sharmila M. N. Dey, Kelly A. Heilman, John R. Tipton, R. Justin Derose, Stefan Klesse, Emily L. Schultz, John D. Shaw

Wildland Resources Faculty Publications

Given the importance of climate in shaping species' geographic distributions, climate change poses an existential threat to biodiversity. Climate envelope modeling, the predominant approach used to quantify this threat, presumes that individuals in populations respond to climate variability and change according to species-level responses inferred from spatial occurrence data—such that individuals at the cool edge of a species' distribution should benefit from warming (the "leading edge"), whereas individuals at the warm edge should suffer (the "trailing edge"). Using 1,558 tree-ring time series of an aridland pine (Pinus edulis) collected at 977 locations across the species' distribution, we found …

Sensitivity Of Ocean Circulation To Warming During The Early Eocene Greenhouse, Sandra Kirtland Turner, Andy Ridgwell, Allison L. Keller, Maximilian Vahlenkamp, Adam K. Aleksinski, Philip F. Sexton, Donald E. Penman, Pincelli M. Hull, Richard D. Norris

Geosciences Faculty Publications

Multiple abrupt warming events ("hyperthermals") punctuated the Early Eocene and were associated with deep-sea temperature increases of 2 to 4 °C, seafloor carbonate dissolution, and negative carbon isotope (δ¹³C) excursions. Whether hyperthermals were associated with changes in the global ocean overturning circulation is important for understanding their driving mechanisms and feedbacks and for gaining insight into the circulation's sensitivity to climatic warming. Here, we present high-resolution benthic foraminiferal stable isotope records (δ¹³C and δ¹⁸O) throughout the Early Eocene Climate Optimum (~53.26 to 49.14 Ma) from the deep equatorial and North Atlantic. Combined with existing …

Influence Of Steroidal Implants And Zinc Sulfate Supplementation On Growth Performance, Trace Mineral Status, Circulating Metabolites, And Transcriptional Changes In Skeletal Muscle Of Feedlot Steers, Dathan T. Smerchek, Emma L. Rients, Amy M. Mclaughlin, Kara J. Thornton, Stephanie L. Hansen

Animal, Dairy, and Veterinary Science Faculty Publications

Angus-cross steers (n = 144; 362 kg ± 20.4) were used to determine the effect of Zn and steroidal implants on performance, trace mineral status, circulating metabolites, and transcriptional changes occurring in skeletal muscle. Steers (n = 6 per pen) were stratified by body weight (BW) in a 3 x 2 factorial. GrowSafe bunks recorded individual feed intake (steer as experimental unit; n = 24 per treatment). Dietary treatments (ZINC; eight pens per treatment) included supplemental Zn as ZnSO₄ at 1) 0 (analyzed 54 mg Zn/kg DM; Zn0); 2) 30 mg/kg DM ( …

Effects Of Differing Radiation Methods On Charge Transport In Polymers, Zachary J. Gibson, Jr Dennison, Virginie Griseri

Conference Proceedings

Spacecraft charging issues are understood and mitigated through an understanding of material properties. Material properties are dynamic in the harsh environment of space. Approximations must be made to simulate the space environment in the laboratory. This paper reports on the investigation of the approximation that energy deposition causes the same aging effects in the materials regardless of the radiation source. Samples of polytetrafluoroethylene (PTFE) and polyether-etherketone (PEEK) were irradiated with x-rays, γ-rays, or electrons at total ionizing dose (TID) of either 2 x 10⁴, 2 x 10⁵, or 2 x 10⁶ rad. Charge was then …

Aspen As Firebreaks At The Development Fringe, Kevin Krasnow, Paul C. Rogers

Aspen Bibliography

Quaking aspen (Populus tremuloides) forests are widely known and prized for their numerous values—biodiversity, habitat, forage, recreation, aesthetics, and others—including as a deterrent to wildfire. This reputation for stopping or slowing flames is explored here, alongside measures that may be taken to facilitate thriving aspen communities near human developments. It is clear that science supporting the premise of aspen as an effective firebreak is far from complete. Yet, how can we benefit from what we do know on this topic to increase the probability of preventing structural fire damage, while also encouraging the valued characteristics of aspen ecosystems?

