Digital Commons Network^™

Tropical Arithmetics And Dot Product Representations Of Graphs, Nicole Turner

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In tropical algebras we substitute min or max for the typical addition and then substitute addition for multiplication. A dot product representation of a graph assigns each vertex of the graph a vector such that two edges are adjacent if and only if the dot product of their vectors is greater than some chosen threshold. The resultS of creating dot product representations of graphs using tropical algebras are examined. In particular we examine the tropical dot product dimensions of graphs and establish connections to threshold graphs and the threshold dimension of a graph.

Relationship Of Nutritional Factors To Cognitive Decline In The Progression Of Dementia: The Cache County Dementia Progression Study, Chelsea Sanders

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Cache County Memory Study at Utah State University studied longitudinal changes in memory and aging in a population-based sample of 5,092 older adults in semirural Cache County, UT. Three hundred twenty-eight participants with dementia were identified through a multi-staged screening and assessment protocol and visited semiannually for up to 8 years in the Dementia Progression Study (DPS). The current project reviews data from the first 6 years due to attrition in later years. Researchers collected information regarding the participants’ demographics, health, lifestyle (nutrition and physical activity), cognitive abilities and neuropsychiatric symptoms as well as their caregivers’ demographics, health, and …

Catalytic Fast Pyrolysis Of Whole Field Pennycress Biomass, Yonas Afewerki Kidane

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

To satisfy the energy demand of the ever-increasing world population as well as to prevent environmental pollution arising from the use of fossil fuels, an alternate source of energy has to be developed. Biomass has the potential to provide a renewable energy source that is inexpensive and environmentally friendly. Field pennycress (Thlaspi arvense L.), previously considered as a weed, has now been found to be an ideal source of bio-fuel production. The focus of this research was to produce upgraded bio-oil by a process known as catalytic fast pyrolysis. A characterization and a temperature degradation profile study helped to …

Computational Prediction And Rational Design Of Novel Clusters, Nanoparticles, And Solid State Materials, Alexander S. Ivanov

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The prediction of structure at the atomic level is one of the most fundamental challenges in materials science. Indeed, the structure is arguably the most important piece of information about a material, as it determines pretty much all properties of a material. Knowing the structure, one can analyze a large number of properties of a material, even before it is synthesized – the crucial importance of structure prediction for computational molecular design. This dissertation describes the technique of reliable theoretical predictions and presents the results on the successfully predicted unusual clusters, nanoparticles and solid state materials. The major part of …

Catalytic Pyrolysis Of Olive Mill Wastewater Sludge, Hamza Abdellaoui

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

From 2008 to 2013, an average of 2,821.4 kilotons/year of olive oil were produced around the world. The waste product of the olive mill industry consists of solid residue (pomace) and wastewater (OMW). Annually, around 30 million m³ of OMW are produced in the Mediterranean area, 700,000 m³ year⁻¹ in Tunisia alone. OMW is an aqueous effluent characterized by an offensive smell and high organic matter content, including high molecular weight phenolic compounds and long-chain fatty acids. These compounds are highly toxic to micro-organisms and plants, which makes the OMW a serious threat to the environment if …

The Underground Gang: Cyclist Group Identity As Expressed Through Folk Art, Folk Events, Narratives, And Community Spaces, Anna P. Christiansen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This thesis is a study of the “underground” cycling community in Ogden, Utah. This thesis establishes a groundwork understanding of the nature of underground cycling culture, particularly in relation to identity. Using folkloric definitions of identity and subculture as my foundation, I conducted fieldwork with the Ogden cycling community to examine four different facets of cyclist activities: folk art, folk events, narratives, and the community’s use of space. Each of the four facets also illustrated the different levels of identity, shifting from individual levels, outward to the performance of identity as an individual and group within a larger local and …

Synthesis Of Fluorogenic Probes For Studying Biomass Degradation And Synthesis Of New Antifungal Aminoglycosides, Qian Zhang

