Digital Commons Network^™

Light, Symbiosis, And The Biology Of Corals, Taylor R. Lindsay

Open Access Dissertations

Light is critical for the survival of most shallow water scleractinian corals. Corals are mixotrophs, acquiring energy via both feeding on water column plankton and photosynthesis via a symbiotic relationship with dinoflagellates living within their tissues. Corals rely heavily on photosynthetically derived metabolites through this symbiotic relationship, intrinsically linking their biology to light availability. Corals are known to modulate their biology to maximize light capture. However, there is a limited understanding of the interaction between morphology, physiology, and energetic strategy, as well as how light may affect these relationships. In Chapter 1, we quantified the morphology, physiology and energetic …

Assessing Distribution And Density Changes Of The Ecosystem Engineers, Rockweed And Kelp, In Narragansett Bay, Ri, Rebecca Venezia

Open Access Dissertations

Climate change and anthropogenic stressors in marine costal habitats include increased sea surface temperatures (SST) and precipitation. The impacts of these stressors can affect ecosystem engineer species, which create three-dimensional habitat space in and provide various ecosystem services that modify and maintain ecosystem resources. In Narragansett Bay, RI, USA there is anecdotal evidence that the habitat forming species of kelp, Saccharina latissima, and rockweeds, Ascophyllum nodosum and Fucus spp, are changing but few long-term studies have been conducted to verify this. We compared the historical studies from the 1960s to 2010s on seaweeds in Narraganset Bay to modern SCUBA …

Stability And Global Dynamics Of Autonomous And Nonautonomous Discrete Population Models With Stocking, Harvesting, And Cooperation, Sam Habach

Open Access Dissertations

This dissertation investigates the local and global behavior of several classes of discrete population models involving stocking, harvesting, and cooperation. The study is divided into three major manuscripts, each offering new theoretical in sights, bifurcation results, and applications to real-world data.

In Manuscript 1, we study the Beverton-Holt population models with constant and proportional stocking and harvesting, as well as sigmoid Beverton-Holt models under constant stocking and harvesting, both in autonomous and non-autonomous settings. We analyze stability and explore global dynamics using established local and global dynamics theorems, bifurcation theory, and explicit solutions when available. Special attention is given to …

Impacts Of Multiple Coastal Stressors Across Life-History Stages In The Eastern Oyster, Amaelia Zyck

Open Access Dissertations

Urbanized estuaries are characterized as a complex of biotic and abiotic stressors, which currently challenge marine life and are expected to intensify and become increasingly unpredictable under the ongoing impacts of climate change. The persistence of coastal species that inhabit these stressful environments will ultimately depend on their ability to adapt. Many of these species have complex life cycles, featuring distinct morphological and physiological developmental stages that can exhibit unique responses to environmental pressures. However, since all stages share the same genome, selective pressures acting on one stage can have cascading effects throughout the life cycle. The larval stage, being …

Microplastics Detection, Characterization, And Cytotoxicity Evaluation Via Lab-On-Chip, Liyuan Gong

Open Access Dissertations

Microplastics (MPs) pose a growing challenge to the ecological system, prompting increasing research efforts in diverse directions. Accurate characterization of MPs is essential for understanding their properties, relying on efficient sampling and detection techniques. Additionally, studying the cytotoxic effects of MPs is critical for evaluating their impact on biological systems. Lab-on-chip (LoC) systems offer significant advantages for precise particle manipulation and compatibility with advanced analytical instrumentation, making them valuable for MP detection and characterization. Microfluidic-based on-chip cell-culturing systems provide a controllable, physiologically relevant microenvironment for more realistic in vitro tissue modeling. By leveraging advanced LoC concepts and integrating state-of-the-art machine …

Investigating Mono-Driver Versus Multi-Driver Oncogenesis Via Alterations To Cell Signaling Pathways, Abygail Chapdelaine

Open Access Dissertations

The latest edition of Global Cancer Statistics released by the American Cancer Society reported approximately 20 million newly diagnosed cancer cases worldwide in 2022 with 9.7 million deaths. This ranks cancer as the second leading cause of death worldwide. For the majority of cancer patients, the standard treatment approach is chemotherapy and/or radiation therapy, and while this has been successful in some patients, a lack of specificity to cancer cells causes severe side-effects when these agents damage healthy cells. Despite extensive efforts that have gone into developing targeted cancer therapeutics that block functions specific to cancer, they have not been …

