Digital Commons Network^™

Thermal Anomaly And Water Origin In Weebubbie Cave, Nullarbor Karst Plain, Australia, Peter Buzzacott, Grzegorz Skrzypek

KIP Articles

Study region The Nullarbor is one of the largest contiguous karst plains in the world. Despite the absence of surface relict karst features and arid climate, the subterranean flooded cave systems are among the largest in the world. The cave waters are usually brackish and their temperatures vary over a large range (18.6–23.7 °C) suggesting potential input of warm groundwater to some of the caves. The studied Weebubbie Cave of total length ∼500 m penetrates to ∼140 m below ground and ∼40 m below sea level. Study focus Temperature loggers were deployed in the water at various depths and distances …

Making Change In The Nickel City: Food Banking And Food Insecurity In Buffalo, Ny During The Covid-19 Pandemic, Sarah E. Bradley

USF Tampa Graduate Theses and Dissertations

In March 2020, the coronavirus 2019 (COVID-19) pandemic began to spread across the United States. The pandemic disrupted the food system in an unprecedented fashion, exacerbating existing inequalities and contributing to increased rates of food insecurity and charitable food use. This research project considers the food system of Buffalo, New York and seeks to capture the way in which both food insecure households and the food pantries that serve them adapted to the pandemic. Using data from 75 client surveys, 52 qualitative semi-structured interviews with food pantry staff and clients, and 15 participatory GIS mapping interviews, this mixed-methods project describes …

Protura (Arthropoda: Hexapoda) In Slovenian Caves, Loris Galli, Franc Janžekovič, Peter Kozel, Tone Novak

International Journal of Speleology

Protura is a small class of Hexapoda, generally poorly known, and rather scarce data on its occurrence in caves are scattered throughout literature on fauna in caves and in some papers on Protura. Although the cave-dwelling fauna is relatively well studied in Slovenia, published records on Protura are rare. In this paper, data on the occurrence and abundance of Protura in Slovenian caves are considered. Various statistical analyses were performed to compare caves with Protura to those without in 60 intensively monitored cavities to detect any differences in the selected environmental conditions. No significant difference was obtained. Samples collected from …

Microhabitat Selection Of A Sicilian Subterranean Woodlouse And Its Implications For Cave Management, Giuseppe Nicolosi, Stefano Mammola, Salvatore Costanzo, Giorgio Sabella, Rosolino Cirrincione, Giovanni Signorello, Marco Isaia

International Journal of Speleology

Human activities in subterranean environments can affect different ecosystem components, including the resident fauna. Subterranean terrestrial invertebrates are particularly sensitive to environmental change, especially microclimatic variations. For instance, microclimate modifications caused by the visitors may directly affect local fauna in caves opened to the public. However, since numerous factors act synergistically in modulating the distribution and abundance of subterranean species, it remains challenging to differentiate the impact of human intervention from that of other factors. Therefore, evidence of the impact of tourism on cave invertebrate fauna remains scarce. Over a year and with approximately two visits a month, we investigated …

Preparedness, Planning, And Advances In Operational Response, David G. Westerholm, Cameron H. Ainsworth, Christopher H. Barker, Peter G. Brewer, John W. Farrington, Dubravko Justic, Vassiliki H. Kourafalou, Steven A. Murawsk, Helena M. Solo-Gabriele

Marine Science Faculty Publications

During the last 50 years, the numbers and sizes of oil spills have been significantly reduced through prevention. But spills still occur, and it is critical to prepare for these events through planning and exercises. Operational decisions are designed to expedite cleanup and minimize overall impacts, yet they often involve complex trade-offs between a multitude of competing interests. It is imperative to apply the best technology and science when events occur. However, while planning and response tactics have evolved over time, determining what may be most at risk is often confounded by sparse background data, modeling limitations, scalability, or research …

The Genomic Processes Of Biological Invasions: From Invasive Species To Cancer Metastases And Back Again, Fargam Neinavaie, Arig Ibrahim-Hashim, Andrew M. Kramer, Joel S. Brown, Christina L. Richards

Integrative Biology Faculty and Staff Publications

The concept of invasion is useful across a broad range of contexts, spanning from the fine scale landscape of cancer tumors up to the broader landscape of ecosystems. Invasion biology provides extraordinary opportunities for studying the mechanistic basis of contemporary evolution at the molecular level. Although the field of invasion genetics was established in ecology and evolution more than 50 years ago, there is still a limited understanding of how genomic level processes translate into invasive phenotypes across different taxa in response to complex environmental conditions. This is largely because the study of most invasive species is limited by information …

Transcriptional Host–Pathogen Responses Of Pseudogymnoascus Destructans And Three Species Of Bats With White-Nose Syndrome, Christina M. Davy, Michael E. Donaldson, Hana Bandouchova, Ana M. Breit, Nicole A.S. Dorville, Yvonne A. Dzal, Veronika Kovacova, Emma L. Kunkel, Natália Martínková, Kaleigh J.O. Norquay, James E. Paterson, Jan Zukal, Jiri Pikula, Craig K.R. Willis, Christopher J. Kyle

KIP Articles

No abstract provided.

