Digital Commons Network^™

Electron Transfer And Substrate Reduction In Nitrogenase, Karamatullah Danyal

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The reduction of nitrogen to ammonia by the industrial Haber-Bosch process is considered one of the major scientific breakthroughs of the last century. It is considered to be responsible for approximately one third of the world's current population. This growth over the past 50 or so years accompanied by the changes in dietary habits due to economic growth have markedly increased the demand for fixed nitrogen in the form of fertilizer. The Haber-Bosch process and biological nitrogen fixation has been able to fulfil this demand. However, this industrial process is costly due to its high temperature and pressure requirements. Every …

Quantum Mechanical Study Of Weak Molecular Interactions, Upendra Adhikari

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Molecular interactions play key role in the existence of biomolecules like proteins and nucleic acids, and various materials. Molecular interactions are weak forces that hold different molecules or different fragments of the same molecule together, and are often referred to as noncovalent interactions. Due to the complexity in biomolecules, these interactions are still poorly understood. This dissertation presents results from quantum mechanical simulations of various types of noncovalent interactions, which are extremely important for the structure and functions of biomolecules and materials.

A new sort of noncovalent interaction is identified. This new sort of interaction originates from a direct interaction …

Parental Perceptions Of The Influence Of Digital Media And Technology On Children's Reading Habits At Home, Kurt W. Johnson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study explored how parents from six participating families in Northern Utah felt about the influence of technology and media on their children’s reading at home. Each family was interviewed about their feelings, filled out a survey about the amount of technology devices in the home, and took photographs of the areas in the home where their children read or used technology. Additionally, each family kept a journal recording the technology and reading activities their children participated in over a 1-week period

Parents talked about how their childhood experiences influenced them to create rules for technology and as well as …

Nonlinear Weir Hydraulics, Mitchell R. Dabling

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

A hydraulically undersized control structure (i.e., an emergency dam spillway) could result in water overtopping a dam or riverbanks. To increase hydraulic capacity and reduce flooding risk, nonlinear weirs are being used to replace undersized linear weirs during control structure rehabilitation. The complex geometry of a nonlinear weir creates an infinite number of designs and three-dimensional flow patterns. This study investigates four subjects to further knowledge on two types of nonlinear weir, the piano key and labyrinth.

Weir submergence is a condition when the downstream water level of a weir exceeds the weir crest elevation, and can influence the head-discharge …

Excimer-Monomer Switching Molecular Beacon: The Study On Synthetic Cryptosporidium Dna Detection, Thermodynamics, And Magnesium Effects, Michael L. Davis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The purpose of this study is to quantify and determine the binding of a molecular DNA probe or molecular beacon used in the detection of a known waterborne pathogen Cryptosporidium parvum. The objectives of this study are to determine the stability, sensitivity, and selectivity of the molecular beacon in detecting synthesized Cryptosporidium DNA sequences. The designed probe is based on a two-fluorophore system that is different than similar molecular beacons that utilize a fluorophore and quencher detection method. A comparative study between the two probes was also performed to demonstrate enhanced selectivity of the fluorophore based molecular beacon. Magnesium …

Usda Forest Service Perspectives On Forest Management In A Changing Climate, Jamie E. Laatsch

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As climate change becomes more problematic for the Forest Service (FS) and other federal land management agencies in the U.S., it has become increasingly important to understand how their employees view climate change and related challenges. This study examined how FS employees in the Intermountain West view forest management in the face of climate change, what barriers and opportunities they see in terms of dealing with climate change, and how different levels of agency management view climate change-related issues differently. This study found that many FS employees believe climate change is an important issue; however, they have not done much …

Beetles, Fungi And Trees: A Story For The Ages? Modeling And Projecting The Multipartite Symbiosis Between The Mountain Pine Beetle, Dendroctonus Ponderosae, And Its Fungal Symbionts, Grosmannia Clavigera And Ophiostoma Montium, Audrey L. Addison

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As data collection and modeling improve, ecologists increasingly discover that interspecies dynamics greatly affect the success of individual species. Models accounting for the dynamics of multiple species are becoming more important. In this work, we explore the relationship between mountain pine beetle (MPB, Dendroctonus ponderosae Hopkins) and two mutualistic fungi, Grosmannia clavigera and Ophiostoma montium. These species are involved in a multipartite symbiosis, critical to the survival of MPB, in which each species benefits.

