Digital Commons Network^™

Developing An Optimized Policy Tree-Based Reservoir Operation Model For High Aswan Dam Reservoir, Nile River, Erfan Goharian, Mohamed Shaltout, Mahdi Erfani, Ahmed Eladawy

Faculty Publications

The impacts of climate change on the Nile River and Grand Ethiopian Renaissance Dam (GERD) along with the increased water demand downstream suggest an urgent need for more efficient management of the reservoir system that is well-informed by accurate modeling and optimization of the reservoir operation. This study provides an updated water balance model for Aswan High Dam Reservoir, which was validated using combined heterogeneous sources of information, including in situ gauge data, bias-corrected reanalyzed data, and remote sensing information. To investigate the future challenges, the spatial distribution of the annual/seasonal Aswan High Dam Reservoir surface air temperature trends over …

Cross-Omics Analysis Of Fenugreek Supplementation Reveals Beneficial Effects Are Caused By Gut Microbiome Changes Not Mammalian Host Physiology, Katarina A. Jones, Allison J. Richard, J Michael Salbaum, Susan Newman Phd, Rn, Crrn, Faan, Richard Carmouche, Sara Webb, Annadora J. Bruce-Keller, Jacqueline M. Stephens, Shawn R. Campagna

Publications

Herbal remedies are increasing in popularity as treatments for metabolic conditions such as obesity and Type 2 Diabetes. One potential therapeutic option is fenugreek seeds (Trigonella foenum-graecum), which have been used for treating high cholesterol and Type 2 diabetes. A proposed mechanism for these benefits is through alterations in the microbiome, which impact mammalian host metabolic function. This study used untargeted metabolomics to investigate the fenugreek-induced alterations in the intestinal, liver, and serum profiles of mice fed either a 60% high-fat or low-fat control diet each with or without fenugreek supplementation (2% w/w) for 14 weeks. Metagenomic analyses of intestinal …

Cross-Omics Analysis Of Fenugreek Supplementation Reveals Beneficial Effects Are Caused By Gut Microbiome Changes Not Mammalian Host Physiology, Katarina A. Jones, Allison J. Richard, J Michael Salbaum, Susan Newman Phd, Rn, Crrn, Faan, Richard Carmouche, Sara Webb, Annadora J. Bruce-Keller, Jacqueline M. Stephens, Shawn R. Campagna

Publications

Herbal remedies are increasing in popularity as treatments for metabolic conditions such as obesity and Type 2 Diabetes. One potential therapeutic option is fenugreek seeds (Trigonella foenum-graecum), which have been used for treating high cholesterol and Type 2 diabetes. A proposed mechanism for these benefits is through alterations in the microbiome, which impact mammalian host metabolic function. This study used untargeted metabolomics to investigate the fenugreek-induced alterations in the intestinal, liver, and serum profiles of mice fed either a 60% high-fat or low-fat control diet each with or without fenugreek supplementation (2% w/w) for 14 weeks. Metagenomic analyses of intestinal …

Flood Depth Estimation During Hurricane Harvey Using Sentinel-1 And Uavsar Data, Sananda Kundu, Venkat Lakshmi, Raymond Torres

Faculty Publications

In August 2017, Hurricane Harvey was one of the most destructive storms to make landfall in the Houston area, causing loss of life and property. Temporal and spatial changes in the depth of floodwater and the extent of inundation form an essential part of flood studies. This work estimates the flood extent and depth from LiDAR DEM (light detection and ranging digital elevation model) using data from the Synthetic Aperture Radar (SAR)–Unmanned Aerial Vehicle Synthetic Aperture Radar (UAVSAR) and satellite sensor—Sentinel-1. The flood extent showed a decrease between 29–30 August and 5 September 2017. The flood depths estimated using the …

Low Exposure Long-Baseline Neutrino Oscillation Sensitivity Of The Dune Experiment, A. Aduszkiewicz, J. Aguilar, Z. Ahmad, B. Aimard, B. Ali-Mohammadzadeh, T. Alion, K. Allison, S. Alonso Monnsalve, M. Alrashed, C. Alt, A. Alton, P. Amedo, J. Anderson, C. Andreopooulos, M. Andreotti, M. P. Andrews, F. Andrianala, S. Andringa, N. Anfimov, Roberto Petti, Sanjib R. Mishra Ph.D., Et. Al.

