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The Open Science Framework & Reproducible Research: A New Space For Scholars & Librarians, Amanda Izenstark, Andrée Rathemacher

Technical Services Faculty Presentations

Slides from a presentation, "The Open Science Framework & Reproducible Research: A New Space for Scholars & Librarians," presented at the NELA & RILA Joint 2018 Annual Conference, Welcome: The Library is Your Space, on October 22, 2018 in Warwick, Rhode Island.

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Room: Greenwich

The Open Science Framework is a tool created to help address two crises in research: transparency and reproducibility. In this session, learn more about the reproducibility crisis and how librarians’ knowledge of the Open Science Framework can help researchers at all levels improve and share their work.

ALS Academic Librarians Section

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Additional files include …

Diasporadical: In Ryan Coogler's 'Black Panther,' Family Secrets, Cultural Alienation And Black Love, Terri P. Bowles

Markets, Globalization & Development Review

This is a review of the film Black Panther (2018) by Ryan Coogler, which traces the arc of the comic book hero as he faces an unanticipated challenge to his power by a man who threatens not just his throne but also the future of his nation. The review explores the ways in which the legacy of slavery and colonialism inform the distinct political and philosophical ideologies of the two main characters, and how inequality drives political thought.

Mediating Religious Literacy Among Primary School Children In Gujarat: Classroom As A Liminal Space, Kiran Vinod Bhatia

Journal of Media Literacy Education

Articulation of religious guidelines in the political milieu never takes place in a disembodied form; rather politically inscribed religious discourses are embedded within and conveyed through specific institutional channels, including media organizations and education institutions. My experiences of working as a media educator in villages in Gujarat have helped me understand how the learning of such discriminatory practices begin early as students use various linguistic and socio-cultural cues in order to make sense of the society. A classroom, however, provides the required space to entertain differences such that we can delimit the social hierarchies that are naturalized in the minds …

The Smarxt Media Literacy Program: Improving Evidence-Based Prescribing Among Medical Students, Bethany D. Corbin, Jason B. Colditz, Galen E. Switzer, Jaime E. Sidani, Patricia M. Klatt, Ted Schaffer, Brian A. Primack

Journal of Media Literacy Education

Many prescriptions written are not evidence-based, resulting in unnecessary morbidity and mortality. Media literacy may help medical trainees optimize evidence-based decision-making. In this study, we aimed to assess feasibility, acceptability, and initial efficacy of a media literacy prescribing program. We recruited 30 medical students, who completed animated video modules about pharmaceutical marketing and prescribing. We used a process evaluation and open-ended items to assess feasibility and acceptability, and knowledge tests before and after the intervention to assess efficacy. The program was feasible to implement and well-accepted. Knowledge and attitude targets around evidence-based prescribing and drug marketing improved after the intervention.

Abuse Or Be Abused: Traumatic Memory, Sex Inequality, And Millennium As A Socio-Literary Device, Kate Rose

Dignity: A Journal of Analysis of Exploitation and Violence

This article applies the research of French psychiatrist Muriel Salmona to literary analysis of Stieg Larsson’s protagonist, Lisbeth Salander, in the Millennium trilogy (The Girl with the Dragon Tattoo, 2008; The Girl Who Played with Fire, 2009; The Girl Who Kicked the Hornet’s Nest, 2010). It suggests that Larsson’s novels may be useful in raising awareness of childhood sexual abuse, through reading neglected signs linked to the neurology of traumatic memory. In the tradition of Nordic noir novels, hyperboles in Salander’s sensationalized identity serve to magnify and bring to light a misunderstood social problem. The article …

Never Again! Surviving Liberalized Prostitution In Germany, Sandra Norak, Ingeborg Kraus

Dignity: A Journal of Analysis of Exploitation and Violence

This article, co-authored by a six-year survivor of the sex trade industry in Germany (Sandra Norak) and a psychologist and trauma therapist (Ingeborg Kraus), provides perspectives on the difficulty of withstanding the coercion of traffickers and the difficulties of exiting prostitution in a country in which prostitution has been legalized, normalized and made “a job like any other.” This normalization persuades survivors to believe their traffickers that it is a legitimate occupation and encourages them to endure the violence. Liberalization also has prevented the development of needed trauma services to those seeking to exit the sex trade industry.