Analysis Of Early Interventions To Retain Underrepresented Students In Computer Science, Michael Conti

Open Access Dissertations

Computer science, like many STEM disciplines, faces persistent challenges in recruiting and retaining women and individuals from racially and ethnically minoritized backgrounds. This study examines whether targeted interventions can produce sustained improvements in academic performance and sense of belonging among these underrepresented groups. By analyzing longitudinal data, this research aims to evaluate the effectiveness of these interventions in promoting equity and persistence in computer science education.

Using An Ecological And Cultural Lens To Examine The 1st Year Persistence And Science Identity Development Of At-Risk Biology Students Experiencing Multiple Equity-Minded High Impact Practices, Aura Fajardo Grandidge

Open Access Dissertations

In this study, I used an ecological and a cultural perspective to examine the first-year experiences of two cohorts of biology students exposed to multiple equity-minded High Impact Practices (HIPs) designed to promote their persistence and science identity development.

In chapter 1, I applied Graham et al.’s Persistence Framework (2013) and Bronfenbrenner’s Ecological Systems Theory (1977) to investigate the bridges and barriers to persistence that biology students face while experiencing either an equity minded learning community, a first-year seminar, a course-based research experience, and/or an active learning introductory biology course. Using a mixed methods approach that focused on phenomenology, I …

The Chemical Ecology Of A Caribbean Boulder Coral During Restoration And The Interplay Between Fish Predation And Microbiome Variation, Catherine E. Raker

Open Access Dissertations

Coral reefs are one of the most biodiverse and productive ecosystems on the planet. In recent decades, however, climate change and other global threats have caused severe declines in live coral cover worldwide. Coral propagation, or “gardening,” is a popular strategy to attempt to restore healthy corals to degraded reefs. Slow-growing boulder corals are often restored using microfragmentation, where cutting coral colonies into roughly 1 cm² fragments can increase their growth rates up to 5x. However, extreme early mortality of fragments has been observed in the field, which has been at least partially attributed to predation. It has been …

“What’S Supp” Developing An In Vitro Model For Healthy Oral Biofilms, Alex Labossiere

Open Access Dissertations

The study of oral plaque has largely been influenced by the study of pathogens. Here in Chapter 1, I will discuss how this pathogenic focus has been dominant until the onset of microbiome research and begin to explain microbiomes in the context of supragingival plaque in homeostatic communities. From there we will then discuss the possible roots where dysbiosis may arise from plaque to cause disease and ways in which we can study healthy supragingival plaque by in vitro models.

In chapter 2, I will discuss molecular commensalism and how it can be viewed as a tool to further understand …

Non-Coding Rnas As Regulators Of Coral Biology, Jill Ashey

Open Access Dissertations

Coral reef ecosystems face increasing threats from climate change, yet knowledge of the molecular mechanisms that underlie coral acclimatization, resilience, and development remains incomplete. Among these mechanisms, non-coding RNAs (ncRNAs), specifically microRNAs (miRNAs), are emerging as key regulators of gene expression in response to environmental and developmental cues. This dissertation explores the diversity, function, and dynamics of ncRNAs in scleractinian corals across ecological, physiological, and developmental contexts. In Chapter 1, I present the first comprehensive analysis of ncRNAs - specifically long ncRNAs (lncRNAs), miRNAs, and piwi-RNAs (piRNAs) - in three reef-building coral species from Mo’orea, French Polynesia: Acropora pulchra, …

Electro-Vascular Dynamics During Auditory Processing: Variation Along The Schizotypy Continuum, John P. Mclinden

Open Access Dissertations

Electroencephalography (EEG) and functional near-infrared spectroscopy (fNIRS) are complementary noninvasive neuroimaging modalities that have contributed greatly to our understanding of the mechanisms of auditory processing. As an emerging technology, fNIRS has produced promising insights into the mechanisms of auditory processing, although considerable work remains to characterize hemodynamic responses in auditory tasks. In addition, the complementary nature of EEG and fNIRS and the relationships between the signals they record have been underexplored. In particular, nonlinear interactions between these signals remain under-characterized, despite the potential benefit to future multimodal neuroimaging studies. A challenge in understanding these interactions is the influence of systemic …

Uri Undergraduate And Graduate Course Catalog 2025-2026, University Of Rhode Island

URI Course Catalogs Archive

This is a downloadable PDF version of the University of Rhode Island course catalog.