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

For the first project, a library of fifteen commercially purchased and synthetic fluorogenic probes were employed for the investigation of biomass degradation using extract of white-rot fungi. These discoveries prove that it is possible to employ fungi for selective degradation or release of hemicelluloses from biomass. This work is supported by Sun Grant Western Regional Center/DOT "Bioprospecting for Enzymes to Break Lignin-Hemicellulose Bond" ($300,000,09/01/2011-08/31/2013)

The second project is focused on synthesizing new aminoglycoside analogs and exploring the potential to revive traditional antibacterial kanamycin as new type of antifungal agents. Although aminoglycosides antibiotics are mainly used as antibacterial agents, this project …

Using Network Models To Predict Steelhead Abundance, Middle Fork John Day, Or, Monica R. Blanchard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

It is important in the management of threatened and endangered species to have informed population estimates. Population estimates are used to gage whether or not recovery goals are being met. When assessing Pacific salmonids this assessment involves sampling a small subset of the population and then scaling up to estimate larger populations units. This is complicated by the fact that fish populations are not evenly distributed along river systems but respond to fluctuating physical and biological stream properties. We used rapid assessment survey methods and the River Styles classification to explore fish-habitat relationships. River Styles is a classification system that …

Factors Influencing Farmers' Utilization Of Auto-Guidance Technology In Northern Utah, Thomas A. Bleazard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Few studies have documented the use of auto-guidance technologies in the western United States. This study sought to discover farmers’ training preferences and what drives adoption of auto-guidance systems in northern Utah. A presentation of auto-guidance systems was made to crop school attendees. Afterwards an auto-guidance simulator was used to demonstrate to participants how these systems worked and let them engage in an experiential learning experience with laptops. A survey was administered to collect information on farmers’ training preferences and use of auto-guidance technologies. Results of the survey showed that farmers have a large interest in learning about auto-guidance technologies, …

Effects Of Beef Finishing Diets And Muscle Type On Meat Quality, Fatty Acids And Volatile Compounds, Arkopriya Chail

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Consumer evaluation, proximate data, Warner-Bratzler shear force (WBSF), fatty acid (FA) composition and volatile compounds were analyzed from the ribeye steaks (LT) finished on conventional feedlot (FL) and forages, including a perennial legume, birdsfoot trefoil (BFT; Lotus corniculatus), and a grass, meadow brome (Bromus riparius Rehmann, Grass). Representative retail forage (USDA Certified Organic Grass-fed, COGF) and conventional beef (USDA Top Choice, TC) were investigated (n = 6) for LT. Additionally, the effects of diet on round (GM) and chuck (TB) muscles FL, BFT and Grass were explored. Forage-finished beef was less liked in most of the affected …

Anaerobic Co-Digestion Of Algal Biomass And A Supplemental Carbon Source Material To Produce Methane, Yousef Soboh

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The demand on alternative energy is rapidly increasing because the reserves of conventional fuel are decreasing and their impacts on the environment are increasing.
Developing renewable energy sources should receive utmost attention. The production of biofuels like methanol, biodiesel, and methane from various kinds of abundant biomass represents a very attractive energy source that can reduce the dependence on conventional fossil fuels energy.

Since algae contains high amounts of nitrogen and low carbon content, this research focused on anaerobic fermentation of algae to produce methane by blending algae with a supplemental carbon source material, sodium acetate. This was done to …

Grass-Shrub Spatial Associations Over Precipitation And Grazing Gradients In The Great Basin, Usa, Maike F. Holthuijzen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As environmental stress increases, positive plant interactions dominate, resulting in clumped, plant-plant spatial patterns. Positive plant-plant interactions have received more attention in recent years due to their importance to the structure and function of arid ecosystems. Certain plants (nurses), provide benefits that help neighboring plants grow or survive.

