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2019 Utah State University Orientation Guide, Utah State University

The Utah Statesman

A special supplemental magazine provided by The Utah Statesman to take a closer look at some of the services and departments available at Utah State University.

Ant Diversity Patterns Across Tropical Elevation Gradients: Effects Of Sampling Method And Subcommunity, John T. Longino, Michael G. Branstetter, Philip S. Ward

All PIRU Publications

Local diversity may be influenced by niche assembly processes involving competition for limited resources, or by niche conservatism and the length of time clades have had to diversify. Mid‐elevation peaks in ant diversity on wet forest elevational gradients are most consistent with niche conservatism effects. However, it is possible that subsets of the ant community vary in the degree to which niche assembly processes are important, and this may be revealed by sampling methods that bias toward particular subsets. A previous study of ant‐elevation patterns in Middle American wet forest relied on Winkler sampling, a method that samples much of …

New Ideas From An Old Concept: The Hydrogen Bond, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Ongoing studies of the hydrogen bond (HB), in which a hydrogen (H) atom acts as a bridge between a pair of chemical groups, continues to offer new ideas about this interaction that have applications to biochemical processes. The ability of a proton to transfer within a HB can be controlled by conformational changes that cause small alterations to the HB geometry. The CH group, widely prevalent in biological systems, participates in HBs and contributes to the structure and stability of commonly occurring protein secondary structures such as the β-sheet. The concept of the HB has been extended to systems where …

Utah State Magazine, Fall 2019, Utah State University

Utah State Magazine

The quarterly magazine for friends and alumni of Utah State University.

Violation Of Electrostatic Rules: Shifting Balance Between Pnicogen Bond And Lone Pair−Π Interaction Tuned By Substituents, Zongqing Chi, Tong Yan, Qing-Zhong Li, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Complexes were formed pairing ZCl3 (Z=P, As, Sb) with C2R4 (R= H, F, CN). The first interaction present is a pnicogen bond between the Z atom and the C=C π-bond. This bond weakens as the H atoms of ethylene are replaced by electron-withdrawing F and CN and the potential above the alkene switches from negative to positive. In the latter two cases, another set of noncovalent bonds is formed between the Cl lone pairs of ZCl3 and the π*(C=C) antibonding orbital, as well as with the F or CN substituents. The growing strength of these interactions, coupled with a large …

Urban Alaskan Moose: An Analysis Of Factors Associated With Moose-Vehicle Collisions, Lucian R. Mcdonald

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As human populations continue to grow and encroach into wildlife habitats, instances of human-wildlife conflict are on the rise. Increasing numbers of reported wildlife-vehicle collisions (WVCs) provide tangible evidence of anthropogenic impacts on wildlife as well as increasing threats to human health and safety. Increasing WVCs are of particular concern, especially those involving large-bodied ungulates such as moose (Alces spp.), because of the increased risk of property damage, personal injuries, and human fatalities. Motorists directly involved in a WVC are at risk of injury or mortality, but other motorists are also put at risk due to road obstructions and traffic …

Trout Habitat In An Altered Gravel-Bed River With An Augmented Flow Regime, Jacob B. Stout

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Diamond Fork River, and it’s tributary Sixth Water Creek, has been highly altered in terms of shape, function, and ecologicaly due to large, trans-basin flows additions to the system for irrigation starting in the early 1900s. Flows were exceptionally large for 80 years, after which they were reduced in 2004. Larger than natural flows during the low flow season were then added to the river in an effort to improve ecosystem health and recreational fishing opportunities. Since the prescription additional flow during low flow seasons, the river channel has undergone further change, most noticeably in the form of narrowing. …

Stamina: Stochastic Approximate Model-Checker For Infinite-State Analysis, Thakur Neupane

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Reliable operation of every day use computing system, from simple coffee machines to complex flight controller system in an aircraft, is necessary to save time, money, and in some cases lives. System testing can check for the presence of unwanted execution but cannot guarantee the absence of such. Probabilistic model checking techniques have demonstrated significant potential in verifying performance and reliability of various systems whose execution are defined with likelihood. However, its inability to scale limits its applicability in practice.