Extensive phenological modeling has been done to determine how temperature affects the timing of life events and cold-weather mortality of MPB. The fungi have also …

Antiviral Activity Of Favipiravir (T-705) Against Lethal Rift Valley Fever Virus Infection In Hamsters, Dionna Scharton

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Rift Valley fever (RVF) is a severe disease affecting both humans and a number of agriculturally important livestock species. The causative agent, RVF virus (RVFV), is primarily transmitted through mosquito bites, with transmission also occurring by exposure to infectious aerosols and direct contact with infected body fluids such as blood. Presently, there are no licensed vaccines or medicines to prevent or treat severe RVFV infection in humans. Favipiravir (T-705) is a novel compound licensed for the treatment of influenza in Japan and presently in Phase III clinical trials in the US, which has demonstrated favorable activity against an attenuated strain …

Ambient Temperature, Calf Intakes, And Weight Gains On Preweaned Dairy Calves, Sheldon D. Holt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

There has been little research conducted on the physiological response of calves to temperatures outside thermal neutrality and its effects on intake and weight gain. The effects of ambient temperature on Holstein dairy calves intakes and weight gain were evaluated over a 12-month period at the Utah State University Caine Dairy.

Ambient temperature was monitored using a weather station located 1.3 kilometers from the dairy. Calf health was monitored daily using the University of Wisconsin-Madison School of Veterinary Medicine scoring criteria. Calves were fed whole milk and free choice calf starter. Weight gain, wither and hip height, starter intake, and …

Mechanical And Physical Properties Of Spider Silk Films Made From Organic And Water-Based Dopes, Chauncey Lewis Tucker

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Spider silk has become a popular material due to its exceptional mechanical and biocompatibility properties. The project team has developed methods of producing and improving the properties of synthetic spider silk films. Other groups have been able to produce similar films having less than impressive mechanical properties using a toxic solvent. The spider silk team here at Utah State University has developed a new way of processing these films to more than triple their mechanical properties and has created a novel form of spider silk films produced from a water-based liquid, making it less expensive, more environmentally friendly, and more …

Dissociation Of The Effects Of Serotonin Reuptake Inhibitor Fluoxetine In Prelimbic Cortex On Disruption Of Timing And Working Memory For Time By Neutral And Negative Emotional Events, Chance Christensen

Undergraduate Honors Capstone Projects

Learning and memory abilities are altered in disorders of the serotonergic system, in disorders such as such as depression, phobias, and post-traumatic stress disorder (PTSD). Among the processes impaired by emotional distracters, and whose dysregulation is documented in affective disorders, is the ability to time in the seconds-to-minutes range, i.e., interval timing. Presentation of distracters during timing tasks result in delays in responding suggesting a failure to maintain subjective time in working memory, as proposed by the Relative Time-Sharing (RTS) model. We investigated the role of the prelimbic cortex in the detrimental effect of anxiety-inducing distracters on the cognitive ability …

Evaluation Of Pro-Inflammatory Biomarkers As Potential Early Indicators Of Acute Respiratory Distress Syndrome (Ards), Makda Solomon Gebre

Undergraduate Honors Capstone Projects

Infections with the 2009 pandemic influenza A(HlNl) virus often leads to acute respiratory distress syndrome (ARDS) in high-risk patients. In these patients, ARDS has a mortality rate of 40-50 % [1]. Patients may die before any intervention is possible since there are few if any early biomarkers that are indicative of ARDS and can be used for diagnosis. In a search for biomarkers that signal early disease progression in mice, multiple acute phase proteins involved with inflammatory responses to infectious stimuli were proposed. Three biomarkers were evaluated for this project. These included C-reactive protein (CRP), Serum Amyloid A (SAA) and …