Climate Considerations For Quaking Aspen Conservation, Douglas Shinneman, Susan Mcilroy, Paul C. Rogers

Aspen Bibliography

Human-caused climate change alters ecosystem processes ranging from local to global scales. As a consequence of climate change we should expect increased rates and intensities of disturbance events. Though we are only beginning to understand what those impacts might be to aspen forests and their diverse plant and animal assemblages, recent science suggests there may be unavoidable effects. In the face of anticipated climate-ecosystem challenges, contemporary managers are searching for guidance on preserving aspen resilience. We suggest crafting strategic yet cautious approaches to minimize effects and facilitate broad resilience. For instance, monitoring conditions in and near aspen forests will help …

Trace Element Contamination In Urban Soils: Testing And Management, Melissa Chilinski, Melanie Stock, Paul R. Grossl, Eli Oliver

All Current Publications

Trace elements, often referred to as heavy metals, naturally occur in the soil at low levels. Certain land use histories can elevate the concentrations of trace elements to levels that present health risks. Understanding which elements and soil test values may impact human or crop health is an important aspect of gardening and micro-farming, particularly in urban environments that are at increased risk of soil contamination. This fact sheet provides instructions on interpreting soil test results for trace elements through the Total Element Composition EPA 3050B Soil Test (#S19) at Utah State University Analytical Laboratory.

Insect Abundance And Richness Response To Ecological Reclamation On Well Pads 5–12 Years Into Succession In A Semi-Arid Natural Gas Field, Michael F. Curran, Jasmine Allison, Timothy J. Robinson, Blair L. Robertson, Alexander H. Knudson, Bee M. M. Bott, Steven Bower, Bobby M. Saleh

Extension Research

Natural gas extraction is a critical driver of the economy in western North America. Ecological reclamation is important to ensure surface disturbance impacts associated with natural gas development are not permanent and to assist native biota. Previous studies in semi-arid natural gas fields within Sublette County, Wyoming, USA have shown insects respond favorably to 1–3-year-old well pads undergoing reclamation compared to older successional reference vegetation communities dominated by Wyoming big sagebrush (Artemisia tridentata spp. Wyomingensis). Here, we examined well pads which were initially seed 5, 8, 10, 11, and 12 years prior to our study. We used a free, image-based …

Estimating Increased Transient Water Storage With Increases In Beaver Dam Activity, Konrad Hafen, Joseph M. Wheaton, Brett B. Roper, Philip Bailey, William W. Macfarlane, Bethany T. Neilson, Christopher J. Tennant

Watershed Sciences Faculty Publications

Dam building by beaver (Castor spp.) slows water movement through montane valleys, increasing transient water storage and the diversity of residence times. In some cases, water storage created by beaver dam construction is correlated to changes in streamflow magnitude and timing. However, the total amount of additional surface and groundwater storage that beaver dams may create (and, thus, their maximum potential impact on streamflow) has not been contextualized in the water balance of larger river basins. We estimate the potential transient water storage increases that could be created at 5, 25, 50, and 100% of maximum modeled beaver dam capacity …

Evolution Repeats Itself In Replicate Long-Term Studies In The Wild, Patrik Nosil, Clarissa F. De Carvalho, Romain Villoutreix, Laura S. Zamorano, Marion Sinclair-Waters, Nicholas P. Planidin, Thomas L. Parchman, Jeffrey Feder, Zach Gompert

Biology Faculty Publications

The extent to which evolution is repeatable remains debated. Here, we study changes over time in the frequency of cryptic color-pattern morphs in 10 replicate long-term field studies of a stick insect, each spanning at least a decade (across 30 years of total data). We find predictable “up-and-down” fluctuations in stripe frequency in all populations, representing repeatable evolutionary dynamics based on standing genetic variation. A field experiment demonstrates that these fluctuations involve negative frequency-dependent natural selection (NFDS). These fluctuations rely on demographic and selective variability that pushes populations away from equilibrium, such that they can reliably move back toward it …

Using An Interrupted Case Study To Engage Undergraduates’ Critical Thinking Style And Enhance Content Knowledge, Kelsey Hall, Katherine Starzec

Journal on Empowering Teaching Excellence

Access the online Pressbooks version of this article here.