Faculty Publications

The Deep Underground Neutrino Experiment (DUNE) will produce world-leading neutrino oscillation measurements over the lifetime of the experiment. In this work, we explore DUNE’s sensitivity to observe charge-parity violation (CPV) in the neutrino sector, and to resolve the mass ordering, for exposures of up to 100 kiloton-megawatt-calendar years (kt-MW-CY), where calendar years include an assumption of 57% accelerator uptime based on past accelerator performance at Fermilab. The analysis includes detailed uncertainties on the flux prediction, the neutrino interaction model, and detector effects. We demonstrate that DUNE will be able to unambiguously resolve the neutrino mass ordering at a 4⁢𝜎 (5⁢𝜎) …

Lakshadweep High Propagation And Impacts On The Somali Current And Eddies During The Southwest Monsoon, Paul A. Ernst, Bulusu Subrahmanyam, Corinne B. Trott

Faculty Publications

Climatological eddies in the Arabian Sea (AS), including the Lakshadweep High (LH) and the Great Whirl (GW), play major roles in the regional fluxes of upper ocean properties. For the first time, we apply an eddy tracking algorithm to the LH using altimetric sea surface height observations from 1993 through 2019. We additionally analyze the LH's water mass composition throughout its life cycle using the 1/12° Global eddy resolving physical ocean and sea ice reanalysis (GLORYS12). We observe that the second annual downwelling coastal Kelvin wave's (CKW) arrival during the winter monsoon is primarily responsible for generating the LH. In …

Determinants Of Covid-19 Vaccinations Among A State-Wide Year-Long Surveillance Initiative In A Conservative Southern State, Lídia Gual-Gonzalez, Maggie S.J. Mccarter, Kyndall Dye-Braumuller, Stella Self, Connor H. Ross, Chloe Rodriguez-Ramos, Virginie G. Daguise, Melissa Nolan Ph.D., Mph

Faculty Publications

By the end of 2021, the COVID-19 pandemic resulted in over 54 million cases and more than 800,000 deaths in the United States, and over 350 million cases and more than 5 million deaths worldwide. The uniqueness and gravity of this pandemic have been reflected in the public health guidelines poorly received by a growing subset of the United States population. These poorly received guidelines, including vaccine receipt, are a highly complex psychosocial issue, and have impacted the successful prevention of disease spread. Given the intricate nature of this important barrier, any single statistical analysis methodologically fails to address all …

Cluttering In The Speech Of Young Men With Fragile X Syndrome, Katherine Bangert, Kathleen Scaler Scott, Charley Adams, Jessica S. Kisenwether, Lisa Giuffre, Jenna Reed, Angela John Thurman, Leonard Abbeduto, Jessica Klusek

Faculty Publications

Purpose: Cluttering is a fluency disorder that has been noted clinically in individuals with fragile X syndrome (FXS). Yet, cluttering has not been systematically characterized in this population, hindering identification and intervention efforts. This study examined the rates of cluttering in male young adults with FXS using expert clinical opinion, the alignment between expert clinical opinion and objectively quantified features of cluttering from language transcripts, and the association between cluttering and aspects of the FXS phenotype.

Method: Thirty-six men with FXS (aged 18-26 years; M = 22, SD = 2.35) contributed language samples and completed measures of nonverbal cognition, autism …

Search For Lepton Flavor Violation In ϒ(3S) → E±Μ∓, J. P. Lees, V. Tisserand, A. Palano, G. Eigen, D. N. Brown, Yu. G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, R. Cheaib, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, V. P. Druzhinin, V. B. Golubev, E. A. Kozyrev, Milind Purohit, Jeffery R. Wilson, Et. Al.