The Role Of Microhabitats In Structuring Cave Invertebrate Communities In Guatemala, Gabrielle S.M. Pacheco, Marconi Souza Silva, Enio Cano, Rodrigo L. Ferreira

International Journal of Speleology

Several studies have tried to elucidate the main environmental features driving invertebrate community structure in cave environments. They found that many factors influence the community structure, but rarely focused on how substrate types and heterogeneity might shape these communities. Therefore, the objective of this study was to assess which substrate features and whether or not substrate heterogeneity determines the invertebrate community structure (species richness and composition) in a set of limestone caves in Guatemala. We hypothesized that the troglobitic fauna responds differently to habitat structure regarding species richness and composition than non-troglobitic fauna because they are more specialized to live …

A Chemical Investigation Of Three Antarctic Tunicates Of The Genus Synoicum, Sofia Kokkaliari

USF Tampa Graduate Theses and Dissertations

Marine invertebrates, mainly sponges, tunicates and corals, have in the past few decades attracted the interest of the scientific community in regard to their secondary metabolites and their potential as leads in drug discovery. The genus Synoicum is comprised of multiple organisms found in both deep and shallow waters, tropical and cold environments around the world. The majority of the members of this genus that have been investigated can be found in shallow tropical waters due to the ease of accessing and collecting them. Of the cold environments, Antarctica is a representative of the environments where members of the Synoicum …

Safe And Effective Disinfection Of Show Cave Infrastructure In A Time Of Covid-19, Hazel A. Barton

International Journal of Speleology

The COVID-19 pandemic, caused by the novel coronavirus SARS-CoV-2, has been responsible for over 650,000 deaths worldwide. Transmission of SARS-CoV-2 occurs primarily through airborne transmission or direct human contact, demonstrating the importance of social distancing measures and the use of face masks to prevent infection. Nonetheless, the persistence of coronavirus on surfaces means that disinfection is important to limit the possibility of contact transmission. In this paper, the potential for various surfaces in show caves to serve as sources for SARS-CoV-2 infection is examined. Given the isoelectric potential (pI) of SARS and SARS-like coronaviruses, it is likely that they are …

Changes In Reef Fish Community Structure Following The Deepwater Horizon Oil Spill, Justin P. Lewis, Joseph H. Tarnecki, Steven B. Garner, David D. Chagaris, William F. Patterson Iii

C-IMAGE Publications

Large-scale anthropogenic disturbances can have direct and indirect effects on marine communities, with direct effects often taking the form of widespread injury or mortality and indirect effects manifesting as changes in food web structure. Here, we report a time series that captures both direct and indirect effects of the Deepwater Horizon Oil Spill (DWH) on northern Gulf of Mexico (nGoM) reef fish communities. We observed significant changes in community structure immediately following the DWH, with a 38% decline in species richness and 26% decline in Shannon-Weiner diversity. Initial shifts were driven by widespread declines across a range of trophic guilds, …

Elemental Climate Disaster Texts And Queer Ecological Temporality, Laura Mattson

USF Tampa Graduate Theses and Dissertations

This thesis approaches climate disaster texts as an opportunity to challenge constructions of the body, space, and time. Developed from embodied experiential knowledge about hurricanes, my work will explore how climate disasters can teach us to reimagine human-nature relationships. In my two analysis chapters, I use critical textual analysis and autoethnography to challenge particular representations of the human-nature relationship as a binary between nature and culture. By intervening in the nature-culture binary, I theorize queer ecological temporality as an opportunity to reveal and challenge constructions of nature and time. Working at the intersections of queer and ecocritical theory, this thesis …

The First Global Deep-Sea Stable Isotope Assessment Reveals The Unique Trophic Ecology Of Vampire Squid Vampyroteuthis Infernalis (Cephalopoda), A. V. Golikov, F. R. Ceia, R. M. Sabirov, J. D. Ablett, Ian G. Gleadall, Gudmundur Gudmundsson, Henk-Jan T. Hoving, Heather L. Judkins