Bioaccumulation Of Legacy And Novel Pfas In The Environment, Hesham Taher, Rainer Lohmann

Graduate School of Oceanography Faculty Publications

The bioaccumulation of per- and polyfluoroalkyl substances (PFAS), both legacy and novel, in the environment presents significant ecological and health risks. PFAS are a diverse group of synthetic chemicals known for their persistence and bioaccumulation, which can cause widespread environmental contamination and health risks. Strong carbon-fluorine bonds give these compounds unparalleled stability, preventing them from degrading and enabling them to endure in a range of environmental matrices, including water, soil, and biota. Legacy PFAS, including perfluorooctanoic acid (PFOA) and perfluorooctane sulfonic acid (PFOS), have been extensively studied and regulated, resulting in lower concentrations in some environmental media. However, novel PFAS, …

Rebuttal To “Correspondence On ‘Scientists’ Statement On The Chemical Definition Of Pfass”, Gabriel Sigmund, Marta Venier, Marlene Ågerstrand, Ian T. Cousins, Jamie Dewitt, Miriam L. Diamond, Jennifer Field, Alex T. Ford, Shira Joudan, Stefan Van Leeuwen, Rainer Lohmann, Carla Ng, Martin Scheringer, Anna Soehl, Noriyuki Suzuki, Xenia Trier, Sara Valsecchi, Penny Vlahos, Cora J. Young, Zhanyun Wang

Graduate School of Oceanography Faculty Publications

No abstract provided.

Furthering The Capabilities Of Diffusive-Gradient Passive Samplers For Per- And Polyfluoroalkyl Substances, Jarod Snook, Jitka Becanova, Simon Vojta, Rainer Lohmann

Graduate School of Oceanography Faculty Publications

Per- and polyfluoroalkyl substances (PFAS) are chemical pollutants of growing concern for many stakeholders. Due to their ubiquity, persistence in the environment, and potential for toxicity at low environmental concentrations, it is necessary to have convenient and reliable methods to measure PFAS in natural waters. Passive sampling methods (in situ preconcentration of PFAS) may be suitable for monitoring situations. One passive sampling design successfully employed for other, well studied contaminants (e.g., methylmercury) is the diffusive gradient in thin film sampler (DGT). However, the application of DGT for PFAS requires development and validation. Here, we iterate on previous PFAS-DGT studies by …

Corporate ‘Capture Strategies’ Impacting Human And Ecosystem Health, Alex T. Ford, Marlene Ågerstrand, Michael G. Bertram, Miriam L. Diamond, Rainer Lohmann, Andreas Schäffer, Martin Scheringer, Gabriel Sigmund, Anna Soehl, Maria Clara V.M. Starling, Noriyuki Suzuki, Marta Venier, Penny Vlahos

Graduate School of Oceanography Faculty Publications

The concept of regulatory capture has been extensively studied in academic literature, primarily within the social sciences. This phenomenon has been increasingly discussed in the environmental sciences as the impacts of regulatory capture on human and ecosystem health have become increasingly apparent. Regulatory capture is just one tactic employed by vested interests in the strategy of delaying, weakening, or abolishing policies designed to protect the public interest. Here, we define capture strategies as ‘the act of influencing individuals, organizations, or governments to prioritize corporate interests over those of human and ecosystem health’. Similar to the evolution of terms like whitewashing …

Changes In Pyrogenic Tracers Over The Last 15,000 Years In The Congo River Catchment Through Multi-Method Analysis, Samuel D. Katz, Helena Osterholz, Riley Barton, Ellen R.M. Druffel, Xiaodong Gao, Caroline A. Masiello, Cristina Santin, Tassiana S.G. Serafim, Sasha Wagner, Matthias Zabel, Rainer Lohmann