This thesis presents a new model checker, STAMINA, with efficient and scalable model truncation for probabilistic verification. STAMINA uses a …

Women In Agriculture: Living In A "Man's World", Ennea A. Fairchild

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Despite women’s involvement in agriculture, their contributions have been overlooked in society. Women make up at least a third of those involved in agriculture as farmers, landowners, and in agricultural faculty positions. These numbers do not appear to be decreasing. Although there are several agricultural roles, this study focuses primarily on those women who own agricultural land, but do not farm the land themselves. Rather, these women rent it out to a farmer who operates the land for them (women nonoperating landowners or WNOLs, in short). Previous research suggests these women may be facing considerable barriers as an agricultural landowner …

Optimization Of Biogas Production By Use Of A Microbially Enhanced Inoculum, Anna Doloman

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

A renewable energy source, biogas, comprises of methane (80%) and carbon dioxide (15%), and is a great alternative to the conventional fossil-based fuels, such as coal, gas and oil. Biogas is created during anaerobic biological digestion of waste materials, such as landfill material, animal manure, wastewater, algal biomass, industrial organic waste etc. A biogas potential from organic waste in the United States is estimated at about 9 million tons per year and technology allows capture of greenhouse gases, such as methane and carbon dioxide, into a form of a fuel. In the light of global climate change and efforts to …

Investigation Of The Biosynthetic Process Of Indigoidine, Yi Chen

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Indigoidine is a natural blue dye with antioxidant and antimicrobial activities. It has also been used as an indicator for gene expression based on its distinctive blue color. Similar to the industry blue dye indigo, indigoidine has a promising potential to be applied in industry as a blue dye. However, the indigoidine production level in the original microorganisms was very low. Heterologous expression of the responsible synthetase gene in Escherichia coli can facilitate the fast and large-scale production of indigoidine. Also, a good understating of the working mechanism of the synthetase is favorable for the industrial application.

In our previous …

Towards Conjunctive Management Of Surface Water And Groundwater In The Mediterranean, Matthew Lagod

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

One of the fundamental principles of integrated water resources management is the interconnected nature of water in the hydrological cycle, including the interactions between surface water and groundwater. Although scientists have long recognized these interactions, in many cases they are not reflected in natural resources policies and management practices. As a result, the allocation of water resources by public authorities may not be optimal, and may furthermore lead to long-term degradation of water resources and the ecosystems they sustain. In response to this and to growing pressure on water resources from increasing human populations, water experts have developed a body …

Discovery And Engineering Of An Endophytic Pseudomonas Strain From Taxus Chinensis For Efficient Production Of Zeaxanthin Diglucoside, Ozkan Fidan, Jixun Zhan

Biological Engineering Faculty Publications

Background

Endophytic microorganisms are a rich source of bioactive natural products. They are considered as promising biofertilizers and biocontrol agents due to their growth-promoting interactions with the host plants and their bioactive secondary metabolites that can help manage plant pathogens. Identification of new endophytes may lead to the discovery of novel molecules or provide new strains for production of valuable compounds.

Results

In this study, we isolated an endophytic bacterium from the leaves of Taxus chinensis, which was identified as Pseudomonas sp. 102515 based on the 16S rRNA gene sequence and physiological characteristics. Analysis of its secondary metabolites revealed …

General Catalog 2019-2020, Utah State University

University Catalogs

This catalog contains information on the Academic Departments and Programs as well as Course Descriptions for the above school year at Utah State University. To avoid large file downloads, the Academic Departments and Programs information is located in this file. The Course Description information is located in the secondary file.

Using Tree-Ring Growth And Stable Isotopes To Explore Ponderosa Pine Ecophysiological Responses To Climate Variability And The 2012-2015 California Drought, Rachel M. Keen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Climate warming in recent decades has resulted in more frequent and severe drought events in the western United States. These changes are projected to continue, making it exceedingly important to understand how forests respond to severe drought stress, and how we can manage these forests to reduce mortality during future events. The 2012-2015 California drought is a recent example of a severe, multi-year drought that was coupled with an epidemic-scale outbreak of western pine beetle, killing nearly 90% of ponderosa pines in the central and southern Sierra Nevadas. In the first portion of this study, we compared pairs of surviving …

Exploring The Capacity Of Bacteria For Natural Product Biosynthesis, Ozkan Fidan

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This dissertation is focused on exploring the potential of bacteria for the biosynthesis of natural products with the purposes of generating novel natural product derivatives and of improving the titer of pharmaceutically important natural products.