Faculty Publications

We report on the first search for electron-muon lepton flavor violation (LFV) in the decay of a b quark and b antiquark bound state. We look for the LFV decay ϒ(3S) → e ^± μ^∓ in a sample of 118 million ϒ(3S) mesons from 27 fb⁻¹ of data collected with the BABAR detector at the SLAC PEP-II e⁺e⁻ collider operating with a 10.36 GeV center-of-mass energy. No evidence for a signal is found, and we set a limit on the branching fraction B[ϒ(3S) → e ^± μ^∓]< 3.6 × 10^{−7 …}

Task-Based Functional Connectivity And Blood-Oxygen-Level-Dependent Activation During Within-Scanner Performance Of Lumbopelvic Motor Tasks: A Functional Magnetic Resonance Imaging Study, Mark K. Jordon, Jill Campbell Stewart Pt,Phd, Sheri P. Silfies, Paul F. Beattie

Faculty Publications

There are a limited number of neuroimaging investigations into motor control of the lumbopelvic musculature. Most investigation examining motor control of the lumbopelvic musculature utilize transcranial magnetic stimulation (TMS) and focus primarily on the motor cortex. This has resulted in a dearth of knowledge as it relates to how other regions of the brain activate during lumbopelvic movement. Additionally, task-based functional connectivity during lumbopelvic movements has not been well elucidated. Therefore, we used functional magnetic resonance imaging (fMRI) to examine brain activation and ROI-to-ROI task-based functional connectivity in 19 healthy individuals (12 female, age 29.8 ± 4.5 years) during the …

The Transcription Factor Vpxlnr Is Required For The Growth, Development, And Virulence Of The Fungal Pathogen Valsa Pyri, Feng He, Alex-Machio Kange, Jie Yang, Jiaxin Xiao, Rongbo Wang, Lu Yang, Yifan Jia, Zhengqing Fu, Yancun Zhao, Fengquan Liu

Faculty Publications

Pears (Pyrus sp.) are widely cultivated in China, and their yield accounts for more than 60% of global pear production. The fungal pathogen Valsa pyri is a major causal agent of pear canker disease, which results in enormous losses of pear production in northern China. In this study, we characterized a Zn₂Cys₆ transcription factor that contains one GAL4 domain and a fungal-trans domain, which are present in VpxlnR. The vpxlnR gene expression was upregulated in the invasion stage of V. pyri. To investigate its functions, we constructed gene deletion mutants and complementary strains. We observed …

The Global Virome In One Network (Virion): An Atlas Of Vertebrate-Virus Associations, Colin J. Carlson, Rory J. Gibb, Gregory F. Albery, Liam Brierley, Ryan P. Connor, Tad Dallas, Evan A. Eskew, Anna C. Fagre, Maxwell J. Farrell, Hannah K. Frank, Renata L. Muylaert, Timothée Poisot, Angela L. Rasmussen, Sadie J. Ryan, Stephanie N. Seifert

Faculty Publications

Data that catalogue viral diversity on Earth have been fragmented across sources, disciplines, formats, and various degrees of open sharing, posing challenges for research on macroecology, evolution, and public health. Here, we solve this problem by establishing a dynamically maintained database of vertebrate-virus associations, called The Global Virome in One Network (VIRION). The VIRION database has been assembled through both reconciliation of static data sets and integration of dynamically updated databases. These data sources are all harmonized against one taxonomic backbone, including metadata on host and virus taxonomic validity and higher classification; additional metadata on sampling methodology and evidence strength …

Diabetes Mortality And Trends Before 25 Years Of Age: An Analysis Of The Global Burden Of Disease Study 2019, Ewerton Cousin, Bruce B. Duncan, Carolina Stein, Kanyin Liane Ong, Theo Vos, Ismaeel Yunusa Ph. D., Et Al.

Faculty Publications

Background

Methods

Off-Peak Ndvi Correction To Reconstruct Landsat Time Series For Post-Fire Recovery In High-Latitude Forests, Cuizhen Wang, Aiai Wang, Dianfan Guo, Haibo Li, Shuying Zang

Faculty Publications

Collecting long-term satellite image series in high latitudes has been challenging due to its short growing season. For off-peak imagery, its reflective properties need to be corrected to maintain the spectral consistency. This study compares three statistical approaches to reconstructing a 30-year normalized difference vegetation index (NDVI) series for forest recovery assessment after the 1987 Black Dragon Fire in the Greater Hinggan Mountains Forest, Northeast China. To correct the off-peak NDVI to peak NDVI, the Landsat paired regression takes advantage of the scene-to-scene linear relationship between the two images, the GIMMS booster approach compensates the NDVI increment rate based on …

