Digital Commons Network^™

The Effect Of Inbreeding On Holstein-Friesian Breed, Mahdi Nazokkarmaher

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Cattle are domestic animals which have a special role of providing food for human consumption such as beef and milk. In addition, cattle are often chosen as animal models in biomedical and reproductive research. Holstein-Friesian cattle are known as the world's highest producing dairy breed. The Holstein-Friesian breed is differentiated from other dairy breeds based on its distinct characteristics such as high milk production, high calving survival, physiology, body size, and health. However, in the recent past, an increase in inbreeding has resulted in negative effects such as increased calving mortality, reduced milk production, diminished health quality, and decreased fertility. …

Selenate Uptake By Symphyotrichum Ascendens Western Aster, Nathan Hankes

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Symphyotrichum ascendens is a native forb species responsible for selenium poisoning of livestock grazing on mine wastes in the American Intermountain West. While S. ascendens has long been assumed to be a Se accumulator species, this report details the first investigation into its Se uptake, affinity, partitioning, and growth in response to selenate fertilization. The study was performed in a hydroponic growth environment at selenate concentrations of 0.1, 0.25, 0.5, and 1.0 mM selenate. Symphyotrichum ascendens absorbed selenate in percentage concentrations, with the highest tissue concentration of 3.6% Se. Symphyotrichum ascendens exhibited signs of stress, producing 69.2% less biomass at …

Exploiting Self-Organization In Bioengineered Systems: A Computational Approach, Delin Davis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Bio-reactors, also known as microbial factories are used extensively to produce various industrially valuable products. However, scalability and stability of these factories are limited as it is difficult to deliver nutrients and extract product and waste from a large system. Current solution approaches explore changes in the physical configuration of the bio-reactors. Inspired from the nutrient delivery mechanisms of large organisms in nature, this work studies the possibilities of exploiting self-organizing bio-engineered cells which are capable of organizing into a vessel network to support the producer cells in the factory.

Primary goal of this dissertation is to design a proof-of-concept …

An Allometric Approach To Evaluate Physiological And Production Efficiencies In Tree Size For Tart Cherry And Apple Orchard Systems, Zachary T. Brym

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In orchard systems, the size of a tree and the physical structure of its canopy influences how the tree gathers resources and uses them to produce fruit. Smaller orchard trees produce a higher proportion of fruit relative to their size. Small trees also produce higher quality fruit than larger trees. These relationships were demonstrated for apples and tart cherries grown in Utah. In physiological ecology, models called allometries have been developed that explain how the size of wild plants is related to growth, architecture, and reproduction. These models were applied to apple and tart cherry orchard systems and revealed consistent …

The Effects Of Familism And Sibling Relationships On Mexican-Origin Adolescents' Intentions For Alcohol, Tobacco, And Other Drug Use, Molly Mechammil

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The aim of this study was to investigate whether and how sibling relationships and family values intersect to influence Mexican origin youth’s intentions to use substances. Previous research with European-American families has indicated that the nature and quality of sibling relationships in particular plays a large role in whether or not youth will engage in substance use behaviors. In addition, high levels of family and cultural values have also been found to be strong protective factors for substance use in Latino youth. A better understanding of the relation between family values and sibling relationship processes is important in order to …

Biodiversity, Community Dynamics, And Novel Foraging Behaviors Of A Rich Native Bee Fauna Across Habitats At Pinnacles National Park, California, Joan M. Meiners

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Global concern about honeybee declines has spurred feverish research about the status and protection of this single species, yet our understanding of the ecology and issues impacting thousands of species of native bees lags behind. Pinnacles National Park, America's newest, near Salinas, California, is currently the most densely biodiverse area for native bees known on the planet. Recent work by researchers at Utah State University and the USDA-ARS has documented 479 species of native bees in only 42 square miles of this park. During two years of field studies and 308 collector days, we assembled data on 52,853 bee specimens …

Anthropogenic And Natural Stressors And Their Effect On Immunity, Reproduction, And The Stress Response, Lorin A. Neuman-Lee