The interrupted case study is a structured way to engage students in active learning. Interruptions, or pauses for reflection and discussion scheduled within the case-study presentation, provide students with a chance to collaborate and engage in critical thinking. Critical thinking style, which is a measure of how one tends to think critically, provides insight into how one tackles problem solving. This article describes a pilot project that combined critical-thinking style and an interrupted case study, delivered over a two-class-period time frame, to four college courses. The project’s goals were to assess …

Sustained Ifn Signaling Is Associated With Delayed Development Of Sars-Cov-2-Specific Immunity, Elsa Brunet-Ratnasingham, Sacha Sacha, Haley E. Randolph, Marjorie Labrecque, Justin Bélair, Raphaël Lima-Barbosa, Amélie Pagliuzza, Lorie Marchitto, Michael Hultström, Julia Niessl, Rose Cloutier, Alina M. Flores, Nathalie Brassard, Mehdi Benlarbi, Jérémie Prévost, Shilei Ding, Sai Priya Anand, Gérémy Sannier, Amanda Marks, Dick Wågsäter, Eric Bareke, Hugo Zeberg, Miklos Lipcsey, Robert Frithiof, Anders Larsson, Sirui Zhou, Tomoko Nakanishi, David Morrison, Dani Vezina, Catherine Bourassa, Gabrielle Gendron-Lepage, Halima Medjahed, Floriane Point, Jonathan Richard, Catherine Larochelle, Alexandre Prat, Janet L. Cunningham, Nathalie Arbour, Madeleine Durand, J. Brent Richards, Kevin Moon, Nicolas Chomont, Andrés Finzi, Martine Tétreault, Luis Barreiro, Guy Wolf, Daniel E. Kaufmann

Mathematics and Statistics Faculty Presentations

Plasma RNAemia, delayed antibody responses and inflammation predict COVID-19 outcomes, but the mechanisms underlying these immunovirological patterns are poorly understood. We profile 782 longitudinal plasma samples from 318 hospitalized patients with COVID-19. Integrated analysis using k-means reveals four patient clusters in a discovery cohort: mechanically ventilated critically-ill cases are subdivided into good prognosis and high-fatality clusters (reproduced in a validation cohort), while non-critical survivors segregate into high and low early antibody responders. Only the high-fatality cluster is enriched for transcriptomic signatures associated with COVID-19 severity, and each cluster has distinct RBD-specific antibody elicitation kinetics. Both critical and non-critical clusters with …

Temporal And Spatial Influences On Fawn Summer Survival In Pronghorn Populations: Management Implications From Noninvasive Monitoring, Cole A. Bleke, Eric M. Gese, Juan J. Villalba, Shane B. Roberts, Susannah S. French

Wildland Resources Student Research

Monitoring vital rates allows managers to estimate trends in growth rates of ungulate populations. However, connecting the influence of nutrition on ungulate demography is challenging. Noninvasive sampling offers a low-cost, low-effort alternative for measuring nutritional indices, allowing for an increased understanding of the mechanistic relationships between environmental factors, nutrition, and specific population vital rates. We examined the temporal influence of intrinsic and extrinsic factors on pronghorn (Antilocapra americana) fawn recruitment. We collected fresh fecal samples from adult female pronghorn in five subpopulations spanning three sampling periods associated with critical maternal life-history stages (late gestation, early lactation, breeding season) …

Iaa-Producing Plant Growth Promoting Rhizobacteria From Ceanothus Velutinus Enhance Cutting Propagation Efficiency And Arabidopsis Biomass, Jyothsna Ganesh, Katherine Hewitt, Ananta Raj Devkota, Ty Wilson, Amita Kaundal

Plants, Soils, and Climate Faculty Publications

Climate-induced drought impacts plant growth and development. Recurring droughts increase the demand for water for food production and landscaping. Native plants in the Intermountain West region of the US are of keen interest in low water use landscaping as they are acclimatized to dry and cold environments. These native plants do very well at their native locations but are difficult to propagate in landscape. One of the possible reasons is the lack of associated microbiome in the landscaping. Microbiome in the soil contributes to soil health and impacts plant growth and development. Here, we used the bulk soil from the …

Landscape Influences On Thermal Sensitivity And Predicted Spatial Variability Among Brook Trout Streams In The Southeastern Usa, George P. Valentine, Xinyi Lu, C. Andrew Dolloff, Craig N. Roghair, Jacob M. Rash, Mevin B. Hooten, Yoichiro Kanno

Mathematics and Statistics Faculty Publications

Warming water temperatures as a result of climate change pose a major threat to coldwater organisms. However, the rate of warming is not spatially uniform due to surface-ground-water interactions and stream and watershed characteristics. Coldwater habitats that are most resistant to warming serve as thermal refugia and identifying their locations is critical to regional aquatic conservation planning. We quantified the thermal sensitivity of 203 streams providing current and potential habitat for brook trout (Salvelinus fontinalis) across nearly 1000 linear km of their native range in the southern and central Appalachian Mountains region, USA, and characterized their spatial variability …