Correlations Of Self-Reported Androgen Deficiency In Ageing Males (Adam) With Stress And Sleep Among Young Adult Males, Camille M. Charlier, Makenzie L. Barr, Sarah E. Colby, Geoffrey Greene, Melissa D. Olfert

Nutrition Faculty Publications

Androgen deficiency in males has traditionally been predominantly limited to older men aged 50+ years. However, little is known of the correlation between hormonal disruption, stress, and sleep in college-aged males. This cross-sectional study investigates lifestyle behavior patterns in young men and a screening for potential androgen deficiency. A survey of 409 male students, as part of a larger USDA-funded GetFruved study, was analyzed for this subproject. Survey instruments used include the Androgen Deficiency in the Aging Male Questionnaire (ADAM) to assess for inadequate ADAM scores, the Perceived Stress Scale to measure stress levels and the Pittsburgh Sleep Quality Index …

Revisions To The Classification, Nomenclature, And Diversity Of Eukaryotes, Christopher E. Lane, Et Al

Biological Sciences Faculty Publications

This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, …

Augmentation Of Vaccine-Induced Humoral And Cellular Immunity By A Physical Radiofrequency Adjuvant, Yan Cao, Xiaoyue Zhu, Md Nazir Hossen, Prateek Kakar, Yiwen Zhao, Xinyuan Chen

Biomedical and Pharmaceutical Sciences Faculty Publications

Protein/subunit vaccines often require external adjuvants to induce protective immunity. Due to the safety concern of chemical adjuvants, physical adjuvants were recently explored to boost vaccination. Physical adjuvants use physical energies rather than chemicals to stimulate tissue stress and endogenous danger signal release to boost vaccination. Here we present the safety and potency of non-invasive radiofrequency treatment to boost intradermal vaccination in murine models. We show non-invasive radiofrequency can increase protein antigen-induced humoral and cellular immune responses with adjuvant effects comparable to widely used chemical adjuvants. Radiofrequency adjuvant can also safely boost pandemic 2009 H1N1 influenza vaccination with adjuvant effects …

Potential Roles Of Smell And Taste In The Orientation Behaviour Of Coral‐Reef Fish Larvae: Insights From Morphology, Yinan Hu, John E. Majoris, Peter M. Buston, Jacqueline F. Webb

Biological Sciences Faculty Publications

An ontogenetic analysis of the olfactory organ and the number and distribution of internal taste buds was carried out in two neon gobies (Elacatinus lori and Elacatinus colini) with the goal of revealing morphological trends that might inform an understanding of the roles of olfaction and taste in larval orientation behaviour. The pattern of development of the olfactory organ is unremarkable and enclosure of the olfactory epithelium occurs concurrently with metamorphosis and settlement in both species. Like other gobies, juvenile and adult E. lori and E. colini lack complex olfactory lamellae, and lack the accessory nasal sacs present …

Perils Of Hollywood Whitewashing?: A Review Of 'Ghost In The Shell' Movie, Kosuke Mizukoshi

Markets, Globalization & Development Review

'Ghost in the Shell' was first produced as a Japanese animated film in 1995. The movie and its sequels established a cult status due to the philosophical depth in portraying the posthuman condition. It was remade as a live action Hollywood film in 2017; and this version failed at the box office. One reason had to be the “whitewashing” issue – that the female protagonist was played by a white actress in the Hollywood movie, rather than a Japanese character as in the original anime. This review essay critically discusses issues of whitewashing, racial ‘identity’, the shifting identity of the …

Revisiting The Creation Of Meaning By Media: A Perspective From Japan, Satoko Suzuki

Markets, Globalization & Development Review

This paper revisits the role of media in the meaning-construction system. In consumer research, media are often regarded as gatekeepers in the system. This paper focuses on the media’s other role -- as the creator of meanings. In this paper, an interpretive analysis of magazine articles regarding the ‘jibun e no gohoubi’ [self-reward] consumption since 1990 has been conducted. The findings indicate that the media had created the meanings of sacred and profane consumption acts, in the domain of self-reward consumption. In addition, the paper explores the influence of media in liberating and empowering Japanese women.