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Animals must be able to cope with many natural and human-made stressors in order to successfully survive and reproduce. These stressors can come in many forms and are increasing as human activities become more and more prevalent across the globe. In order to cope with these stressors, organisms must allocate limited energy away from processes such as reproduction to mount a stress response. This stress response involves the activation of the hypothalamic-pituitary-adrenal axis and results in a cascade of hormones and down-stream effects, such as changes in reproduction and immune function. In order to understand how reptiles and amphibians cope …

Amelioration Of Chikungunya Through Inhibition Of The Inflammatory Response, Ashley L. Dagley

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

CHIK is an emerging viral disease that is rapidly spreading around the world and causing significant illness in infected people. This virus is spread through the bite of an infected mosquito. Symptoms of disease include high fever, rash, joint pain and arthritis-like symptoms. This disease has recently been reported in the United States, mainly as a result of importation from vacationers to areas affected by this disease. The purpose of this research was to model the disease in mice in order to identify intervention strategies that reduce disease in the hope that it will be useful in the treatment of …

Soil Nutrient Cycling And Water Use In Response To Orchard Floor Management In Stone-Fruit Orchards In The Intermountain West, Catherine Mae Culumber

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

An organic peach orchard trial evaluated the effectiveness of different organic management approaches to enhance soil quality and conserve water without compromise to fruit tree growth and fertility. Two tree-row treatments: ‘straw mulch’ (Triticum aestivum L.) and ‘living mulch’ (Lobularia maritima (L.) Desv.) were tested in combination with two alleyway groundcovers: ‘grass’ (Festuca rubra L. with Lolium perenne L.) and a legume, ‘Birdsfoot trefoil’ (Lotus corniculatus L.). The novel treatments were compared with tillage and weed fabric tree-rows with grass alleyways. After mowing, cuttings from the trefoil alleyway were deposited into tree-rows, which provided additional N …

Amateur Paleontological Societies And Fossil Clubs, Interactions With Professional Paleontologists, And Social Paleontology In The United States, Bruce J. Macfadden, Lisa Lundgren, Kent J. Crippen, Betty A. Dunckel, Shari Ellis

Instructional Technology and Learning Sciences Faculty Publications

Considerable interest exists among lifelong learners in the USA about fossils and the science of paleontology. Unlike some other science-related groups, e.g., astronomy and ornithology, interest in fossils among amateur paleontologists is primarily focused within local clubs and societies with little national coordination. This paper presents the results of formative evaluation of the FOSSIL project, conducted after the project “Kickoff” meeting held at the NAPC (North American Paleontological Convention) in 2014. FOSSIL is developing a national networked community of practice that includes amateur and professional paleontologists. Our research indicates that more than 60 amateur fossil clubs and societies exist in …

Stomatal Differences In Western Aspen And Linkage To Drought Tolerance, Brianne Palmer

Undergraduate Honors Capstone Projects

Aspen (Populus tremuloides) is the most widely distributed broadleaf forest tree in North America. However, aspen are declining rapidly in areas of the Intermountain West. Aspen in this area are prone to experiencing limited moisture and high temperatures. An important aspect of plant physiology when dealing with these stressors is stomatal function. Stomata control the rate of photosynthesis, therefore, the size and frequency of the stomata is likely to influence the survival of the species in this environment.

An unusual feature of aspen is the high frequency of triploidy in the southern portion of its range. Stomata! size …

The Role Of Orexin Receptors In Diurnal Variations In Learning And Memory, Jacob Christian Blotter

Undergraduate Honors Capstone Projects

The brain's ability to learn and remember is a topic of extensive debate and research. Mammals share many similarities, including the way in which information from the outside world is processed and stored. Mammalian circadian rhythms have long been thought to be essentially involved with these processes. Orexin, a neurotransmitter in the brain, plays a crucial role in arousal and circadian rhythm. This study is designed to explore the brain's ability to process and store information at different times of the circadian period, and to explore the role of orexin by comparing the performance of normal (wild-type) mice and abnormal …

Dynamic Stability On Land And In Waist-Deep Water: Comparison Between Young And Middle Aged Adults, Christie Bunnell