Precipitation Seasonality Amplifies As Earth Warms, Xiaoyu Wang, Ming Luo, Fengfei Song, Sijia Wu, Yongqin David Chen, Wei Zhang

Plants, Soils, and Climate Faculty Publications

Precipitation exhibits a pronounced seasonal cycle, of which the phase and amplitude are closely associated with water resource management. While previous studies suggested an emerged delaying phase in the past decades, whether the amplified amplitude has emerged is controversial. Using multiple observational data sets and climate simulations, here we show that the amplification of precipitation annual cycle has emerged in most global land areas since the 1980s, especially in the tropics. These amplifications are mainly driven by anthropogenic emissions, and will be further intensified by 17.6% in the future (2081–2100) under high emission scenario (Shared Socioeconomic Pathways, SSP585), and limited …

Comparison Of Various Theoretical Measures Of Aromaticity Within Monosubstituted Benzene, Caleb K. Swain, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

The effects of monosubstitution on the aromaticity of benzene are assessed using a number of different quantitative schemes. The ability of the mobile π-electrons to respond to an external magnetic field is evaluated using several variants of the NICS scheme which calculate the shielding of points along the axis perpendicular to the molecule. Another class of measures is related to the drive toward the uniformity of C-C bond lengths and strengths. Several energetic quantities are devised to approximate an aromatic stabilization energy and the tendency of the molecule to maintain planarity. There is a lack of consistency in that the …

Liquid Light: Ayahuasca Spirituality And The Santo Daime Tradition, Bonnie Glass-Coffin

Sociology and Anthropology Faculty Publications

Liquid Light is an important addition to the growing number of published accounts that discuss the use of ayahuasca (known by the name, Daime), and its role within Santo Daime, a fundamentally Christian though highly syncretic new religious movement founded in 1930 in the Amazonian state of Acre by an Afro-Brazilian rubber tapper known to followers as Mestre Irineu. The text is a richly descriptive account of Barnard’s own evolution as a fardado (Santo Daime initiate) and includes first-hand accounts of his participation in many kinds and types of Santo Daime worship services in both the United States …

Neurocognitive Functioning In Adults With Trichotillomania: Predictors Of Treatment Response And Symptom Severity In A Randomized Control Trial, Kathryn E. Barber, Douglas W. Woods, Thilo Deckersbach, Christopher C. Bauer, Scott N. Compton, Michael P. Twohig, Emily J. Ricketts, Jordan Robinson, Stephen M. Saunders, Martin E. Franklin

Psychology Faculty Publications

Trichotillomania (TTM) is associated with impairments in response inhibition and cognitive flexibility, but it is unclear how such impairments relate to treatment outcome. The present study examined pre-treatment response inhibition and cognitive flexibility as predictors of treatment outcome, change in these domains from pre- to post-treatment, and associations with TTM severity. Participants were drawn from a randomized controlled trial comparing acceptance-enhanced behavior therapy (AEBT) to psychoeducation and supportive therapy (PST) for TTM. Adults completed assessments at pre-treatment (n=88) and following 12 weeks of treatment (n=68). Response inhibition and cognitive flexibility were assessed using the Stop Signal …

Using Multi-Scale Spatial Models Of Dendritic Ecosystems To Infer Abundance Of A Stream Salmonid, Xinyi Lu, Yoichiro Kanno, George P. Valentine, Jacob M. Rash, Mevin B. Hooten

Mathematics and Statistics Faculty Publications

1. Understanding patterns of species abundance is essential for planning landscape-level conservation. The complex hierarchies of dendritic ecosystems result in different levels of heterogeneity at distinct geographic scales. Species responses to dynamic environmental drivers may also vary spatially depending on their interactions with landscape features. Monitoring abundance by explicitly quantifying their spatial and temporal variation is important for strategic management.

2. We analysed brook trout (Salvelinus fontinalis) count data collected from 173 sites in western North Carolina between 1989 and 2015. We developed a Bayesian hierarchical model that used single- and multi-pass electro-fishing data and characterized their respective …

Investigation Of Poly(Olefin Sulfone) Depolymerization And Its Dust Mitigation Abilities For Potential Use On Spacecraft, Alexandra Stapley, Walter Paxton, David Allred

