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Remote Sensing Of Ploidy Level In Quaking Aspen (Populus Tremuloides Michx.), Benjamin Blonder, Bente J. Graae, Burke Greer, Marja Haagsma, Kenny Helsen, Rozália E. Kapás, Henry Pai, Jolanta Rieksta, Dillon Sapena, Christopher J. Still, Richard Strimbeck

Aspen Bibliography

1. Ploidy level in plants may influence ecological functioning, demography and response to climate change. However, measuring ploidy level typically requires intensive cell or molecular methods.
2. We map ploidy level variation in quaking aspen, a dominant North American tree species that can be diploid or triploid and that grows in spatially extensive clones. We identify the predictors and spatial scale of ploidy level variation using a combination of genetic and ground‐based and airborne remote sensing methods.
3. We show that ground‐based leaf spectra and airborne canopy spectra can both classify aspen by ploidy level with a precision‐recall harmonic mean of 0.75–0.95 and …

Quantitative Trait Loci (Qtl) For Forage Traits In Intermediate Wheatgrass When Grown As Spaced-Plants Versus Monoculture And Polyculture Swards, John S. Mortenson, Blair L. Waldron, Steven R. Larson, Kevin B. Jensen, Lee R. Dehann, Michael D. Peel, Paul G. Johnson, J. Earl Creech

Plants, Soils, and Climate Faculty Publications

It has been hypothesized that the genetic control of forage traits, especially biomass, for grass plants growing as spaced-plants versus swards is different. Likewise, the genetic control of compatibility in grass–legume polyculture mixtures is assumed to be different than for forage production in a grass monoculture. However, these hypotheses are largely unvalidated, especially at the DNA level. This study used an intermediate wheatgrass mapping population to examine the effect of three competition environments (spaced-plants, polyculture, and monoculture) on classical quantitative genetic parameters and quantitative trait loci (QTL) identification for biomass, morphology, and forage nutritive value. Moderate to high heritable variation …

Timing Of Invasion By Africanized Bees Coincides With Local Extinction Of A Specialized Pollinator Of A Rare Poppy In Utah, Usa, Amber D. Tripodi, Vincent J. Tepedino, Zachary M. Portman

All PIRU Publications

The introduction of exotic species can have profound impacts on mutualisms between native species in invaded areas. However, determining whether a new invader has impacted native species depends on accurately reconstructing the invasion timing. The arrival of Africanized honey bees (AHB) in southern Utah at some point between 1994 and 2011 has recently been implicated in the local extinction of Perdita meconis, a native specialist pollinator of an endangered poppy, Arctomecon humilis. Although AHBs were purportedly first detected in southern Utah in 2008, their presence in nearby Nevada, Arizona, and New Mexico by 1998–2001 suggests that they may …

Worldwide Relationships In The Fern Genus Pteridium (Bracken) Based On Nuclear Genome Markers, Paul G. Wolf, Carol A. Rowe, Sylvia P. Kinosian, Joshua P. Der, Peter J. Lockhart, Lara D. Shepherd, Patricia A. Mclenachan, John A. Thomson

Ecology Center Publications

PREMISE: Spore-bearing plants are capable of dispersing very long distances. However, it is not known if gene flow can prevent genetic divergence in widely distributed taxa. Here we address this issue, and examine systematic relationships at a global geographic scale for the fern genus Pteridium.

METHODS: We sampled plants from 100 localities worldwide, and generated nucleotide data from four nuclear genes and two plastid regions. We also examined 2801 single nucleotide polymorphisms detected by a restriction site-associated DNA approach.