Dbgc: Dimension-Based Generic Convolution Block For Object Recognition, Chirag Patel, Dulari Bhatt, Urvashi Sharma, Radhika Patel, Sharnil Pandya, Kirit Modi, Nagaraj Cholli, Akash Patel, Urvi Bhatt, Muhammad Ahmed Khan, Shubhankar Majumdar, Mohd Zuhair, Khushi Patel, Syed Aziz Shah, Hemant Ghayvat

Publications

The object recognition concept is being widely used a result of increasing CCTV surveillance and the need for automatic object or activity detection from images or video. Increases in the use of various sensor networks have also raised the need of lightweight process frameworks. Much research has been carried out in this area, but the research scope is colossal as it deals with open-ended problems such as being able to achieve high accuracy in little time using lightweight process frameworks. Convolution Neural Networks and their variants are widely used in various computer vision activities, but most of the architectures of …

Neural Correlates Of Inhibitory Control And Associations With Cognitive Outcomes In Bangladeshi Children Exposed To Early Adversities, Eileen F. Sullivan, Wanze Xie, Stefania Conte, John E. Richards, Talat Shama, Rashidul Haque, William A. Petri, Charles A. Nelson

Faculty Publications

There is strong support for the view that children growing up in low-income homes typically evince poorer performance on tests of inhibitory control compared to those growing up in higher income homes. Unfortunately, the vast majority of the work documenting this association has been conducted in high-income countries. It is not yet known whether the mechanisms found to mediate this association would generalize to children in low- and middle-income countries, where the risks of exposure to extreme poverty and a wide range of both biological and psychosocial hazards may be greater. We examined relations among early adversity, neural correlates of …

The Planted Catalog: The Role Of The Botanical Garden In Botany, Douglas Tuers

Journal of the South Carolina Academy of Science

This article will investigate the role of the botanical garden in botany. What its role is and how it fills it. This article will take the Missouri Botanical Garden as a case study, drawing heavily from archival material compromised mostly of letters between Henry Shaw and the prominent botanists of his day. This study also draws on the prominent histories of the Missouri Botanical Garden. The analysis use the philosophical tradition around reference in logic and language. This study argues that the botanical garden is a bridge between locality and herbaria. The order of the flora travels to the locality …

Teaching The “Wicked” In Geography: Educational Structure, Standards, And Teacher Training As Obstacles To Teaching About Climate Change, Jerry T. Mitchell

Journal of the South Carolina Academy of Science

No abstract provided.

Iseeq: Information Seeking Question Generation Using Dynamic Meta-Information Retrieval And Knowledge Graphs, Manas Gaur, Kalpa Gunaratna, Vijay Srinivasan, Hongxia Jin

Publications

Conversational Information Seeking (CIS) is a relatively new research area within conversational AI that attempts to seek information from end-users in order to understand and satisfy users’ needs. If realized, such a system has far-reaching benefits in the real world; for example, a CIS system can assist clinicians in pre-screening or triaging patients in healthcare. A key open sub-problem in CIS that remains unaddressed in the literature is generating Information Seeking Questions (ISQs) based on a short initial query from the end user. To address this open problem, we propose Information SEEking Question generator (ISEEQ), a novel approach for generating …

Large Scale Dataset Of Real Space Electronic Charge Density Of Cubic Inorganic Materials From Density Functional Theory (Dft) Calculations, Fancy Qian Wang, Kamal Choudhary, Jianjun Hu, Ming Hu

Faculty Publications

Driven by the big data science, material informatics has attracted enormous research interests recently along with many recognized achievements. To acquire knowledge of materials by previous experience, both feature descriptors and databases are essential for training machine learning (ML) models with high accuracy. In this regard, the electronic charge density ρ(r), which in principle determines the properties of materials at their ground state, can be considered as one of the most appropriate descriptors. However, the systematic electronic charge density ρ(r) database of inorganic materials is still in its infancy due to the difficulties in …