A wide variety of compounds from various sources have been historically used in the treatment and prevention of diseases. Natural products as a major source of new drugs are extensively explored due to their huge structural diversity and promising biological activities such as antimicrobial, anticancer, antifungal, antiviral and antioxidant properties. For instance, penicillin as an early-discovered antimicrobial agent has saved millions of lives, indicating the …

Eared Grebe Nesting Ecology And Chronology Along The Great Salt Lake, Utah, Leah M. Delahoussaye

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Eared Grebes (Podiceps nigricollis) are migratory birds that build their nests over water and in large groups called colonies. Their typical breeding range is in central southern Canada and northern United States; however, a previously uncertain number of Eared Grebes (grebes) also nest around the Great Salt Lake (GSL), Utah, at the southern edge of their breeding range. Little is known about the habitat requirements for grebe nesting colonies at such low latitudes and if they are different from colonies found elsewhere. My objectives for this research were to determine the status of the grebe nesting population as …

Electronic Transmutation: An Aid For The Rational Design Of New Chemical Materials Using The Knowledge Of Bonding And Structure Of Neighboring Elements, Katie A. Lundell

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Everything in the universe is made up of elements from the periodic table. Each element has its own role that it plays in the formation of things it makes up. For instance, pencil lead is graphite. A series of honeycomb-like structures made up of carbon stacked on top of one another. Carbon’s neighbor to the left, boron doesn’t like to form such stacked honeycomb-like structures. But, what if there was a way to make boron act like carbon so it did like to form such structures? That question is the basis of the electronic transmutation concept presented in this dissertation. …

Genetic Mapping Of Grass Monoculture And Grass-Legume Mixture Compatibility Qtls In Intermediate Wheatgrass, John Mortenson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Due to increased environmental stewardship and fertilizer prices, there is increased interest in using legume mixes in perennial croplands. The objective of this study was to compare quantitative genetic parameters and quantitative trait loci (QTLs) associated with intermediate wheatgrass (Thinopyrum intermedium) when grown in 1) a non-competitive spaced environment, 2) a polyculture with alfalfa (Medicago sativa), and 3) a monoculture with crested wheatgrass (Agropyron desertorum). Traits evaluated include plant growth characteristics (Zadok’s maturity, height, and tiller count), biomass, and forage nutritive value (CP, NDF, ADF, ADL, IVTD, NDFD, NFC, ME, RFQ). A linkage map …

Quantifying The Predictability Of Evolution At The Genomic Level In Lycaeides Butterflies, Samridhi Chaturvedi

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Stephen Jay Gould, a great scientist and evolutionary biologists, suggested that if we could replay the tape of life, we would not have observed similar course of events because evolution is stochastic and if affected by several events. Since then, the possibility that evolution is repeatable or predictable has been debated. Studies using large-scale evolution experiments, long-term data for individual populations, and controlled experiments in nature, have demonstrated phenotypic and genetic convergence in several taxa. These studies suggest that despite some randomness, predictable evolutionary patterns can emerge on a large temporal and spatial scale. However, a few cases also exist …

The Rise Of Populist Rhetoric And The Mainstreaming Of A Party? Testing The Rhetorical Shifts Between Front National’S Presidents Jean-Marie Le Pen And Marine Le Pen, Muriel C. Mcgregor

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Populist movements have been on the rise across Europe and the Americas. In France, the far right-wing party, Le Front National, has experienced recent growth in electoral success. Scholars of the Front National have in part attributed the party’s success to its increased use of populist rhetoric. This thesis examines the populist rhetoric used between the Front National’s past president Jean-Marie Le Pen and current president Marine Le Pen in order to test these scholarly claims. Based on their campaign speeches for the 2002, 2007, 2012, and 2017 French presidential elections, I conducted a quantitative dictionary-based analysis on …

Characterization Of Biofilms In A Synthetic Rhizosphere Using Hollow Fiber Root-Mimetic Systems, Michelle Bonebrake

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The area around a plant’s roots hosts a complex and diverse microbial community. This environment can include a large number of bacteria that live on the surface of the root and benefit from the nutrients that the roots exude into the soil. These microbes can in turn be beneficial to the plant by protecting the roots from harmful fungi or stressful environmental conditions such as drought. In this thesis, several root-mimetic systems (RMSs) were developed for the study and growth of plant-beneficial bacteria in the laboratory environment. The RMS uses a porous hollow fiber used in hemodialysis as a surface …

Investigation Of The Molecular Determinants And Extrinsic Factors That Regulate Prmt Product Specificity, Tamar B. Cáceres

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Protein arginine methylation is an important modification of proteins, involved in many cellular processes. Some examples are transcription, RNA editing, cellular communication, DNA repair, viral replication and chromatin remodeling. In recent years, the significance of protein arginine methyltransferases (PRMTs) in human diseases has been increasingly studied, especially in cardiovascular disease and cancer. Although the importance of these enzymes is recognized, the understanding of how exactly PRMTs function is still limited. Very little information is available to explain how or why any of the different PRMTs interact with other proteins or, what determines where in that protein to place their methyl …

Developmental Trajectories Of Aggression From Toddlerhood To Early Adolescence In Boys And Girls: Exploring Early Predictors And Later Outcomes, Sujung Park