Japan And Critical Marketing Theory: Opening A Window, Masaaki Takemura, Nikhilesh Dholakia

Markets, Globalization & Development Review

No abstract provided.

Financial Impact Of Incentive Spirometry, Adam E. M. Eltorai, Grayson L. Baird, Joshua Pangborn, Ashley Szabo Eltorai, Valentin Antoci, Katherine Paquette, Kevin Connors, Jacqueline Barbaria, Kimberly J. Smeals, Barbara Riley, Shyam A. Patel, Saurabh Agarwal, Terrance T. Healey, Corey E. Ventetuolo, Frank W. Sellke, Alan H. Daniels

College of Nursing Faculty Publications

Despite largely unproven clinical effectiveness, incentive spirometry (IS) is widely used in an effort to reduce postoperative pulmonary complications. The objective of the study is to evaluate the financial impact of implementing IS. The amount of time nurses and RTs spend each day doing IS-related activities was assessed utilizing an online survey distributed to the relevant national nursing and respiratory therapists (RT) societies along with questionnaire that was prospectively collected every day for 4 weeks at a single 10-bed cardiothoracic surgery step-down unit. Cost of RT time to teach IS use to patients and cost of nurse time spent reeducating …

Levodopa-Reduced Mucuna Pruriens Seed Extract Shows Neuroprotective Effects Against Parkinson’S Disease In Murine Microglia And Human Neuroblastoma Cells, Caenorhabditis Elegans, And Drosophila Melanogaster, Shelby L. Johnson, Hyun Y. Park, Nicholas A. Dasilva, Dhiraj A. Vattem, Hang Ma, Navindra P. Seeram

Biomedical and Pharmaceutical Sciences Faculty Publications

Mucuna pruriens (Mucuna) has been prescribed in Ayurveda for various brain ailments including ‘kampavata’ (tremors) or Parkinson’s disease (PD). While Mucuna is a well-known natural source of levodopa (L-dopa), published studies suggest that other bioactive compounds may also be responsible for its anti-PD effects. To investigate this hypothesis, an L-dopa reduced (Caenorhabditis elegans, and Drosophila melanogaster models. In BV-2 cells, MPE (12.5–50 μg/mL) reduced hydrogen peroxide-induced cytotoxicity (15.7−18.6%), decreased reactive oxygen species production (29.1−61.6%), and lowered lipopolysaccharide (LPS)-induced nitric oxide species release by 8.9–60%. MPE (12.5−50 μg/mL) mitigated SH-SY5Y cell apoptosis by 6.9−40.0% in a non-contact co-culture assay with …

Acquisitions Unit Annual Report 2017-2018, Andrée J. Rathemacher

Technical Services Reports and Statistics

Annual Report of the Acquisitions Unit, University Libraries, University of Rhode Island for FY18. Covers personnel, work flow, special projects, and serial, monograph, and e-resource acquisitions. Supplemental files include data on library materials expenditures by a number of variables as well as important working documents from the year.

Quantitative Ultrafast Spectroscopy And Microscopy Of Traditional And Soft Condensed Matter, Adam Card, Mohammad Mokim, Feruz Ganikhanov

Physics Faculty Publications

We demonstrate and analyze a series of experiments in traditional and soft condensed matter using coherent optical spectroscopy and microscopy with ultrafast time resolution. We show the capabilities of resolving both real and imaginary parts of the third-order nonlinearity in the vicinity of Raman resonances from a medium probed within microscopic volumes with an equivalent spectral resolution of better than 0.1 cm⁻¹. We can differentiate between vibrations of various types within unit cells of crystals, as well as perform targeted probes of areas within biological tissue. Vibrations within the TiO₆ octahedron and the ones for the Ti-O-P …

Shipboard Design And Fabrication Of Custom 3d-Printed Soft Robotic Manipulators For The Investigation Of Delicate Deep-Sea Organisms, Daniel M. Vogt, Kaitlyn P. Becker, Brennan Phillips, Moritz A. Graule, Randi D. Rotjan, Timothy M. Shank, Erik E. Cordes, Robert J. Wood, David F. Gruber