The Ability Of Resveratrol To Attenuate Ovalbumin-Mediated Allergic Asthma Is Associated With Changes In Microbiota Involving The Gut-Lung Axis, Enhanced Barrier Function And Decreased Inflammation In The Lungs, Prakash Nagarkatti, Esraah Alharris, Hasan Alghetaa, Juhua Zhou, Mitzi Nagarkatti

Faculty Publications

Asthma is a chronic respiratory disease highly prevalent worldwide. Recent studies have suggested a role for microbiome-associated gut–lung axis in asthma development. In the current study, we investigated if Resveratrol (RES), a plant-based polyphenol, can attenuate ovalbumin (OVA)-induced murine allergic asthma, and if so, the role of microbiome in the gut–lung axis in this process. We found that RES attenuated allergic asthma with significant improvements in pulmonary functions in OVA-exposed mice when tested using plethysmography for frequency (F), mean volume (MV), specific airway resistance (sRaw), and delay time(dT). RES treatment also suppressed inflammatory cytokines in the lungs. RES modulated lung …

Investigation Of Eating Disorder Risk And Body Image Dissatisfaction Among Female Competitive Cheerleaders, Allison B. Smith, Jennifer L. Gay, Eva V. Monsma, Shawn M. Arent, Mark A. Sarzynski, Dawn M. Emerson, Toni M. Torres-Mcgehee

Faculty Publications

Social agents associated with cheerleading environments are increasingly linked to body image dissatisfaction (BID) and eating disorders (ED). This study examined ED risk across team type, squad type, and position. An additional purpose determined BID in clothing type (daily clothing, midriff uniform, and full uniform), and meta-perceptions from the perspective of peers (MP peers), parents (MP parents), and coaches (MP coaches). Female cheerleaders ( = 268) completed an online survey which included demographics, the Eating Attitudes Test-26, and pathogenic behavior questions. Body image perceptions were assessed by using the Sex-Specific Figural Stimuli Silhouettes. Overall, 34.4% of cheerleaders ( = 268; …

Investigation Of Eating Disorder Risk And Body Image Dissatisfaction Among Female Competitive Cheerleaders, Allison B. Smith, Jennifer L. Gay, Eva V. Monsma, Shawn M. Arent Phd, Cscs*D, Fissn, Facsm, Fnak, Mark A. Sarzynski Ph.D., Faha, Facsm, Dawn M. Emerson Ph.D., Lat, Atc, Toni Torres-Mcgehee Phd, Lat, Atc

Faculty Publications

Social agents associated with cheerleading environments are increasingly linked to body image dissatisfaction (BID) and eating disorders (ED). This study examined ED risk across team type, squad type, and position. An additional purpose determined BID in clothing type (daily clothing, midriff uniform, and full uniform), and meta-perceptions from the perspective of peers (MP peers), parents (MP parents), and coaches (MP coaches). Female cheerleaders (n = 268) completed an online survey which included demographics, the Eating Attitudes Test-26, and pathogenic behavior questions. Body image perceptions were assessed by using the Sex-Specific Figural Stimuli Silhouettes. Overall, 34.4% of cheerleaders (n …

Measurement Of The Nucleon F N2 / F P2 Tructure Function Ratio By The Jefferson Lab Marathon Tritium/Helium-3 Deep Inelastic Scattering Experiment, D. Abrams, H. Albataineh, B. S. Aljawrneh, S. Alsalmi, D. Androic, K. Aniol, W. Armstrong, J. Arrington, H. Atac, T. Averett, C. Ayerbe Gayoso, X. Bai, J. Bane, S. Barcus, A. Beck, V. Bellini, H. Bhatt, D. Bhetuwal, D. Biswas, D. Blyth, Roberto Petti, Et. Al.