USF St. Petersburg Campus Faculty Publications

Vampyroteuthis infernalis Chun, 1903, is a widely distributed deepwater cephalopod with unique morphology and phylogenetic position. We assessed its habitat and trophic ecology on a global scale via stable isotope analyses of a unique collection of beaks from 104 specimens from the Atlantic, Pacific and Indian Oceans. Cephalopods typically are active predators occupying a high trophic level (TL) and exhibit an ontogenetic increase in δ15N and TL. Our results, presenting the first global comparison for a deep-sea invertebrate, demonstrate that V. infernalis has an ontogenetic decrease in δ15N and TL, coupled with niche broadening. Juveniles are mobile zooplanktivores, while larger …

First Genome Sequence Of The Gunnison’S Prairie Dog (Cynomys Gunnisoni), A Keystone Species And Player In The Transmission Of Sylvatic Plague, Mirian T. N. Tsuchiya, Rebecca B. Dikow, Loren Cassin-Sackett

Integrative Biology Faculty and Staff Publications

Prairie dogs (genus Cynomys) are a charismatic symbol of the American West. Their large social aggregations and complex vocalizations have been the subject of scientific and popular interest for decades. A large body of literature has documented their role as keystone species of western North America’s grasslands: They generate habitat for other vertebrates, increase nutrient availability for plants, and act as a food source for mammalian, squamate, and avian predators. An additional keystone role lies in their extreme susceptibility to sylvatic plague (caused by Yersinia pestis), which results in periodic population extinctions, thereby generating spatiotemporal heterogeneity in both …

Bark-Foragers May Use Artificially Created Holes In Trees As A Foraging Cue, Ruby L. Hammond, Yazhmin A. Dozal, Tad C. Theimer

Arizona Birds

Little is known about cues used by insectivorous bark-foraging birds to locate prey. Because vision is thought to be the primary sensory system used by many avifauna to perceive the environment, we conducted an experiment to assess if insectivorous bark-foragers in northern Arizona forests used holes in trees as foraging cues. We set up 20 experimental stations, each consisting of a pair of equally sized ponderosa pines (Pinus ponderosa) that had no previous holes created by foraging woodpeckers or emergent boring-beetles. For each pair of trees, we drilled holes into one of the trees (treatment tree) and did not drill …

Moving Beyond The State: An Imperative For Genocide Prediction, Hollie Nyseth Brehm

Genocide Studies and Prevention: An International Journal

Studies of the onset of genocide and accompanying early warning and forecasting efforts have focused almost exclusively on states. This article suggests that genocide prediction must move beyond a purely state-centric approach. Specifically, I suggest three major avenues that will refine and complement existing research and related prediction efforts. These include 1) theorizing and analyzing non-state actors who commit genocide, 2) engaging in conflict-centered approaches, and 3) addressing the onset and triggers of genocide within subnational spaces. I conclude with a discussion of how these three avenues can be pursued simultaneously to inform more robust genocide prevention endeavors.

Springs Of The Arabian Peninsula: Historical Trends, Current Status And Human Impact In Saudi Arabia, Oman And Jordan, Kamal M. Aljohani

USF Tampa Graduate Theses and Dissertations

This research was conducted to update previous studies of the springs of the Arabian Peninsula (Saudi Arabia, Oman and Jordan). Approach: 76 springs were surveyed in between March and July 2018: 15 Saudi Arabia, 41 Oman and 20 Jordan to ascertain the current status, water quality and zooplankton benthos and fish communities. Investigation of the changes of biota and chemical parameters downstream from the springs source in Saudi Arabia. Results: Mercury exceeded the WHO and USEPA maximum contaminant level (MCL) in 63 of 76 springs, Aluminum exceeded MCL in 8 of 76 springs, and both were the common dissolved heavy …

Drivers Of Ant Composition, Richness, And Trophic Guilds In Neotropical Iron Ore Cavities, Rodrigo A. Castro-Souza, Thais G. Pellegrini, Marconi Souza-Silva, Rodrigo L. Ferreira

International Journal of Speleology

Subterranean habitats may be considered limiting for animal colonization, especially for ants, due to permanent darkness and mainly because of oligotrophic conditions. While not as deep as limestone caves, iron ore caves and other subterranean habitats may be more available for colonization because of their shallower depth. We use the richness and composition of ants to assess how differences in habitat structure affect the biodiversity and ecosystem function between cavities and surrounding epigean landscapes. We predicted that the distribution of ants would be different because of the variation in habitat structure and cavity conditions may act as a filter for …

The Peculiar Nature Of Florida’S Sandhill Wetlands, Ponds & Lakes— Their Ecohydrology, Relationship With The Regional Aquifer & Importance Within The Landscape., Renae Starr Nowicki

USF Tampa Graduate Theses and Dissertations

This dissertation explores the ecohydrology of Florida’s peculiar and poorly studied sandhill wetland and water features, particularly those located in west-central Florida. The primary research goals include: compilation and summarization of the available ecohydrologic information for features across Florida; comparison of water level and water geochemistry data between sandhill wetlands and waters and the regional aquifer to provide evidence of regional hydrologic control; and use of geophysical applications to examine the hydraulic connections between sandhill wetlands and waters and the regional aquifer.