Graduate School of Oceanography Faculty Publications

Black carbon (BC), the most recalcitrant part of the pyrogenic carbon continuum, is formed by the incomplete combustion of biomass and fossil fuels. Methods for detecting BC include the chemical degradation of condensed aromatic compounds into benzenepolycarboxylic acids (BPCA), chemothermal oxidation of organic carbon at 375°C (CTO), ¹³C nuclear magnetic resonance combined with a molecular mixing model, thermogravimetry-differential scanning calorimetry, and the use of polycyclic aromatic hydrocarbons as tracers. However, there is limited knowledge about the comparability of these methods in marine sediments and their suitability as wildfire proxies. Here, we examined a sediment core from the Congo River …

Final Cruise Report: Tn401, Roxanne A. Beinart, Shawn Arellano, Craig Young

Graduate School of Oceanography Faculty Publications

No abstract provided.

The Effects Of Ph And Oncometabolites On Dna Repair Mediated By Alkb Family Enzymes, Quentin Mylie

Open Access Dissertations

Modifications of DNA and RNA, in particular methylations - such as N⁶-methyladenine (m6A), 5-methylcytosine (m5C), 1-methyladenine (m1A), and 3-methylcytosine (m3C) are crucial for gene regulation, genome integrity, and cellular adaptation. This dissertation investigates the role of the ALKB family of alpha-ketoglutarate (αKG) and iron-dependent dioxygenases in modulating these modifications, with a focus on how their activity is influenced by pH and metabolic factors, underscoring the connection between environmental conditions and epigenetic and genetic stability.

Chapter 1 provides a comprehensive literature review on the epigenetic and genetic regulation of DNA and RNA modifications, with a particular focus on methylation …

Textual Sediments: Genre And The Planetary Novel, William Bowden

Open Access Dissertations

This dissertation investigates how twenty-first-century prose fiction navigates the ecological and temporal dimensions of planetary crisis. In response to accelerating pressures - climate change, ecological collapse, and the intensification of capitalist modernity - literary studies has turned increasingly to the planetary as a conceptual frame. Yet this shift has often outpaced the development of adequate critical vocabularies and narrative methodologies. By drawing on ecocriticism, narrative theory, phenomenology, and related fields, Textual Sediments proposes a new framework for reading what it terms the planetary novel: a sedimentary genre characterized by temporal layering, formal hybridity, and a recursive engagement with scale. Through …

Confronting The Seaport Resilience Gap: Incentives, Frameworks, And Case Studies For Enhancing Resilience To Natural Hazards In Port Planning And Policy, Rosemarie Fusco

Open Access Dissertations

This dissertation investigates the critical issue of seaport resilience, focusing on the gaps in resilience planning and the role of incentives in motivating resilience investment. The research arc addresses the question: What incentivizes seaports to increase natural hazard resilience (NHR)? It is organized into three interconnected manuscripts, each examining distinct aspects of the problem.

The first manuscript critically examines the resilience planning approaches of Small Island Developing States (SIDS) as outlined in their National Adaptation Plans (NAPs), highlighting the limited consideration of seaports despite their critical role in economic and social connectivity. SIDS offer critical insight into seaport resilience due …

Intersections Of Inattention: A Qualitative Inquiry Into The Experiences Of Multiply Marginalized Students In Community College Settings, Jana N. Knibb

Open Access Dissertations

Educational research has examined the impact of expanded access to higher education for historically marginalized groups. However, research on the experiences of students who are both racially minoritized and dis/abled is limited. Findings suggest that, due to their intersectional identities, multiply marginalized dis/abled students (MMDS) navigate policies and practices related to racist ableism, which further marginalize them and create additional barriers in their higher education experiences. Expanding this research requires theoretical frameworks that account for students' identities, experiences, and barriers in higher educational spaces and contexts. This qualitative study, grounded in Dis/ability Studies and Critical Race Theory in Education (DisCrit), …

Per- And Polyfluoroalkyl Substances (Pfas) Effects On Tissue Disposition, Proteome, And Health Effects, Juliana Agudelo Areiza

Open Access Dissertations

Per- and polyfluoroalkyl substances are a class of nonbiodegradable synthetic aliphatic environmental toxicants that are ubiquitous in the environment. A small subset, specifically perfluorooctanesulfonic acid (PFOS) and perfluorooctanoic acid (PFOA), have been designated as highly hazardous to human health by the Environmental Protection Agency (EPA) under the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA). PFOA and PFOS-associated adverse health effects include, but are not limited to, immune suppression, thyroid dysfunction, increased serum cholesterol, liver damage (i.e., alanine aminotransferase (ALT)), and developmental toxicity (i.e., low fetal birth weight and neurotoxicity). In this doctoral dissertation, it was hypothesized that environmental PFAS …