An Evaluation Of An Auditory Neurophysiological Model, Alysha Nicole Waters

Undergraduate Honors Capstone Projects

Individuals with normal hearing are adept at understanding speech in the presence of noise, such as other speakers or environmental sounds. In contrast, individuals with hearing loss struggle to understand speech in the same adverse conditions. Neural processing in the inferior colliculus (IC) of the brainstem appears to contribute to the ability to separate simultaneous competing sounds. A computational model developed in the Sinex lab reproduces the responses of IC neurons to complex sound mixtures. It seems likely that the model can be applied to improve the processing of speech in noise. The computational model's effectiveness at improving the processing …

Contextual Differences In Reinforcement Affect Self-Control In Shr And Wky Subjects, Jonathan C. Rich

Undergraduate Honors Capstone Projects

The spontaneously hypertensive rat (SHR) is the outcome of selectively breeding its progenitor the Wistar Kyoto (WKY) for hypertension. In the present experiment, the context of reinforcement was manipulated to determine its effect on impulsivity across the SHR and WKY strains of rat. An additional block of delays was added onto the end of a standard delay discounting procedure to vary the context of reinforcement from one condition (0 sec.) to the next (60 sec.). Results indicate that both SHR and WKY subjects made fewer impulsive decisions when a shorter delay followed the longest delay in the task - although …

Recovering The Moca River: An Exploration Through Sustainable Strategies For Developing Countries, Marleny Santana Diaz

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Natural watercourses are being negatively affected by growing urbanization in different cities of the world. Within these circumstances the concept of river restoration has gained relevance, becoming a worldwide priority in water management. In developing countries, river restoration plans, conditioned by social and economic limitations, are mainly focused on a single approach, typically relying on short-term, low technology strategies.

In the long term, these strategies tend to fail because they usually avoid integral solutions that address the interconnected factors contributing to river degradation. Therefore, the purpose of this study is to develop a framework of river restoration planning for developing …

Effect Of Water Immersion And Jet Perturbation On Balance In Older And Younger Adults, Matthew Baldwin

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Background: Although balance exercises are often performed in shallow pools, the efficacy of this practice is not well understood. Purpose: To quantify the effect of water depth and jet intensity on measures of balance in older and younger adults. Subjects: Sixteen older (age = 62.8 °” 9.56 yrs) and fifteen younger (age = 22.5 °” 1.85 yrs) adults. Methods: Posturography data were collected as participants stood quietly for 90 seconds on land and at various water depths and jet intensities. Results: Main effects < 0.001) and pairwise comparisons revealed that all measurements increased with increasing water depth and jet intensity,with older adults increasing statistically less than younger adults at higher jet intensities. Conclusions: Water immersion to the xiphoid process and water jet intensities at or above 40% seem to be environmental conditions that produce the greatest postural sway.

Design Process In Landscape Architecture: Developing A Learning Guide For The Design Workshop Archives At Utah State University, John A. Gottfredson

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

In 2011, Utah State University created the Design Workshop™ Landscape Architecture Archive [Archive] housed in the Merrill-Cazier Library’s Special Collections and Archives. These archives constitute a valuable and unique learning opportunity for students, researchers and professionals in landscape architecture. The Archive consists of the process documents and work product of over 40 years of professional practice in landscape architecture by Design Workshop™, a leading landscape architecture firm. The documents represent a wide and diverse range of projects and locations, but with special emphasis on projects in the unique landscape of the American West. Archive documents are broad in scope, from …

Mvgst: Tools For Multivariate And Directional Gene Set Testing, Dennis S. Mecham

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

There are many platforms available for simultaneously measuring the relative activity, or expression, levels of all genes in an organism. Genes that have systematically dier- ent expression levels between experimental factor levels are called \dierentially expressed". Because genes are annotated based on their known roles in biological processes (BP), molec- ular functions (MF) and cellular components (CC), gene expression levels can be used to determine relative activity levels of individual BP, MF, or CC between experimental fac- tor levels (this is called gene set testing). Often multiple experimental dierences are of interest simultaneously, which necessitates multivariate gene set testing. Only …

Differences In Strike Index Between Treadmill And Aquatic Treadmill Running In Experienced Distance Runners, James Paul Hoover Jr.