RESULTS: We found evidence for two distinct diploid species and two allotetraploids between them. The “northern” species (Pteridium aquilinum) has distinct …

Developmental And Molecular Changes Underlying The Vernalization-Induced Transition To Flowering In Aquilegia Coerulea (James), Bharti Sharma, Timothy A. Batz, Rakesh Kaundal, Elena M. Kramer, Uriah R. Sanders, Valerie J. Mellano, Naveen Duhan, Rousselene B. Larson

Center for Integrated Biosystems Publications

Reproductive success in plants is dependent on many factors but the precise timing of flowering is certainly among the most crucial. Perennial plants often have a vernalization or over-wintering requirement in order to successfully flower in the spring. The shoot apical meristem undergoes drastic developmental and molecular changes as it transitions into inflorescence meristem (IM) identity, which then gives rise to floral meristems (FMs). In this study, we have examined the developmental and gene expression changes underlying the transition from the vegetative to reproductive phases in the basal eudicot Aquilegia coerulea, which has evolved a vernalization response independently relative …

Data From: Pnas2019 Postdoc Mentoring Survey, David F. Feldon, Kaylee Litson, Soojeong Jeong

Browse all Datasets

The doctoral advisor, typically the principal investigator (PI), is often characterized as a singular or primary mentor who guides students using a cognitive apprenticeship model. Alternatively, the cascading mentorship model describes the members of laboratories or research groups receiving mentorship from more senior laboratory members and providing it to more junior members (i.e., PIs mentor postdocs, postdocs mentor senior graduate students, senior students mentor junior students, etc.). Here we show that PIs laboratory and mentoring activities do not significantly predict students skill development trajectories, but the engagement of postdocs and senior graduate students in laboratory interactions do. We found that …

The Alfalfa Insecticide Management (Aim) Toolkit: Linking Insecticide Fate Modelling With Alfalfa Pest And Beneficial Insect Toxicity Endpoints, Kimberly J. Hageman

Funded Research Records

No abstract provided.

Effects Of Land-Use Change And Prey Abundance On The Body Condition Of An Obligate Carnivore At The Wildland-Urban Interface, Courtney A. C. Coon, Bradley C. Nichols, Zara Mcdonald, David C. Stoner

Wildland Resources Faculty Publications

Land-use change represents a primary driver of carnivore population declines, yet some large carnivore species have acclimated and persist within anthropogenically altered landscapes. Previous attention has been focused on the genetic and behavioral implications of land-use changes, but few studies have investigated how human development impacts animal physiology and health. Here we examined how body condition scores of a widely distributed North American carnivore, the puma (Puma concolor), are affected by anthropogenic habitat modification. For this study we collected 252 puma camera trap events across a land-use gradient in the San Francisco Bay Area. We found that pumas …

A Case For Eustress In Grazing Animals, Juan J. Villalba, Xavier Manteca

Wildland Resources Faculty Publications

Herbivores grazing in extensive systems are exposed to a series of challenges, rooted in the inherent spatial and temporal variability of their environment that potentially constrain their health, nutrition, and welfare. Nevertheless, in this review, we argue that challenges induced by some biotic (e.g., vegetation) and abiotic (e.g., terrain) factors may also be viewed as “positive” sources of stress or eustress, since they present complex problems, that when solved successfully elicit a greater degree of behavioral plasticity and adaptability in grazing animals. Chemically and structurally diverse landscapes require animals to display complex behaviors and exhibit adaptive capabilities, like building a …

Theoretical Studies Of Ir And Nmr Spectral Changes Induced By Sigma-Hole Hydrogen, Halogen, Chalcogen, Pnicogen, And Tetrel Bonds In A Model Protein Environment, Mariusz Michalczyk, Wiktor Zierkiewicz, Rafał Wysokiński, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Various types of σ-hole bond complexes were formed with FX, HFY, H₂FZ, and H₃FT (X = Cl, Br, I; Y = S, Se, Te; Z = P, As, Sb; T = Si, Ge, Sn) as Lewis acid. In order to examine their interactions with a protein, N-methylacetamide (NMA), a model of the peptide linkage was used as the base. These noncovalent bonds were compared by computational means with H-bonds formed by NMA with XH molecules (X = F, Cl, Br, I). In all cases, the A–F bond, which lies opposite the base and is responsible for …

The Utah Statesman, September 10, 2019, Utah State University

The Utah Statesman

Weekly student newspaper of Utah State University in Logan.