From this research, a natural history of sandhill wetland and water ecohydrology is presented, highlighting: the differences between …

Ecological Responses Of Seascape Heterogeneity, Dinorah H. Chacin

USF Tampa Graduate Theses and Dissertations

A core aim of landscape ecologists as well as conservation and management practices has been to understand how processes that structure communities vary as a function of landscape context. Landscape heterogeneity (i.e. landscape composition, configuration) and fine-scale habitat characteristics can influence ecological interactions across habitat patches at a range of scales. Therefore, the main objective of this work is to apply a landscape ecology perspective to understand how seascape heterogeneity can influence demographic rates, community patterns, and ecological processes. To accomplish this overall goal, I conducted a literature review on oyster reefs from a seascape ecology perspective (Chapter 1) and …

Untapped Potential Of Gorgonian Octocorals For Detecting Environmental Change In Biscayne National Park, Florida, Usa, Selena A. Kupfner Johnson

USF Tampa Graduate Theses and Dissertations

One consequence of dramatic stony-coral loss has been recognition that gorgonian octocorals (Anthozoa: Octocorallia) have emerged among the dominant reef fauna. However, gorgonians are notoriously difficult to field-identify and consequently have been underrepresented in most monitoring efforts resulting in a lack of long-term data. The rich diversity of habitats, close proximity to the urban center of Miami, and connectivity to other areas of Florida have made Biscayne National Park an active location for reef research since its establishment in 1968. As such, a plethora of data (e.g., museum specimen and species abundance data) has been collected and stored in archives …

Taking An “Ecological Turn” In The Evaluation Of Rhetorical Interventions, Peter Cannon

USF Tampa Graduate Theses and Dissertations

This dissertation seeks to develop a new method for the evaluation and assessment of therapeutic libraries in a health ecology. To do so, I employ a modified version of Lloyd Bitzer’s rhetorical situation as a methodological tool for the investigation of health ecologies by applying an ecological analysis to an alcohol and other drug (AOD) treatment center in Tampa, Florida. By modifying Bitzer’s rhetorical situation schema and expanding the concept of health ecologies, I develop several innovations useful for tracing the impact of actants and rhetorical events specific to health and medicine. A major focus of this dissertation is a …

Can Florida's Springs Coast Provide A Potential Refuge For Calcifying Organisms? Evidence From Benthic Foraminifera, Kyle E. Amergian

USF Tampa Graduate Theses and Dissertations

Florida’s Springs Coast, located in the northeast Gulf of Mexico, includes an extensive system of salt marshes that discharge millions of liters of fresh water into coastal waters daily. The chemical properties of the spring waters include high alkalinity and high calcium concentrations due to the Paleogene limestone lithology of this region of Florida. Benthic foraminifers, which are recognized as ecologically important bioindicators, occur abundantly on the shallow shelf off the Springs Coast. Based on the prevalence of the benthic foraminifer Archaias angulatus in the seagrass beds along this shallow shelf, a previous study proposed that the Springs Coast provides …

Are Microclimate Conditions In El Malpais National Monument Caves In New Mexico, Usa Suitable For Pseudogymnoascus Growth?, Terry J. Torres-Cruz, Andrea Porras-Alfaro, Nicole A. Caimi, Ogochukwu Nwabologu, Edward W. Strach, Kaitlyn J.H. Read, Jesse M. Young, Debbie C. Buecher, Diana E. Northup

International Journal of Speleology

White-nose syndrome (WNS) is a bat disease caused by the fungal pathogen Pseudogymnoascus destructans, which thrives in cold and very humid environments where bats frequently hibernate. Conidia of Pseudogymnoascus species are often documented on bats prior to the onset of WNS, but characterization of high-risk areas defined by microclimate cave conditions have been lacking. Investigating the occurrence of this fungal genus and appropriate environmental conditions to support P. destructans in southwestern U.S. caves is key to understanding the sites most likely to be impacted by WNS. Microclimate conditions in ten caves at El Malpais (ELMA) National Monument in New …