Undergraduate Honors Capstone Projects

The purpose of this study was to compare dynamic stability on land and in water, between young and middle-aged adults performing plyometric exercises. Twenty adults were asked to volunteer: Young = 24.40 ± 2.63 years, n = 10 and middle-aged = 46.80 ± 3.05 years, n = 10. Participants performed three plyometric exercises (countermovement jump, squat jump, and drop landing) on land and in waist-deep water. Dynamic stability was assessed during landing for each exercise using a time to stabilization (TTS) paradigm. Data were collected via a waterproof force plate positioned on an adjustable-depth pool floor and analyzed with a …

Relationships Of Beef Cattle Temperament With Feedlot Performance, Jeffrey James Briscoe

Undergraduate Honors Capstone Projects

This study determined relationships between beef cattle temperament and their feedlot performance. Thirty-five Angus cross-bred steers and heifers (18 steers and 17 heifers) were placed in the Utah State University feedlot to take part in the feed trial. Cattle temperament was measured by a chute score (CS, ranging from 1 = calm and not moving to 5 = rearing and violently struggling) and flight speed. Flight speed was measured by two observers to determine how long the animal took to travel 12 feet from the exit of the squeeze chute. Feedlot performance was assessed by body weight (BW) measurements, average …

The Effect Of Pure Infrared Light On The Growth Of Rhodospirrilum Rubrum, Jordan Lee Wilkes

Undergraduate Honors Capstone Projects

Scientists who study aquatic ecosystems quickly notice a diversity of pathways that different microbes and organisms can use to metabolize nutrients found in common ponds or pools. Competition for vital resources, such as light and inorganic minerals, allow only certain organisms to grow in certain niches within these ecosystems. Rhodospirillum rubrum is a gram negative, photosynthetic bacteria that competes for light within aquatic ecosystems in order to survive. R. rubrum is believed to specifically absorb light for photosynthesis at wavelengths in the range of infrared light. It was found that R. rubrum indeed can grow in "dark", anaerobic environments by …

Spa47 Is An Oligomerization - Activated Type Three Secretion System (T3ss) Atpase From Shigella Flexneri, Jamie Lee Kingsford

Undergraduate Honors Capstone Projects

Gram-negative pathogens often use conserved type three secretion systems (T3SS) for virulence. The Shigella type three secretion apparatus (T3SA) penetrates the host cell membrane and provides a unidirectional conduit for injection of effectors into host cells. The protein Spa4 7 localizes to the base of the apparatus and is speculated to be an ATPase that provides the energy for T3SA formation and secretion. Here, we developed an expression and purification protocol, producing active Spa47 and providing the first direct evidence that Spa47 is a bona fide ATPase. Additionally, size exclusion chromatography and analytical ultracentrifugation identified multiple oligomeric species of Spa47 …

Effectiveness Of Traditional Land-Based Therapy Vs Aquatic-Based Therapy After Acl Reconstruction, Philip M. Boozer

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

The most common knee injury is a torn anterior cruciate ligament (ACL) which occurs to 1 in 3,000 people annually, making an ACL reconstruction (ACLR) surgery the sixth most common orthopedic procedure (Cohen, Yucha, Ciccotti, Goldstein, Ciccotti, & Ciccotti, 2009 Edgar, Zimmer, Kakar, Jones, Schepsis, 2008 Zamarioli., Pezolato, Mieli, Shimano. 2008). Over the past 20 years, there has been considerable growing attention to rehabilitation programs for post ACL reconstruction, but still no optimal rehabilitation program has been found. (Momberg, Louw, Crous. 2008 Zamarioli, Pezolato, Mieli, Shimano. 2008 Tovin, Wolf, Greenfield, Crouse, Woodfin. 1994). Though there have been improvements to rehabilitation …

Modeling Of Mating Encounters: The Classical Mass Action Paradigm And An Application To Pest Control, Katherine R. Snyder