Utah Space Grant Consortium

The ubiquity of particulate contamination requires dust mitigation techniques to provide low-scatter surfaces and edges on sensitive optical devices in space. Poly(olefin sulfone)s have been shown to photodegrade with the assistance of a photobase generator when exposed to UV light (254 nm) and heat (120°C). These may be applicable to minimizing dust on optical surfaces for space applications. However, their behavior in vacuum has not been fully characterized. We synthesized poly(2-methyl-1-pentene sulfone) (PMPS) and poly(1-hexene sulfone) (PHS) with and without a photobase generator. We studied the photodegradation (172 nm or 254 nm) of thin films in vacuum. Spectroscopic ellipsometry was …

Chemical Herding: Using Chemical Reactions To Steer Colloidal Particles, Mark N. Mcdonald, Cameron K. Peterson, Douglas R. Tree

Utah Space Grant Consortium

Creating the next generation of dynamic colloidal materials that change their structure based on external stimuli may require the capability to precisely manipulate colloidal particles. Colloidal particles can be manipulated using a variety of forces, such as electric, magnetic, and optical, but so far chemical reactions have received less attention. We consider here a novel paradigm for using a chemically active colloidal particle to interact with other, passive colloids and precisely manipulate colloidal particles in a microfluidic device, a strategy which we dub “chemical herding”. Specifically, we show in simulation that chemical herding can be used to move a small …

Enhancing Bioluminescence, Olivia Harrison, Lane Law

Utah Space Grant Consortium

In this project, we aim to develop a strain of Escherichia coli expressing high levels of luminescence via the use of a NanoLuc. derivative, cyan-based LumiFluor (CeNLuc). CeNLuc is a self-illuminating bioluminescent-fluorescent protein that generates biologic light via bioluminescence resonance energy transfer (BRET). We have obtained the plasmids, and are preparing to transform E. coli. cultures.

Assessing Mycorrhizal Influence On Heat-Stressed Poplar Voc Blends, Luis Valdez, Annette Shelton, Mary Alvarez, Lane Law

Utah Space Grant Consortium

VOCs are organic compounds released by plants as gases into the atmosphere. They’ve been shown to play important roles in plant defense, plant-plant interactions, multi-trophic interactions, as well as atmospheric chemistry. Some VOCs can be induced as a result of stress. Some Terpenes & LOX pathway products, in particular, have been shown to be inducible as a result of environmental stress, such as drought or heat. Terpenes, which are made of isoprene subunits, are bigger, more complex molecules and have been shown to generally have and antioxidant function. (Vickers et al. 2009)

Optimization Of Animal Hair Preparation For Scanning Electron Microscopy (Sem), Cristina De La Vieja Medina, Samuel Tobler, Wendy Schatzberg

Utah Space Grant Consortium

This study investigates the best method to prepare animal hair samples for scanning electron microscopy (SEM). The main objective is to identify the most effective method to clean, cut, and position the hair to achieve a better image of the hair without external elements. Various cleaning methods were explored, but the best option was a 15-minute sonication in water followed by a 24-hour immersion in a 90% ethanol-10% methanol mixture. Samples were placed with different types of glue to ensure the hair remained stable. A diamond blade was used to cut the hairs but did not provide the desired results …

Identifying Secondary Metabolites In Corals Of The Order Corallimorpharia For Novel Medicinal Use, Dave Huish, Jane Lee

Utah Space Grant Consortium

Medicinal and bioactive compounds have been found in various species of corals and are currently being used for, but not limited to, anti-inflammatory, cytotoxic/chemotherapy, antimicrobial, antivirus, and antifouling. Currently, acquiring compounds and derivatives is limited by naturally occurring resources. This project is investigating corals from the order Corallimorpharia that are known rapid reproducers and potentially invasive. They demonstrate many of the same attributes as corals that have been studied suggesting that they have similar compounds. The specific coral of interest is Rhodactis howesii. Samples have been obtained, DNA has been isolated, and their genomes are in the process of being …

Artemia In Space, Holbrook Hawkes, Elizabeth Blackburn, Bonnie K. Baxter

Utah Space Grant Consortium

The panspermia hypothesis poses that life originated in space. To test this hypothesis, a model organism capable of withstanding the extreme conditions of space must be used. The brine shrimp genus Artemia represents species of extremophilic zooplankton with adaptations to survive extreme temperatures (-273˚°C to 90˚°C), hydrogen sulfide-reducing environments, HZE particles, oxidation, desiccation, ion exposure, electromagnetic radiation, and anoxia (Skoultchi and Morowitz, 1964; Clegg, 1978; van Stappen, 1996, 2002; Willsie and Clegg, 2001; Clegg and Trotman, 2002; MacRae, 2016). Artemia are so hardy in part due to their ability to produce oviparous encysted embryos instead of live nauplii that can …