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Strike index (SI) quantifies how one’s foot contacts the ground at the beginning of the stance phase of gait. SI is reported as a percentage of the total foot length, with lower percentages indicating a more posterior point of contact, while greater percentages indicate a more anterior point of contact along the foot. Differences in SI may be related to running-related injuries, such that experienced distance runners who are rearfoot (posterior) strikers may have approximately twice the rate of repetitive stress injuries than forefoot (anterior) strikers. Previous research has shown that forefoot strikers, as opposed to rearfoot strikers, produce lower …

Everybody Has The Be Someplace: Twentieth-Centure Pedagogies Of Place And Curricular Possibilities For The Intermountain West, Jacob Sheetz-Willard

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

In 1977, riding a wave of environmental enthusiasm that had crested in the United States over the course of the previous decade, Wendell Berry published his classic agricultural jeremiad, The Unsettling of America. Berry, a novelist, poet, essayist, and farmer decried the environmental and cultural consequences of the large-scale, commercial agriculture that had overtaken the American landscape in the postwar years. He characterized the shift away from a producerist economy of independent farmers to a society oriented around consumption and growth as a Faustian bargain, an agricultural “colonialism” that devalued the individual and ravaged the land in the name of …

Does Motor Learning Generalize Between Distinct Functional Upper Extremity Tasks In Older Adults?, Bergen Elyse Lindauer

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Background: The process of motor learning can decline with age, such that older adults tend to learn new motor skills at a slower rate and to a lesser degree than younger adults. The degree to which aging affects the generalization of motor learning, however, is unclear.

Objective: The purpose of this study was to test whether task-specific training on one functional motor task would 1) result in motor learning, and 2) generalize to two untrained tasks in older adults.

Methods: Twenty-one adults age 65 years and older participated in this study and were assigned to either a training group or …

The Optimal Release Of Sterile Males In Pest Management, Sergio Ramirez

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

With an application of the sterile insect technique, it is our goal to know the optimal rate of production of sterile males in order to control an insect pest invasion and protect crops. Starting with a fundametal relationship between costs of production and feeding rates, we construct an objective functional. We then use the relationships between the dierent stages of female reproduction to build the state equations. Once, we have dened the optimal control problem, we use the simulated annealing algorithm to determine the amount of sterile males to be released at each discrete time event. Multiple calculations are made …

The Definition, Identification, And Cause Of Specific Learning Disabilities: A Literature Review, Joseph M. Cottrell

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Students with specific learning disabilities (SLDs) currently make up approximately 40% of students receiving special education. The definition of SLD has not changed since the original special education law was implemented in 1975. Even with the recent changes to special education law in 2004, the definition stayed the same. Some professionals believe this lack of change reveals consistency while other scholars believe this lack of change reveals a lack of knowledge about what SLDs really are. The definition of SLD gives little insight regarding the etiology of the disorder. There are three prominent theories regarding the cause of SLDs: (a) …

Mapit - A Mapping Application For Freshwater Invertebrate Taxa, Sirisha Pratha

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

With the increasing popularity of the World Wide Web among internet users across the world, the need for building web based applications is increasing with time. The Western Center for Monitoring and Assessment of Freshwater Ecosystems (WMC) and the National Aquatic Monitoring Center (NAMC) jointly host a central database containing biological data that is used to assess the condition of aquatic ecosystems. The information stored in the database contains biological and, - geographical data. This information is made available easily through a simple but effective tool called MAPIT. MAPIT is a search engine which can be used to search through …