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

The growth of a two-sex population is undoubtedly dependent upon the dynamics of its mating encounter rates. Encounter rates are influenced by several factors that affect the modeling of a population. In this work we first look at the law of mass action as applied to mating encounter rates. We review the underlying assumptions of mass action and present a derivation using dimensional reduction and simulated data. This approach led to a revised proportionality constant that seems to produce results in better accord to experimental data than does the original constant. We also explore numerically how random fluctuations on the …

Fine Mapping Of A Major-Effect Qtl Controlling Rhizomatous Growth In Perennial Wildrye Hyrbrids, Jenny L. Clements

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Quantitative trait loci (QTL) analysis is the science of discovering genes or chromosome regions that influence the expression of quantitative traits. Statistical methods for doing this have evolved from single marker analysis of variance (ANOVA) to more complex approaches such as interval mapping and multiple QTL mapping. The goal of this project was to refine a previously identified QTL chromosome region responsible for rhizome growth in grass hybrids developed from two species of the Triticeae tribe by categorically progeny testing seven recombinant genotypes containing cross overs in a major-effect rhizome QTL. In addition, the analysis addressed physical concerns with the …

Evapotranspiration Estimation: A Study Of Methods In The Western United States, Clayton S. Lewis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Theoretical water use of well-watered vegetation in the western United States was investigated by comparing a gridded dataset developed from satellite and ground instruments to weather stations representative of irrigated agricultural conditions. Since wetter environments are cooler and therefore subject to lower levels of evaporation than the same scenario with warmer temperatures, models derived from dryland and often populated areas overestimate potential plant needs in semi-arid or arid conditions. Evaluation of the model revealed an acceptable fit for air temperatures and solar radiation but with less confidence in humidity and wind speeds. Ultimately, the last two parameters were minor components …

Effects Of Thermosonication On Microbial Population Reduction And Solubility Index In Skim Milk Powder, Nicola F. Beatty

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Thermosonication has been researched as a means to improve shelf life, quality, and functional properties in dairy products. This study explored the effects of thermosonication on the inactivation of Geobacillus stearothermophilus in concentrated skim milk as a function of total solids content, temperature, and time and investigated changes in the solubility of the skim milk. Results showed thermosonication had an increased bactericidal effect on both vegetative cells and spores as compared to heat treatment alone without affecting solubility. A model was developed using response surface analysis showing that log reductions produced by thermosonication can be predicted based on a polynomial …

The Demography And Determinants Of Population Growth In Utah Moose (Alces Alces Shirasi), Joel S. Ruprecht

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Moose (Alces alces) occur widely in northern regions of the world. Across their distribution, the species is considered to be of high intrinsic, ecological and recreational value. Populations of moose along their southern range limit in North America have shown erratic population dynamics in recent decades including severe numeric declines in some areas. Moose in Utah belong to the Shiras subspecies, which is a relatively understudied population segment. Additionally, moose in Utah represent the southernmost naturally occurring moose populations worldwide. Concerns over possible declines and a paucity of baseline data on moose within the state prompted the Utah …

Intraspecific Variation In The Response Of Elymus Elymoides To Competition From Bromus Tectorum, Rebecca K. Mann

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In the western United States, thousands of acres of degraded rangelands are dominated by aggressive invasive species such as cheatgrass (Bromus tectorum), and are seeded by managers with native plants in an attempt to restore species diversity, wildlife habitat, and ecosystem services. There are many options for obtaining seeds of native plants; for instance, they can be collected from the region where restoration is to occur, or they may be purchased through commercial producers. For a given plant species, managers may also select seeds from unique subspecies, cultivars, and populations. Genetic differentiation among these within-species groups can not only affect …

Biodiversity Prioritization: A Comparison Of Data Types, Kari Norman

Undergraduate Honors Capstone Projects

The identification of important areas for biodiversity is essential for effective allocation of limited conservation resources. Prioritizing regions for conservation based on biodiversity is typically done using global biodiversity maps created using range map data for one or more taxa. While the use of range maps makes pragmatic sense since large-scale survey data is rarely available, it is important to understand the sensitivity of the results to the use of range map data. We studied how prioritizations may change between data types using the North American Breeding Bird survey (BBS) and BirdLife International range maps as a comparison case study. …