Ocean Engineering Faculty Publications

Soft robotics is an emerging technology that has shown considerable promise in deep-sea marine biological applications. It is particularly useful in facilitating delicate interactions with fragile marine organisms. This study describes the shipboard design, 3D printing and integration of custom soft robotic manipulators for investigating and interacting with deep-sea organisms. Soft robotics manipulators were tested down to 2224m via a Remotely-Operated Vehicle (ROV) in the Phoenix Islands Protected Area (PIPA) and facilitated the study of a diverse suite of soft-bodied and fragile marine life. Instantaneous feedback from the ROV pilots and biologists allowed for rapid re-design, such as adding “fingernails”, …

Genetically Engineered Mosquitoes, Zika And Other Arboviruses, Community Engagement, Costs, And Patents: Ethical Issues, Zahra Meghani, Christophe Boëte

Philosophy Faculty Publications

No abstract provided.

Accounting For Location Uncertainty In Azimuthal Telemetry Data Improves Ecological Inference, Brian D. Gerber, Mevin B. B. Hooten, Christopher P. Peck, Mindy B. Rice, James H. Gammonley, Anthony D. Apa, Amy J. Davis

Natural Resources Science Faculty Publications

Background: Characterizing animal space use is critical for understanding ecological relationships. Animal telemetry technology has revolutionized the fields of ecology and conservation biology by providing high quality spatial data on animal movement. Radio-telemetry with very high frequency (VHF) radio signals continues to be a useful technology because of its low cost, miniaturization, and low battery requirements. Despite a number of statistical developments synthetically integrating animal location estimation and uncertainty with spatial process models using satellite telemetry data, we are unaware of similar developments for azimuthal telemetry data. As such, there are few statistical options to handle these unique data …

Alma Link Resolver Subject Report 2017-2018, Andrée J. Rathemacher

Technical Services Reports and Statistics

Statistics for 2017-2018 on the number of OpenURL requests by Library of Congress classification code made to the Ex Libris Alma link resolver for items held by the University of Rhode Island Libraries.

Information provided includes Classification Code, Classifications, Number of Requests, Number of Clicked Requests, and % Clicks from Requests.

Alma Link Resolver Title & Issn Report (Top 500) 2017-2018, Andrée J. Rathemacher

Technical Services Reports and Statistics

Statistics for 2017-2018 on the total number of OpenURL requests by journal title and ISSN made to the Ex Libris Alma link resolver for items held by the University of Rhode Island Libraries. Includes only the top 500 journals.

Information provided includes journal Title, ISSN, EISSN, Number of Requests, Number of Clicked Requests, % Clicks from Requests.

Transboundary Cooperation Improves Endangered Species Monitoring And Conservation Actions: A Case Study Of The Global Population Of Amur Leopards, Anna Vitkalova, Limin Feng, Alexander N. Rybin, Brian D. Gerber, Dale G. Miquelle, Tianming Wang, Haitao Yang, Elena I. Shevtsova, Vladimir V. Aramilev, Jianping Ge

Natural Resources Science Faculty Publications

Political borders and natural boundaries of wildlife populations seldom coincide, often to the detriment of conservation objectives. Transnational monitoring of endangered carnivores is rare, but is necessary for accurate population monitoring and coordinated conservation policies. We investigate the benefits of collaboratively monitoring the abundance and survival of the critically endangered Amur leopard, which occurs as a single transboundary population across China and Russia. Country‐specific results overestimated abundance and were generally less precise compared to integrated monitoring estimates; the global population was similar in both years: 84 (70–108, 95% confidence interval). Uncertainty in country‐specific annual survival estimates were approximately twice the …

The Effects Of Volume Versus Intensity Of Long-Term Voluntary Exercise On Physiology And Behavior In C57/Bl6 Mice, Lisa S. Robison, Dominique L. Popescu, Maria E. Anderson, Steven I. Beigelman, Shannon M. Fitzgerald, Antonina E. Kuzmina, David A. Lituma, Sarima Subzwari, Michalis Michaelos, Brenda J. Anderson, William E. Van Nostrand, John K. Robinson

Biomedical and Pharmaceutical Sciences Faculty Publications

Cardiovascular exercise (CVE) is associated with healthy aging and reduced risk of disease in humans, with similar benefits seen in animals. Most rodent studies, however, have used shorter intervention periods of a few weeks to a few months, begging questions as to the effects of longer-term, or even life-long, exercise. Additionally, most animal studies have utilized a single exercise treatment group – usually unlimited running wheel access – resulting in large volumes of exercise that are not clinically relevant. It is therefore incumbent to determine the physiological and cognitive/behavioral effects of a range of exercise intensities and volumes over a …

Division Of Research And Economic Development Monthly Report For June 2018, Uri Division Of Research And Economic Development

Reports (Research and Economic Development)

The monthly reports include statistics for project proposals and awards received by individual academic and administrative departments at the University of Rhode Island.