Climate Change Accelerates Recovery Of The Tatra Mountain Lakes From Acidification And Increases Their Nutrient And Chlorophyll A Concentrations, Jiří Kopáček, Jiří Kaňa, Svetlana Bičárová, Janice Brahney, Tomáš Navrátil, Stephen A. Norton, Petr Porcal, Evžen Stuchlik

Watershed Sciences Faculty Publications

We evaluated changes in the concentration of cations, anions, nutrients (dissolved organic carbon, DOC; phosphorus, P; and nitrogen forms including nitrate, NO₃⁻ and total organic nitrogen, TON), and chlorophyll a (Chl-a) in 31 Tatra Mountain lakes in Slovakia and Poland during their recovery from acidic deposition (1992–2018). Typical effects of decreasing acidic deposition on the lakes’ water composition, such as decreasing base cation concentrations, were confounded by climate change and catchment characteristics, including areal proportions of well-developed soils and scree. A climate-related increase in physical erosion provided freshly exposed unweathered granodiorite (the dominant bedrock) to chemical …

Milk Oligopeptide Inhibition Of (Α)-Tocopherol Fortified Linoleic Acid Oxidation, Haina Yuan, Jinyan Gong, Kun Tang, Jinge Huang, Gongnian Xiao, Jianmin Lv

Biological Engineering Student Research

This study investigated the effect of milk oligopeptides and (α)-tocopherol on inhibition of linoleic acid oxidation using Fe²⁺-vitamin C induced linoleic acid oxidation model through analysis of malondialdehyde, peroxide value, and conjugated diene and triene in the model. The alteration of milk oligopeptides maximal absorption wavelength, fluorescent feature, and secondary structure were further investigated to elucidate the interactions between milk oligopeptide and (α)-tocopherol that altered the inhibitory effect of linoleic acid oxidation. Results showed that Pro-Tyr-Tyr-Ala-Lys (PYYAK) and Ile-Pro-Ile-Gln-Tyr (IPIQY) with (α)-tocopherol significantly inhibited the oxidation of linoleic acid and reduced the formation of malondialdehyde by 38% and …

Chalcogen Bonding Of Two Ligands To Hypervalent Yf4 (Y=S, Se, Te, Po), Wiktor Zierkiewicz, Rafal Wysokiński, Mariusz Michalczyk, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

The ability of two NH3 ligands to engage in simultaneous chalcogen bonds to a hypervalent YF4 molecule, with Y=S, Se, Te, Po, is assessed via quantum calculations. The complex can take on one of two different geometries. The cis structure places the two ligands adjacent to one another ina pseudo-octahedral geometry, held there by a pair of σ-hole chalcogen bonds. The bases can also lie nearly opposite one another, in a distorted octahedron containing one π-hole and one strained σ-hole bond. The cis geometry is favored for Y=S, while Te,and Po tend toward the trans structure; they are nearly equally …

The Future Of Blue Carbon Science, Peter I. Macreadie, Andrea Anton, John A. Raven, Nicola Beaumont, Rod M. Connolly, Daniel A. Friess, Jeffrey J. Kelleway, Hilary Kennedy, Tomohiro Kuwae, Paul S. Lavery, Catherine E. Lovelock, Dan A. Smale, Eugenia T. Apostolaki, Trisha Brooke Atwood, Jeff Baldock, Thomas S. Bianchi, Gail L. Chmura, Bradley D. Eyre, James W. Fourqurean, Jason M. Hall-Spencer, Mark Huxham, Iris E. Hendriks, Dorte Krause-Jensen, Dan Laffoley, Tiziana Luisetti, Núria Marbà, Pere Masque, Karen J. Mcglathery, J. Patrick Megonigal, Daniel Murdiyarso, Bayden D. Russell, Rui Santos, Oscar Serrano, Brian R. Silliman, Kenta Watanabe, Carlos M. Duarte