Molecular Interactions Between The Shellfish Pathogen Vibrio Coralliilyticus Re22 And The Probiont Phaeobacter Inhibens S4sm, Jessica Coppersmith

Open Access Dissertations

Oyster larvae aquaculture is an important industry, both economically and environmentally, helping to create sustainable food systems by supplying seed oysters to farms, and also to restoration projects aimed at building coastal resilience and improving water quality by rejuvenating wild populations. However, oyster larvae are highly susceptible to rapid mortality events, crashes, which can seriously impact the industry. One source of these crashes in hatchery systems is vibriosis, caused by pathogenic species of Vibrio bacteria that are ubiquitous in temperate coastal waters, and with rising surface water temperatures their prevalence and virulence are increasing. To prevent these larval crashes from …

Queer Coasts: Beach Space, Climate Change, And The American Queer Community, Erin Cardoza

Open Access Master's Theses

Queer coastal spaces and beaches have been culturally and historically significant to the LGBTQ+ community for decades. These sites provide visibility, acceptance, and community allowing for LGBTQ+ folks to connect, organize, and find refuge from societal stigma and discrimination. However, these spaces face increasing threats from climate change, gentrification and privatization, and shifting societal dynamics. This research was conducted at two historically queer beaches on the American East Coast, Herring Cove in Provincetown, Massachusetts, and Jacob Riis Park in Queens, New York. This study examined the similarities and differences between these sites regarding (1) the importance of beach spaces for …

Swimming Against The Tide: Resistance Strategies And Agentic Skills Used By Childfree Women, Carolina Rojas-Madrigal

Journal of Feminist Scholarship

In pronatalist societies, the decision to remain childfree creates a conflict-laden scenario. This article explores how childfree women confront social hostility and defend their reproductive autonomy through resistance strategies and tactics. With this aim, the results of a feminist research, positioned from feminist Standpoint theory and digital ethnography, are presented. The researcher conducted biographical-narrative interviews with sixteen voluntary childless women from Mexico, Guatemala, Costa Rica, Ecuador, Peru, Spain, and the United Kingdom, all of whom were members of a childfree Facebook group. This research revealed that there is a persistent tension between societal pressure placed on these women in pronatalist …

Learning Outcomes, Benefits, And Challenges Of International Research Experiences For Students (Ires): An Exploratory Study Of An Ires Program In China, Yousef Jalali, James Barilla, Kirsten Davis, Vinod Lohani, Rolf Müller

Journal of International Engineering Education

Despite the increasing number of international programs targeting students’ learning of research and intercultural skills, there has been limited holistic investigation of students’ experiences employing both qualitative and quantitative methods. In this study, we incorporated several measures to explore students’ experiences in an International Research Experiences for Students (IRES) program, which benefited from the existing partnership between Virginia Tech in the U.S. and Shandong University in China. We examined students’ intercultural competence and interdisciplinary research skills and explored students’ stories of their lived experiences across three cohorts, each with five students, who completed the IRES program. Both open-ended survey responses …

Global Horizons: Assessing The Impact Of Study Abroad Programs On Intercultural Competence Development Pre-College Technology Students, Aparajita Jaiswal, Muna Sapkota

Journal of International Engineering Education

Across fields, college and university graduates are increasingly expected to perform effectively in diverse, multi-cultural work environments. Given this reality, Higher Education Institutions (HEIs) are actively designing strategies to help students develop intercultural skills. Prior research has revealed that deliberately structured study abroad programs are an effective approach to nurturing intercultural competence among graduates. Consciously designed study abroad programs can provide students with opportunities to learn and reflect on their experiences. In this study, we aim to understand the impact of a study abroad program on pre-freshmen students enrolled in a College of Technology. Using a mixed-methods design, we examined …

Faculty Senate Meeting Minutes October 10, 2024, University Of Rhode Island Faculty Senate

Faculty Senate Meeting Minutes

No abstract provided.