I investigated spatial associations between Wyoming big sagebrush (Artemisia tridentata ssp. wyomingensis) and three native grasses (Poa secunda, Elymus elymoides, and Pseudoroegnaria spicata) across a rainfall gradient in the Great Basin, USA. We also explored the effect of grazing on grass-shrub spatial patterns. I hypothesized that positive …

Interactive Computer Simulation And Animation Learning Modules: A Mixed-Method Study Of Their Effects On Students' Problem Solving In Particle Dynamics, Yongquing Guo

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Engineering dynamics is a fundamental core course in many undergraduate engineering curricula. This course is widely regarded as one of the most difficult engineering courses for students to succeed in. A variety of instructional strategies, such as hands-on experimentation, multimedia games, and computer simulation and animation (CSA), have been developed to improve student learning. Among these instructional strategies, CSA has been receiving increasing attention and applications in the international engineering education community. CSA provides students with a visualization tool and a constructivist environment to better understand various engineering problems.

The goal of this dissertation research was to improve student learning …

The Role Of Diet, Erythrocyte Membrane Fatty Acid Composition, And Alzheimer's-Related Genes In Systemic Inflammation In The Cache County Memory Study, Rola Adnan Jalloun

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Alzheimer’s disease (AD) is the most common type of dementia in the elderly, accounting for 60 to 80% of all dementia cases. It affects 5.2 million Americans and 44 million worldwide. This project examines the association between dietary patterns, erythrocyte membrane fatty acids concentration, and AD-related genes in systemic inflammation as indicated by serum C-reactive protein (CRP). All studies performed in this project used the data collected in the Cache County Memory Study (CCMS).

Higher levels of accordance with the Dietary Approaches to Stop Hypertension (DASH) and Mediterranean dietary (MED) patterns were associated with consistently lower levels of CRP in …

Salt And The Rough-Skinned Newt (Taricha Granulosa): Evolutionary Investigations Of Local Adaptation To An Anthropogenic And Natural Stressor, Gareth Rowland Hopkins

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Amphibians are osmotically-challenged due to their highly permeable skin and egg membranes. As such, biologists have mostly ignored their occurrence in saline habitats. The goal of this dissertation was to investigate the ability of amphibians to adapt to inhabit these osmotically-stressful environments. As freshwater resources are increasingly salinized due to a combination of anthropogenic and natural stressors, including road-deicing salt application, coastal storm events, and sea-level rise, it is important to understand the abilities and constraints of sensitive organisms, like amphibians, to persist in these environments. I began by exploring what is known about amphibians inhabiting saline habitats around the …

Population And Community Dynamics Of Freshwater Decapods In Response To Ecological And Anthropogenic Factors In Subtropical Streams In The Caribbean, Omar Perez-Reyes

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Historically, cities were established in close proximity to the richest agricultural lands and freshwater resources. In tropical islands, urbanization occupies a large percentage of land use along streams and rivers and strongly affects the biota and habitat quality. I studied freshwater decapod population and community dynamics in tropical streams of Puerto Rico across human and elevational gradients. I found that: 1) streams with less urbanization had higher decapod species richness and population sizes than the highly urbanized streams; 2) changes in the food webs in the streams are the result of the influence of changes in land use and environmental …

The Role Of Medical Comorbidities On The Risk For Severe Dementia, Institutionalization, And Death In Alzheimer's Disease: A Population Study In Cache County, Utah, Mac J. Gilbert

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Alzheimer’s disease is a progressive disease that impairs cognitive and functional abilities. Without a cure, it is estimated there will be 81 million cases of Alzheimer’s disease by 2040. Life for the individual with Alzheimer’s disease, and their family, changes drastically when the affected individual experiences significant problems with memory, thinking, and ability to complete daily tasks. Some become so debilitated that they need to be placed in a nursing home for supportive care. Until a cure is discovered, it will be important to identify what can be done to help those with Alzheimer’s disease minimize time spent experiencing severe …

Relationships Between Water Developments And Select Mammals On The U.S. Army Dugway Proving Ground, Utah, Bryan M. Kluever

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Water is essential to life. Three general forms of water exist: pre-formed water that is available in food, metabolic water that is created as a byproduct of life processes (e.g., metabolism of fat or breakdown of carbohydrates), and free water (i.e., water available for drinking). As humans settle arid environments, the addition of man-made free water sources (e.g., sewage ponds, catchment ponds) often occurs. In addition, a tool commonly used to increase the abundance or distribution of wildlife species in desert environments is the addition of water sources, usually specifically designed to benefit game species like bighorn sheep (Ovis …

Annotation Tools For Multivariate Gene Set Testing Of Non-Model Organisms, Russell K. Banks

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Microarray chip technology enables researchers to obtain measures of gene activity for essentially all genes in an organism. After grouping genes into biologically meaningful sets, researchers employ certain statistical tests to identify which gene sets (biological processes) show different levels of activity across different treatment groups. The idea is to identify which biological processes are significantly affected by a certain treatment/condition in a given organism.