Watershed Sciences Faculty Publications

The term Blue Carbon (BC) was first coined a decade ago to describe the disproportionately large contribution of coastal vegetated ecosystems to global carbon sequestration. The role of BC in climate change mitigation and adaptation has now reached international prominence. To help prioritise future research, we assembled leading experts in the field to agree upon the top-ten pending questions in BC science. Understanding how climate change affects carbon accumulation in mature BC ecosystems and during their restoration was a high priority. Controversial questions included the role of carbonate and macroalgae in BC cycling, and the degree to which greenhouse gases …

Modeling Spatially And Temporally Complex Range Dynamics When Detection Is Imperfect, Clark S. Rushing, J. Andrew Royle, David J. Zilkowski, Keith L. Pardieck

Ecology Center Publications

Species distributions are determined by the interaction of multiple biotic and abiotic factors, which produces complex spatial and temporal patterns of occurrence. As habitats and climate change due to anthropogenic activities, there is a need to develop species distribution models that can quantify these complex range dynamics. In this paper, we develop a dynamic occupancy model that uses a spatial generalized additive model to estimate non-linear spatial variation in occupancy not accounted for by environmental covariates. The model is flexible and can accommodate data from a range of sampling designs that provide information about both occupancy and detection probability. Output …

Risk Of Predation: A Critical Force Driving Habitat Quality Perception And Foraging Behavior Of Granivorous Birds In A Nigerian Forest Reserve, Umarfarooq A. Abdulwahab, Samuel Temidayo Osinubi, Jacinta Abalaka

Ecology Center Publications

Background: Understanding the factors that influence the foraging behavior and perception of habitat quality by animals has long been the focus in ecology. Due to the direct effect resource acquisition has on an individual’s fitness and species’ survival, predation risk is considered widely to be a major driver of foraging decision. The objectives of this study were to investigate how predation risk is perceived by granivorous bird species with respect to different habitat and microhabitat types, time of day and food types in Amurum Forest Reserve, Nigeria, with a view to direct future conservation planning.

Methods: For 3 months, we …

Drones As A Tool To Monitor Human Impacts And Vegetation Changes In Parks And Protected Areas, Francisco Javier Ancin-Murguzur, Lorena Munoz, Christopher Monz, Vera H. Hausner

Environment and Society Faculty Publications

Increased visitation to protected areas could have adverse impacts on the conservation values in the protected areas, and therefore effective visitor monitoring methods are needed to meet the complex management challenges that arise. Collecting data on human impacts is highly time consuming, thus requiring more effective tools that allow for high-quality and long-term measurements. In this study, we show how unmanned aerial vehicles (i.e. UAV or drones) could be used to monitor tourism impacts in protected areas. Tourism has boomed in national parks in Norway in recent years, such as in Jotunheimen National Park for which this study applies. We …

Function And Transcriptional Regulation Of Bovine Torc2 Gene In Adipocytes: Roles Of C/Ebpγ, Xbp1, Insm1 And Znf263, Rajwali Khan, Sayed Haidar Abbas Raza, Zainaguli Junjvlieke, Wang Xiaoyu, Matthew D. Garcia, Ibrahim Elsaeid Elnour, Wang Hongbao, Zan Linsen

Animal, Dairy, and Veterinary Science Faculty Publications

The TORC2 gene is a member of the transducer of the regulated cyclic adenosine monophosphate (cAMP) response element binding protein gene family, which plays a key role in metabolism and adipogenesis. In the present study, we confirmed the role of TORC2 in bovine preadipocyte proliferation through cell cycle staining flow cytometry, cell counting assay, 5-ethynyl-20 -deoxyuridine staining (EdU), and mRNA and protein expression analysis of proliferation-related marker genes. In addition, Oil red O staining analysis, immunofluorescence of adiponectin, mRNA and protein level expression of lipid related marker genes confirmed the role of TORC2 in the regulation of bovine adipocyte differentiation. …