Learning Two Languages: Maze Behaviors In Narrative Discourse For Spanish-English Bilinguals, Joel Hopper

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

This study was designed to determine whether mazing behavior in narrative retells of bilingual English and Spanish speaking children was affected by language, complexity of sentence structure, and language development over time. Language transcripts were analyzed from English and Spanish narrative retells elicited from 216 children between the ages of 5 and 9 at the beginning and end of kindergarten, first, and second grade years. Findings revealed a statistically significant difference in the average maze scores and sentence types. A significant interaction was also found between time and language, with maze scores remaining nearly level over time in English and …

A Petrographic Analysis Of The Relationship Between Porosity And Organic Matter In The Permian Phosphoria Formation Of Northeastern Utah, Larry Tackett

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

The Permian Phosphoria Formation is a reservoir for oil and gas in the western United States, as well as a major source of phosphate. This study examined the relationship between phosphate richness and porosity exhibited in the formation. Petrographic analysis was carried out on rock samples collected from the Phosphoria (Park City) Formation located north of Vernal, Utah, on the southern flank of the Uinta Mountains.

The analysis demonstrated an inverse relationship between organic richness and porosity in the Phosphoria Formation. Porosity is controlled by lithology, amount of cementation, weathering, and amount of fecal pellets, which are the source of …

Producing An Ovine Model Of Cystic Fibrosis, Kira Perry Morgado

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Cystic Fibrosis (CF) is an autosomal recessive disease that significantly affects quality of life and lifespan. There are currently no effective animal models of CF that mimic the human disease state. This prevents the development of pharmaceutical treatments for patients. Sheep have been considered for a useful animal model because of their size, life expectancy, and similarities in their anatomy and physiology. In order to generate a sheep transgenic model to study CF we have produced two Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) gene targeting DNA vectors containing large regions of homology to the CFTR gene in sheep. One of …

Ghrelin Concentrations In Milk And Plasma Of Dairy Cows During Early Lactation, Sameer M. Alhojaily

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Ghrelin is a hormone produced mainly by the cells lining the gastric mucosa. Ghrelin was first extracted from human and rat stomachs, and identified as an endogenous stimulator of growth hormone release. Ghrelin is synthesized and produced in several tissues, but the gastric mucosa remains the major source of circulating ghrelin. Besides growth hormone release, ghrelin stimulates appetite and plays some major roles in different organs. In several studies, ghrelin was described as a hormone with multiple functions and diverse biological actions. Ghrelin exists in two major forms, active ghrelin and inactive ghrelin, and only the active from binds to …

The Academic Preparation And Background Of Public Secondary Mathematics Teachers In Utah 1966-1967, Charles Martin Crittenden

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

A random survey was conducted to determine the academic preparation and background of the public secondary mathematics teachers in the state of Utah.

The survey indicated that there is a wide variance in the teacher mathematics preparation between the three types of public secondary schools. The class B high schools have a smaller percentage of well prepared mathematics teachers than either the class A high schools or the junior high schools.

The following facts were discovered: (1) 22.03 percent of all the surveyed mathematics teachers had between 1 and 15 quarter hours of college mathematics preparation, (2) 5.22 percent had …

A Quantitative Approach To The Development Of Ecological Sites And State-And-Transition Models, Matthew W. Van Scoyoc

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Changes in land-use and climate can trigger changes in ecosystem conditions and may be driving ecosystems toward undesired “states” that provide inadequate ecosystem services. If these changes are drastic enough, energy intensive restoration programs are necessary to restore ecosystems to previous states. Landscape classification systems based on “ecological potential” offer a robust framework to evaluate and manage ecosystems. The ecological site concept is one such landscape classification system that has been developed by the USDA Natural Resources Conservation Service (NRCS) and describes ecosystems and ecosystem dynamics relative to “reference conditions” and response to disturbance. Ecological sites have gained popularity with …