Marine Resource Management And Conservation In The Anthropocene, Shankar Aswani, Xavier Basurto, Sebastian Ferse, Marion Glaser, Lisa Campbell, Joshua E. Cinner, Tracey Dalton, Lekelia D. Jenkins, Marc L. Miller, Richard Pollnac, Ismael Vaccaro, Patrick Christie

Marine Affairs Faculty Publications

Because the Anthropocene by definition is an epoch during which environmental change is largely anthropogenic and driven by social, economic, psychological and political forces, environmental social scientists can effectively analyse human behaviour and knowledge systems in this context. In this subject review, we summarize key ways in which the environmental social sciences can better inform fisheries management policy and practice and marine conservation in the Anthropocene. We argue that environmental social scientists are particularly well positioned to synergize research to fill the gaps between: (1) local behaviours/needs/worldviews and marine resource management and biological conservation concerns; and (2) large-scale drivers of …

A Method To Develop Vocabulary Checklists In New Languages And Their Validity To Assess Early Language Development, Elizabeth L. Prado, John Phuka, Eugenia Ocansey, Kenneth Maleta, Per Ashorn, Ulla Ashorn, Seth Adu-Afarwuah, Brietta M. Oaks, Anna Lartey, Kathryn G. Dewey

Nutrition Faculty Publications

Background

Since the adoption of United Nations’ Sustainable Goal 4.2 to ensure that all children have access to quality early child development (ECD) so that they are ready for primary education, the demand for valid ECD assessments has increased in contexts where they do not yet exist. The development of early language ability is important for school readiness. Our objective was to evaluate the validity of a method to develop vocabulary checklists in new languages to assess early language development, based on the MacArthur-Bates Communicative Development Inventories.

Methods

Through asking mothers of young children what words their children say and …

Teaching Social Justice: Intergenerational Service-Learning In Digital Media Course, Margaret O. Finucane, Linda M. Seiter, Nathan C. Gehlert

Journal of Media Literacy Education

Digital media play an increasingly dominant role in reinforcing and challenging power inequality in social and institutional relationships. This paper describes how a service-learning component engaged students in community-based interactions that not only deepened their understanding of course content but also increased their commitment to diversity, community issues, and personal development. A close look at three case studies shows that integrating service learning into a first year seminar on digital media and social justice had positive outcomes for students when intentionally paired with community partners offering course-related projects.

Youth And The City: Reflective Photography As A Tool Of Urban Voice, Roman Gerodimos

Journal of Media Literacy Education

YYoung people’s engagement with urban public space has been facing a number of obstacles that reflect a lack of understanding of their needs, values and priorities. The emergence of digital devices and social media as integral elements of youth culture adds further urgency to the need to understand how young people themselves visually articulate their perceptions of life in the city. Bringing together elements from urban studies, youth studies and digital media literacy, this paper puts forward a pedagogic and research approach that aims to facilitate youth engagement with urban landscapes and the community. Participatory photography was used a tool …

Failure To Reproduce: The Replication Crisis In Research — Can Librarians Help?, Andrée J. Rathemacher, Amanda Izenstark, Harrison Dekker

Technical Services Faculty Presentations

Slides from a presentation, "Failure to Reproduce: The Replication Crisis in Research — Can Librarians Help?," presented at the 2018 ACRL New England Chapter Annual Conference, Failing Forward: Experimentation and Creativity in Libraries, on May 4, 2018 in Plymouth, Massachusetts.

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Room: Carver

A recent survey by Nature found that more than 70% of researchers have tried and failed to reproduce another scientist’s experiments and more than half have failed to reproduce their own experiments! Learn more about the “reproducibility crisis” in research and how librarians are helping by teaching researchers about reproducible workflows, proper management of code and data, …