The Importance Of Spatial Data To Open - Access National Archaeological Databases And The Development Of Paleodemography Research, Erick Robinson, Christopher Nicholson, Robert L. Kelly

Sociology, Social Work and Anthropology Faculty Publications

With generous support from the National Science Foundation, we have spent the past four years developing an archaeological radiocarbon database for the United States. Here, we highlight the importance of spatial data for open-access, national-scale archaeological databases and the development of paleodemography research. We propose a new method for analyzing radiocarbon time series in the context of paleoclimate models. This method forces us to confront one of the central challenges to realizing the full potential of national-scale databases: the quality of the spatial data accompanying radiocarbon dates. We seek to open a national discussion on the use of spatial data …

An Fmri Exploration Of Information Processing In Electronic Networks Of Practice, Thomas O. Meservy, Kelly Fadel, C. Brock Kirwan, Rayman D. Meservy

Data Analytics & Information Systems Faculty Publications

Online forums sponsored by electronic networks of practice have become an important source of information for individuals seeking solutions to problems online. However, not all information available in a forum is helpful or accurate, requiring knowledge seekers to evaluate and filter the solutions they encounter. Most forums offer contextual cues to help knowledge seekers make evaluation decisions, yet little is understood about the cognitive processes and neural mechanisms that underlie how information on these forums is filtered and evaluated. This paper draws on literature in cognitive neuroscience and NeuroIS to develop exploratory research questions about the role of both content …

Pleasantview Hills Aspen Stand Diversity Project: Environmental Assessment, Pocatello Field Office

Aspen Bibliography

The Bureau of Land Management (BLM) Pocatello Field Office (PFO) has prepared this Environmental Assessment (EA) to analyze the environmental impacts of implementing treatments on aspen stands in the Pleasantview Hills area. This EA discloses the direct, indirect, and cumulative environmental effects that would result from implementation of this proposal as required by the National Environmental Policy Act (NEPA) of 1969. This EA will determine whether to prepare an Environmental Impact Statement (EIS) or a Finding of No Significant Impact (FONSI) based on environmental impact context and intensity, thereby informing agency decision making. Guidance for EA organization is determined by …

Comparison Of Skin Biomechanics And Skin Color In Puerto Rican And Non-Puerto Rican Women, Yadira Regueira, Jamison D. Fargo, Deborah Tiller, Kathleen Brown, Carla Clements, Barbara Beacham, Emily Brignone, Marilyn S. Sommers

Psychology Faculty Publications

Objective: Skin biomechanics are physical properties that protect the body from injury. Little is known about differences in skin biomechanics in racial/ethnic groups and the role of skin color in these differences. The purpose of this study was to determine the relationship between skin biomechanics (viscoelasticity, hydration) and skin color, when controlling for demographic and health-related variables in a sample of Puerto Rican and non-Puerto Rican women.

Methods: We performed a secondary analysis of data from 545 women in a longitudinal, observational study of skin injury in Puerto Rico and the United States. Data included measures of skin viscoelasticity, skin …

Demographic Assessment Of The Triploid Parthenogenetic Lizard Aspidoscelis Neotesselatus At The Northern Edge Of Its Range, Lise M. Aubry, Douglas Eifler, Kaera Utsumi, Susannah S. French

Biology Faculty Publications

Aspidoscelis neotesselatus (Colorado Checkered Whiptail) is a hybrid-derived triploid parthenogenetic lizard with a natural range overlapping with six counties in southeastern Colorado, USA. It has also become established by anthropogenic causation in Grant County, Washington State, approximately 1,600 km northwest of its range in Colorado. Large parts of its natural range are within military reservations. Reduced genetic variation in all-female species makes them especially susceptible to environmental disturbances, such as military activities. At Fort Carson (FC), we estimated an abundance index via a catch-per-unit estimator, weekly survival using Cormack-Jolly-Seber models, and body condition and clutch size as indicators of population …