Non-model organisms (such as sheep) are not widely studied so gene set membership information is not always readily accessible. This thesis work utilizes two microarray studies involving sheep to provide researchers with working examples of …

Linking Form And Process In Braided Rivers Using Physical And Numerical Models, Alan Kasprak

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Braided rivers are characterized by their dynamic nature, and are often significantly reshaped during each flood capable of transporting sediment. Over time, they adjust in response to the frequency and magnitude of floods, along with the amount of sediment available for bar building. Factors such as climate change, dam construction, or land use alteration that change the amount of sediment or water available to braided rivers may subsequently affect channel form. One avenue toward understanding braided channel evolution is to develop simple relationships between channel form and sediment transport, and extrapolate those relationships over extended timescales. With funding from the …

Relative Toxicity Of Select Dehydropyrrolizidine Alkaloids And Evaluation Of A Heterozygous P53 Knockout Mouse Model For Dehydropyrrolizidine Alkaloid Induced Carcinogenesis, Ammon W. Brown

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Dehydropyrrolizidine alkaloids (DHPAs) are toxins produced by approximately 3% of the world’s flowering plants that can be present naturally or as contaminants in animal feed and the human food supply. Many of these compounds have been determined to cause cancer in animals and probably also cause cancer in humans. Due to the difficulty in obtaining sufficient amounts of pure DHPAs most toxicity research has been done via injection of a small amount into the abdomen of a rodent, although natural exposure is exclusively oral. For the same reason, cancer research is limited to a handful of the hundreds of known …

In Vitro, Non-Invasive Imaging And Detection Of Single Living Mammalian Cells Interacting With Bio-Nano-Interfaces, Qifei Li

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Study of bio-nano-interfaces of living mammalian cells will help the identification of cellular alterations (e.g. nucleic acids, amino acids, biomechanics, etc.) due to external stimuli, the design of biomaterials (e.g. nanoparticles, nanotubes) and the investigation on the interaction between cells and bio-nano-interfaces (e.g. cell differentiation on 3D nanostructured materials). The chemical, physical, and mechanical changes of mammalian cells interacting with biomaterials can be investigated by analytical techniques. In this dissertation, cellular responses and property changes are evaluated by non-invasive spectroscopic technique, Raman microscopy (RM), and atomic force microscopy (AFM) combined with traditional biological methods. This dissertation includes the biophysical, biochemical …

The Relationship Of Trait Mindfulness And Positive Mental And Physical Health Among College Students, Sarah A. Potts

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Mindfulness interventions have become an increasingly popular psychological intervention for mental health providers, especially in Westernized countries. Mindfulness interventions are promising in terms of possibly reducing physical and mental health symptoms among a wide variety of clients (including college students) presenting diverse diagnoses. While a number of studies suggest that mindfulness interventions increase mindfulness ability, as demonstrated by an increase in awareness, attention to the present moment, or other components of mindfulness, this assertion has not been validated because many researchers utilizing a mindfulness intervention fail to include measures assessing change in trait mindfulness ability. The present study examined mindfulness …

Analysis Of Quality Of Two Different Varieties Of Peaches With Respect To Organic And Conventional Cultivation Techniques, Shruti D. Sawant

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The worldwide demand for organic produce has been on the rise in recent years. This is a result of consumer concerns about the environment and chemicals used in food production. In addition, consumers have demonstrated that they are willing to pay premium prices for organic produce based on the general assumption that organic produce is more nutritious, environmentally friendly, and better-tasting. There have been several studies that have reported significant differences with organic and conventionally grown produce. Organic fruits and vegetables have been shown to have higher dry matter, antioxidants. In addition, it has also been shown to be smaller …