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Early behavior problems, such as childhood aggression, emerge in the second year of life and decrease prior to school entry for typically developing children. However, some children show frequent and persistent aggression and may be at risk for subsequent difficulties that lead to poor school and life outcomes. The current study aimed to identify aggression patterns in children from toddlerhood to early adolescence for boys and girls together and separately. This study also explored early influences on aggressive behaviors at age two, such as mothers’ parenting behaviors, cumulative family risk, and early child characteristics. A range of difficulties in early …

Investigation Of Protein Dynamics And Communication In Adomet-Dependent Methyltransferases: Non-Ribosomal Peptide Synthetase And Protein Arginine Methyltransferase, Kyle M. May

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

For many enzymes to function correctly they must have the freedom to display a level of dynamics or communication during their catalytic cycle. The effects that protein dynamics and communication can have are wide ranging, from changes in substrate specificity or product profiles, to speed of reaction or switching activity on or off. This project investigates the protein dynamics and communication in two separate systems, a non-ribosomal peptide synthetase (NRPS), and a protein arginine methyltransferase (PRMT).

PRMT1, the enzyme responsible for 80% of arginine methylation in humans, has been implicated in a variety of disease states when functioning incorrectly. For …

A Universal Mechanism For N2 Binding To And Differing Reactivity Of The E4(4h) State Of Mo-, V-, And Fe-Nitrogenases, Derek Franklin Harris

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As a basic building block in many biological molecules, the element nitrogen (N) is essential for life. Dinitrogen (N₂) is abundant in Earth’s atmosphere, but this form is biologically unavailable. To be biologically available, N₂ must undergo a reduction reaction to the fixed form, ammonia (NH₃). The industrial Haber-Bosch process, which accounts for approximately 50% of the worlds fixed nitrogen, uses energy from fossil fuels to achieve high pressures and temperatures to catalyze the reaction. The energy used by Haber-Bosch accounts for approximately 2% of the world’s annual supply. The remainder of fixed nitrogen is …

Dementia Caregiver Coping Strategies And Caregiver-Care Recipient Relationship Closeness: Associations With Care-Recipient Outcomes, Stephanie Behrensberg

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This project used data from the Dementia Progression Study, a longitudinal, population-based study based out of Cache County, Utah. Statistical models were used to examine the association between caregiver factors, the care environment, and cognitive outcomes in persons with dementia. Mediational analyses were also used to examine if the care environment, inferred for nutritional status, engagement in physical and cognitively stimulating activities, mediated the relationship between the closeness/caregiver coping strategies and cognition in persons with dementia. Results showed that closer caregiver-care recipient relationships were associated with better nutritional status and more engagement in number of cognitively stimulating activities as well …

Changing Access: Building A Culture Of Accessibility Within Normalized Technical Communication Practices, Sherena Huntsman

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As a field intricately connected to human experience and interaction, technical and professional communication (TPC) is historically, ethically, and practically tooled to address issues of equality, diversity, and access. While these important issues have not always been the focal point of TPC, the recent turn toward social justice has scholars asking critical questions about how users access information, how specific design practices may privilege some and disenfranchise others, and how we can be more inclusive across our communication practices. In this dissertation, I argue that it is within reach of TPC to address the specific problem of access—the gap between …

Thylacine Dreams: The Vernacular Resurrection Of An Extinct Marsupial, Daisy M. Ahlstone

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This thesis explores the folk resurrection of the thylacine through artwork and symbolic interaction. The thylacine, better known as the Tasmanian tiger, is a marsupial that suffered a government-sanctioned massacre leading to its extinction in 1936. The thylacine’s status as a hidden animal has inspired what folklorists call “ostensive practice”; people not only actively seek out the thylacine in the wilderness of Tasmania today and share their sightings online, but they have also incorporated the thylacine as a symbol of hope and perseverance into various forms of folk art.

There have been upwards of five thousand documented sightings of the …

Synthesis And Biological Studies Of Amphiphilic Compounds Derived From Saccharides And Aminoglycosides, Madher N. Alfindee

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Adjacent cells communicate through gap junctions (GJs). These GJs are formed by head to head docking of two hemichannels (HCs) from two adjacent cells. HCs are connexin hexamer proteins. Connexin mutation is the most frequent cause of childhood hearing loss. This hearing impairment affects 2 in every 2000 children. Inhibition of the HCs might be the key factor to treat such disorders. A library of amphiphilic kanamycins was synthesized to be tested as HC inhibitors. These compounds showed excellent inhibition activity in comparison with the parent compound (kanamycin A) with less toxicity.

A library of monosaccharide esters with varying carbon …