The Influence Of Prior Motor Actions On Motor Planning In Children With Autism Spectrum Disorder, Daisha Lynn Cummins

Undergraduate Honors Capstone Projects

Studies have found children with Autism Spectrum Disorder (ASD) have a rigidity of motor plans and difficulties planning and executing movements. Children with ASD also exhibit repetitive behaviors such as nail biting and rocking back and forth. When planning for movements, repetitive behaviors might manifest as difficulty in formulating new or switching between different motor plans. In typically developing individuals, actions are often influence by recently performed motor actions. We sought to determine if this influence was stronger in children with ASD.

A rotation motor task was created to evaluate the rigidity of motor planning of five children with ASD …

Factors Of Profitable Field Crop Selection, Jacob Thomas Briscoe

Undergraduate Honors Capstone Projects

Methods of crop selection are varied, depending on a variety of factors, including resources, climate, soil type, and potential marketability of the crop. This study utilizes a theoretical farm of one thousand farmable acres to estimate the costs and returns as well as the resources associated with cultivating, planting, irrigating, harvesting and selling the crop products. The theoretical farm is situated in southwest Idaho in any of the counties of Ada, Canyon, Elmore, Owyhee and Payette. The crops grown are typical of the area; the crops examined are field corn (Zea mays), alfalfa (Medicago sativa) and …

Xhab Microgravity Food Growth Chamber, Nathan I. Stacey

Undergraduate Honors Capstone Projects

NASA and other organizations are preparing to send humans deeper into space, including a NASA manned mission to Mars in the 2030s, in order to learn more about our universe and the origin of life and to ensure the survival of the human race. Long journeys in space require efficient, dependable, and sustainable methods to provide for astronauts' metabolic needs such as oxygen, water, and food. In order for microgravity plant growth chambers to become a viable solution, several challenges encountered by past growth chambers must be resolved.

One problem with existing space food growth chambers is hypoxia, or lack …

Using Accelerometer Data To Remotely Assess Predation Activity Of Arctic Wolves, Heather Shipp

Undergraduate Honors Capstone Projects

Arctic wolves (Canis lupus arctos) play an important role in ecosystems located in the far northern regions of the world; however, unlike the gray wolves in Yellowstone National Park, little information is available about High Arctic wolves and their impacts on prey populations. This research uses data received from two GPS radio-collared Arctic wolves located in the Fosheim Peninsula on Ellesmere Island. Each radio-collar was programmed to record a position every 30-60 minutes, as well as the wolfs activity movement (forwards - backwards and left - right), which was generated by an accelerometer housed within the radio-collar. This …

Trauma And Touch: Apprehension Of Touch And Relationship Quality In Survivors Of Military Sexual Trauma, Danielle Christensen

Undergraduate Honors Capstone Projects

Sexual assault is linked to poor romantic relationships but sexual assault in the military is linked to more severe outcomes than civilian assault (Surís et al., 2007).One in four women Veterans report military sexual trauma (MST; VA, nd). MST is highly correlated with Post-Traumatic Stress Disorder and lower relationship satisfaction, which is problematic as relationship quality buffers against PTSD and dysfunction secondary to MST. Relationship quality is multidimensional and includes satisfaction with physical touch; the effects of sexual trauma on touch apprehension have not been examined in those with MST. Moreover, it is not clear whether contact MST (e.g., rape) …

Pedicle Lengthening Spacer, David S. Wood

Undergraduate Honors Capstone Projects

In the lumbar region of the spine, the spinal cord travels through a small hole in your vertebrae called the spinal canal. There is a medical condition where the spinal canal becomes restricted. This condition is called stenosis. There are several reasons for this pinching of the spinal column. These include the growth of bone spurs, the accumulation of ligaments in the canal, or a genetic trait. When these occur in the lower five vertebrae (the lumbar region), it is called lumbar stenosis. The symptoms of Lumbar Stenosis are shooting pain through the legs, especially during activity, and feelings of …