Faculty Publications

The ratio of the nucleon F₂ structure functions, F ⁿ₂ / F ^p₂ is determined by the MARATHON experiment from measurements of deep inelastic scattering of electrons from ³H and ³He nuclei. The experiment was performed in the Hall A Facility of Jefferson Lab using two high-resolution spectrometers for electron detection, and a cryogenic target system which included a low-activity tritium cell. The data analysis used a novel technique exploiting the mirror symmetry of the two nuclei, which essentially eliminates many theoretical uncertainties in the extraction of the ratio. The results, which cover the Bjorken …

Hippocampal Ensembles Represent Sequential Relationships Among An Extended Sequence Of Nonspatial Events, Babak Shahbaba, Lingge Li, Forest Agostinelli, Mansi Saraf, Keiland W. Cooper, Derenik Haghverdian, Gabriel A. Elias, Pierre Baldi, Norbert J. Fortin

Faculty Publications

The hippocampus is critical to the temporal organization of our experiences. Although this fundamental capacity is conserved across modalities and species, its underlying neuronal mechanisms remain unclear. Here we recorded hippocampal activity as rats remembered an extended sequence of nonspatial events unfolding over several seconds, as in daily life episodes in humans. We then developed statistical machine learning methods to analyze the ensemble activity and discovered forms of sequential organization and coding important for order memory judgments. Specifically, we found that hippocampal ensembles provide significant temporal coding throughout nonspatial event sequences, differentiate distinct types of task-critical information sequentially within events, …

Early-Stage Studies To Larger-Scale Trials: Investigators’ Perspectives On Scaling-Up Childhood Obesity Interventions, L. Von Klinggraeff, Roddrick Dugger, A. D. Okely, D. Lubans, R. Jago, S. Burkart

Faculty Publications

Background

Pilot/feasibility studies play an important role in the development and refinement of behavioral interventions by providing information about feasibility, acceptability, and potential efficacy. Despite their importance and wide-spread use, the approaches taken by behavioral scientists to scale-up early-stage studies to larger-scale trials has received little attention. The aim of our study was to understand the role that pilot studies play in the development and execution of larger-scale trials.

Methods

We conducted interviews with childhood obesity researchers who had published pilot behavioral interventions and larger-scale trials of the same or similar interventions. Questions were asked about the role of pilot …

Concurrent Identification And Characterization Of Protein Structure And Continuous Internal Dynamics With Redcraft, Hanin Omar, Aaron Hein, Casey A. Cole, Homayoun Valafar

Faculty Publications

Internal dynamics of proteins can play a critical role in the biological function of some proteins. Several well documented instances have been reported such as MBP, DHFR, hTS, DGCR8, and NSP1 of the SARS-CoV family of viruses. Despite the importance of internal dynamics of proteins, there currently are very few approaches that allow for meaningful separation of internal dynamics from structural aspects using experimental data. Here we present a computational approach named REDCRAFT that allows for concurrent characterization of protein structure and dynamics. Here, we have subjected DHFR (PDB-ID 1RX2), a 159-residue protein, to a fictitious, mixed mode model of …

February 2, 2022 Faculty Senate Minutes, University Of South Carolina

Faculty Senate

No abstract provided.

Ideology And Intolerance: The Case Of Colonialism, Anthony Walsh

Journal of Ideology

No abstract provided.

Study Protocol: Randomised Controlled Hybrid Type 2 Trial Evaluating The Scale-Up Of Two Arts Interventions For Postnatal Depression And Parkinson’S Disease, Tayana Soukup, Rachel Davis, Maria Baldellou Lopez, Andy Healey, Carolina Estevao, Daisy Fancourt, Paola Dazzan, Carmine Pariante, Hannah Dye, Tim Osborn, Rebecca Bind, Kristi Sawyer, Lavinia Rebecchini, Katie Hazelgrove, Alexandra Burton, Manonmani Manoharan, Rosie Perkins, Aleksandra Podlewska, Ray Chaudhuri, Fleur Derbyshire-Fox, Alison Hartley, Anthony Woods, Nikki Crane

Faculty Publications

INTRODUCTION: Research on the benefits of 'arts' interventions to improve individuals' physical, social and psychological well-being is growing, but evidence on implementation and scale-up into health and social care systems is lacking. This protocol reports the SHAPER-Implement programme (Scale-up of Health-Arts Programmes Effectiveness-Implementation Research), aimed at studying the impact, implementation and scale-up of: Melodies for Mums (M4M), a singing intervention for postnatal depression; and Dance for Parkinson's (PD-Ballet) a dance intervention for Parkinson's disease. We examine how they could be embedded in clinical pathways to ensure their longer-term sustainability. METHODS AND ANALYSIS: A randomised two-arm effectiveness-implementation hybrid type 2 trial …