Evolutionary Dynamics Of Influenza Type B In The Presence Of Vaccination: An Ecological Study, Lindsey J. Fiedler

USF Tampa Graduate Theses and Dissertations

Understanding the evolutionary dynamics of influenza type B in human hosts is a public health concern as we strive to minimize the disease burden in seasonal epidemics. Vaccination is considered the best defense against contracting influenza, and everyone over the age of 6 months is advised to get vaccinated before each season. The effect that vaccine-acquired immunity has on the evolution of influenza B remains unclear. In the U.S., vaccine-uptake is irregular across the states, and the differing coverages present an opportunity to study how vaccination influences viral evolution. This thesis analyzes the evolutionary patterns of influenza B in the …

The Function Of Crocodile Hatchling (Crocodylus Acutus) Distress Calls, June 2019, Dhiraj Ramireddy

Monteverde Institute: Tropical Ecology and Conservation

This study attempts to describe communication and behavior among Crocodylus acutus hatchlings. By understanding when and why vocalizations occur, new insight can be found regarding extant ancestors of crocodilians including dinosaurs. In Cuajiniquil, Costa Rica, I observed two Crocodylus acutus nests and captured five crocodile hatchlings. I observed the captured hatchling and its siblings recording vocalizations and movement patterns. After catching a random hatchling, it vocalized distress calls, and in response, the siblings would vocalize and approach the captive. These results support the hypothesis that a distress call of a hatchling seeks help from sibling crocodiles. An acoustical analysis displayed …

Environmental Legacies Of Pre-Contact And Historic Land Use In Antigua, West Indies, Anthony Richard Tricarico

USF Tampa Graduate Theses and Dissertations

Hurricanes Irma and Maria have recently demonstrated once again the susceptibility of contemporary populations across the Caribbean to climate-driven events. For islands such as Antigua in the eastern Caribbean, this vulnerability is partly a legacy of prior land use. As such, the actions of pre-Contact and historic period inhabitants are intertwined with contemporary socio-ecological challenges faced by Antiguans today. This research sought to understand the relationship between land use and land degradation from ca. AD 100 to the present in eastern Antigua utilizing two markers of anthropic activity: soil stability and soil quality. Specifically, this research sought to examine how …

Respiratory Infections And Risk For Development Of Narcolepsy: Analysis Of The Truven Health Marketscan Database (2008 To 2010) With Additional Assessment Of Incidence And Prevalence, Darren Scheer

USF Tampa Graduate Theses and Dissertations

Background and Significance: Narcolepsy is a chronic neurological disorder. These patients experience various psychiatric and physical comorbid diseases and mortality at an increased rate compared to the general population. Additionally, patients with narcolepsy experience approximately a doubling of various annual healthcare related facility visits, transactions, and costs comparatively. Narcolepsy with cataplexy is generally believed to be more prevalent than narcolepsy without cataplexy. However, incidence and prevalence estimates of narcolepsy (with or without cataplexy) vary widely with few large epidemiological studies conducted worldwide and none in the U.S evaluating these proportions in both children and adults utilizing a large health care …

Fish Communities On Natural And Artificial Reefs In The Eastern Gulf Of Mexico, Elizabeth C. Viau

USF Tampa Graduate Theses and Dissertations

Artificial reefs have been deployed throughout the world’s oceans to act as habitat and fishing enhancement tools. To expand current research on the role of artificial reefs in the marine community, ordination and multivariate regression methods were used here to analyze survey data of natural and artificial reefs. The reefs, located in the Northern Gulf of Mexico (NGOM) and on the West Florida Shelf (WFS), had been previously surveyed from 2004 to 2015 using remote operated vehicle and stationary video techniques. This study tested the hypothesis that similar functional roles are accounted for at both natural and artificial reef sites …

Fecundity Assessment Of Stone Crabs In The Eastern Gulf Of Mexico, Claire E. Crowley, Colin P. Shea, Ryan L. Gandy, Kendra L. Daly

Marine Science Faculty Publications

Accurate estimates of reproductive potential are a key component of any stock assessment. Multiple factors influencing the variability in batch fecundity of stone crabs Menippe spp. across the Florida fishery were quantified with a negative binomial regression model. Stone crabs were collected bimonthly from Cedar Key, Tampa Bay, Pavilion Key, and Sawyer Key from April 2013 through April 2015 for fecundity analysis. Batch fecundity (number of eggs per clutch) was estimated by using dry weights. Modeling results revealed that fecundity was strongly and positively related to carapace width and highly variable among locations, months, and years. Batch fecundity was lowest …