Anisotropic Singlet Fission In Single Crystalline Hexacene, Dezheng Sun, Gang-Hua Deng, Bolei Xu, Enshi Xu, Xia Li, Yajing Wu, Yuqin Qian, Yu Zhong, Colin Nuckolls, Avetik R. Harutyunyan, Hai-Lung Dai, Gugang Chen, Hanning Chen, Yi Rao

Chemistry and Biochemistry Faculty Publications

Singlet fission is known to improve solar energy utilization by circumventing the Shockley-Queisser limit. The two essential steps of singlet fission are the formation of a correlated triplet pair and its subsequent quantum decoherence. However, the mechanisms of the triplet pair formation and decoherence still remain elusive. Here we examined both essential steps in single crystalline hexacene and discovered remarkable anisotropy of the overall singlet fission rate along different crystal axes. Since the triplet pair formation emerges on the same timescale along both crystal axes, the quantum decoherence is likely responsible for the directional anisotropy. The distinct quantum decoherence rates …

A Review And Updated Classification Of Pollen Gathering Behavior In Bees (Hymenoptera, Apoidea), Zachary M. Portman, Michael C. Orr, Terry Griswold

All PIRU Publications

Pollen is the primary protein and nutrient source for bees and they employ many different behaviors to gather it. Numerous terms have been coined to describe pollen gathering behaviors, creating confusion as many are not clearly-defined or overlap with existing terms. There is a need for a clear yet flexible classification that enables accurate, succinct descriptions of pollen gathering behaviors to enable meaningful discussion and comparison. Here, we classify the different pollen gathering behaviors into two main classes: active and incidental pollen collection. Active pollen collection is subdivided into six behaviors: scraping with the extremities, buzzing, rubbing with the body …

Controls And Adaptive Management Of Nitrification In Agricultural Soils, Jeanette M. Norton, Yang Ouyang

Plants, Soils, and Climate Faculty Publications

Agriculture is responsible for over half of the input of reactive nitrogen (N) to terrestrial systems; however improving N availability remains the primary management technique to increase crop yields in most regions. In the majority of agricultural soils, ammonium is rapidly converted to nitrate by nitrification, which increases the mobility of N through the soil matrix, strongly influencing N retention in the system. Decreasing nitrification through management is desirable to decrease N losses and increase N fertilizer use efficiency. We review the controlling factors on the rate and extent of nitrification in agricultural soils from temperate regions including substrate supply, …

Collaborative Research: Rol: Using Reaction Norms To Link Genomic And Phenotypic Variation With Regional-Scale Population Responses To Environmental Change, Peter Adler

Funded Research Records

No abstract provided.

Phylogeny Of The Subfamilies Of Ichneumonidae (Hymenoptera), Andrew M.R. Bennett, Sophie Cardinal, Ian D. Gauld, David B. Wahl

Biology Faculty Publications

A combined morphological and molecular phylogenetic analysis was performed to evaluate the subfamily relationships of the parasitoid wasp family Ichneumonidae (Hymenoptera). Data were obtained by coding 135 morphological and 6 biological characters for 131 exemplar species of ichneumonids and 3 species of Braconidae (the latter as outgroups). The species of ichneumonids represent all of the 42 currently recognized subfamilies. In addition, molecular sequence data (cytochrome oxidase I “DNA barcoding” region, the D2 region of 28S rDNA and part of the F2 copy of elongation factor 1-alpha) were obtained from specimens of the same species that were coded for morphology (1309 …

(0,1)-Matrices, Discrepancy And Preservers, Leroy B. Beasley

Mathematics and Statistics Faculty Publications

Let m and n be positive integers, and let R = (r₁, . . . , r_m) and S = (s₁, . . . , s_n) be nonnegative integral vectors. Let A(R,S) be the set of all m × n (0, 1)-matrices with row sum vector R and column vector S. Let R and S be nonincreasing, and let F(R) be the m × n (0, 1)-matrix, where for each i, the ith row of F(R, …