Digital Soil Mapping Using Landscape Stratification For Arid Rangelands In The Eastern Great Basin, Central Utah, Brook B. Fonnesbeck

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In some parts of the western US there is limited publicly available soil information that can be used to make land management decisions on both public and private land. A goal of the USDI Bureau of Land Management (BLM) in Utah was to map an area in central Utah where such soil maps and value-added information was not available for management and restoration decisions following a wildfire. In 2007, the Milford Flat Fire had burned more than 363,000 acres, removing vegetation that was holding erosion-sensitive soils in place. Following inconsistent results from stabilization and restoration efforts, this study was funded …

Site-Based And Nonsite Archaeological Survey: A Comparison Of Two Survey Methods In The City Of Rocks, Idaho, Patrick Reed Mcdonald

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Archaeology in the western United States frequently employs pedestrian survey of the ground surface to locate and identify archaeological sites. Proponents of alternative survey techniques suggest that site-based survey may be inherently flawed and will not accurately detect, document, or account for artifacts located outside of site boundaries. Site-based survey identifies artifacts, and then searches the area more intensively in an attempt to identify a spatial break in artifact presence. Nonsite approaches utilize point plotting of all discovered artifacts in order to quantitatively identify relationships between artifacts. Quantitative analysis removes a level of researcher bias from the interpretation of past …

Young Widows' Grief: A Descriptive Study Of Personal And Contextual Factors Associated With Conjugal Loss, C. Ryan Dunn

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Grief is a natural condition resulting from the death of a loved one, and one of the most grievous experiences a person can endure is the death of a spouse. Grief can be influenced by relationships, the setting, and the survivor’s personal and social resources. Despite many studies on widowhood, young widows have received little attention. This study of 232 young widows between the ages of 18 and 55 in their first 5 years following loss was done to better describe the personal and social factors associated with younger widows’ grief. An online survey was distributed through social network sites …

Algorithmic Information Theory Applications In Bright Field Microscopy And Epithelial Pattern Formation, Hamid Mohamadlou

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The incredible patterns of multicellular organisms emerge as a result of the operation of Gene Regulatory Networks (GRN) that work during development. Understanding how GRNs produce these complex multicellular patterns is a significant challenge in biology. The primary goal of this dissertation is to employ Algorithmic Information Theory (AIT), also known as Kolmogorov complexity, to unravel the information complexity of GRNs and the resultant multicellular patterns. To obtain a better understanding of Kolmogorov complexity performance, first we study an application in cell image segmentation.

There are an estimated 20,000-25,000 protein-coding genes in the human genome. The sheer size of the …

Pregenomic And Genomic Effects Of 24,25-Dihydroxyvitamin D3, Yang Zhang

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In the United States, the major dietary source of protein is poultry meat, particularly chicken. Phosphorus absorption in chickens is a critical problem in poultry production. It therefore is important to understand the cellular and molecular regulation of phosphorous absorption in intestine to increase efficiency of the process. This would provide the benefits of reducing feed costs and reducing phosphorous excretion, thereby contributing to the sustainability of agriculture in the United States. Therefore, the focus of this thesis is determining the effect of vitamin D metabolites involved in phosphate homeostasis using the chicken as a model.

Fire Environment Analysis At Army Garrison Camp Williams In Relation To Fire Behavior Potential For Gauging Fuel Modification Needs, Scott M. Frost

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Large fires (400 ha +) occur about every seven to ten years in the vegetation types located at US Army Garrison Camp Williams (AGCW) practice range located near South Jordan, Utah. In 2010 and 2012, wildfires burned beyond the Camp’s boundaries into the wildland-urban interface. The political and public reaction to these fire escapes was intense. Researchers at Utah State University were asked if a spatially organized system of fuel treatments could be developed to prevent future escapes. The first step of evaluation was to spatially predict fuel model types derived from a random forests classification approach. Fuel types were …