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Spatiotemporal Reaction Dynamics Control In Two-Photon Polymerization For Enhancing Writing Characteristics, Aofei Mao, Sarah Fess, Nada Kraiem, P. Li, Zhipeng P. Wu, Qiuchi Zhu, Xi Huang, Peixun Fan, Bai Cui, Jean-Francois Silvain, Suxing Hu, Mitchell Anthamatten, Sean P. Regan, David Harding, Yongfeng Lu Mar 2024

Spatiotemporal Reaction Dynamics Control In Two-Photon Polymerization For Enhancing Writing Characteristics, Aofei Mao, Sarah Fess, Nada Kraiem, P. Li, Zhipeng P. Wu, Qiuchi Zhu, Xi Huang, Peixun Fan, Bai Cui, Jean-Francois Silvain, Suxing Hu, Mitchell Anthamatten, Sean P. Regan, David Harding, Yongfeng Lu

Department of Electrical and Computer Engineering: Faculty Publications

Since 2001, 3D microfabrication based on two-photon polymerization (TPP) has drawn extensive attention and interest in biology, optics, photonics, material science, and high-energy physics. The in-volume fabrication capability due to the threshold behavior of two-photon absorption enables TPP higher flexibility compared with other nanofabrication techniques. However, as determined by the in-volume fabrication feature as well as various reaction dynamics, the writing characteristics of TPP, such as throughput, accuracy, surface quality, and fabrication capability, are still limited. Herein, a comprehensive study is performed on the spatiotemporal behavior of reaction dynamics during TPP fabrication, mainly focusing on spatiotemporal characteristics of radical diffusion, …


Honey Bee Colony Behavior And Ontogeny Are Adversely Affected When Exposed To A Pesticide-Contaminated Environment, Rogan Tokach, Autumn H. Smart, Carol Fassbinder-Orth, Chandler Fong, Judy Wu-Smart Mar 2024

Honey Bee Colony Behavior And Ontogeny Are Adversely Affected When Exposed To A Pesticide-Contaminated Environment, Rogan Tokach, Autumn H. Smart, Carol Fassbinder-Orth, Chandler Fong, Judy Wu-Smart

Department of Entomology: Faculty Publications

Honey bees exhibit age polyethism and thus have a predictable sequence of behaviors they express through developmental time. Numerous laboratory studies show exposure to pesticides may impair critical honey bee behaviors (brood care, foraging, egg-laying, etc.) that adversely affect colony productivity and survival. There are fewer studies that examine the impacts of pesticides in natural field settings, especially given the challenges of implementing treatment groups and controlling variables. This study helps address the need for impact studies on pollinators under field conditions to assess the consequences of chemical overuse and dependency in agricultural and urban landscapes. To assess the impact …


Up-Regulation Of Non-Photochemical Quenching Improves Water Use Efficiency And Reduces Whole-Plant Water Consumption Under Drought In Nicotiana Tabacum, Benjamin Turc, Seema Sahay, Jared Haupt, Talles De Oliveira Santos, Geng Bai, Katarzyna Glowacka Mar 2024

Up-Regulation Of Non-Photochemical Quenching Improves Water Use Efficiency And Reduces Whole-Plant Water Consumption Under Drought In Nicotiana Tabacum, Benjamin Turc, Seema Sahay, Jared Haupt, Talles De Oliveira Santos, Geng Bai, Katarzyna Glowacka

Center for Plant Science Innovation: Faculty Publications

Water supply limitations will likely impose increasing restrictions on future crop production, underlining a need for crops that use less water per mass of yield. Water use efficiency (WUE) therefore becomes a key consideration in developing resilient and productive crops. In this study, we hypothesized that it is possible to improve WUE under drought conditions via modulation of chloroplast signals for stomatal opening by up-regulation of non-photochemical quenching (NPQ). Nicotiana tabacum plants with strong overexpression of the PsbS gene encoding PHOTOSYSTEM II SUBUNIT S, a key protein in NPQ, were grown under differing levels of drought. The PsbS-overexpressing lines lost …


Identification Of Novel Small Molecule Inhibitors Of Twin Arginine Translocation (Tat) Pathway And Their Effect On The Control Of Campylobacter Jejuni In Chickens, Loïc Deblais, Mary Drozd, Anand Kumar, Janet Antwi, James Fuchs, Rahul Khupse, Yosra A. Helmy, Gireesh Rajashekara Mar 2024

Identification Of Novel Small Molecule Inhibitors Of Twin Arginine Translocation (Tat) Pathway And Their Effect On The Control Of Campylobacter Jejuni In Chickens, Loïc Deblais, Mary Drozd, Anand Kumar, Janet Antwi, James Fuchs, Rahul Khupse, Yosra A. Helmy, Gireesh Rajashekara

School of Veterinary and Biomedical Sciences: Faculty Publications

Introduction: Control of Campylobacter from farm to fork is challenging due to the frequent emergence of antimicrobial-resistant isolates. Furthermore, poultry production systems are known reservoirs of Campylobacter. The twinarginine translocation (Tat) pathway is a crucial bacterial secretion system that allows Campylobacter to colonize the host intestinal tract by using formate as the main source of energy. However, Tat pathway is also a major contributing factor for resistance to copper sulfate (CuSO4).

Methods: Since mammals and chickens do not have proteins or receptors that are homologous to bacterial Tat proteins, identification of small molecule (SM) inhibitors …


Development Of Quantitative Structure Activity Relationships (Qsars) For Predicting The Aggregation Of Tio2 Nanoparticles Under Favorable Conditions, Jaewoong Lee Mar 2024

Development Of Quantitative Structure Activity Relationships (Qsars) For Predicting The Aggregation Of Tio2 Nanoparticles Under Favorable Conditions, Jaewoong Lee

Department of Civil and Environmental Engineering: Faculty Publications

This study developed multi-linear regression (MLR) quantitative structure-activity relationships (QSARs) to predict n-TiO2 aggregation in the presence of high concentrations of representative emerging organic contaminants (EOCs), which presented favorable conditions to interaction with n-TiO2. The largest diameter change (Δ 517 nm at 0 h and Δ 1164 nm at 12 h) of n-TiO2 was observed by estrone, while the smallest diameter change (Δ -114 nm at 0 h and – 4 nm at 12 h) was observed by lincomycin during experimental periods. In addition, the zeta potential changes of n-TiO2 were …


Synthesis Of Current Evidence On Factors Influencing The Suitability Of Synthetic Biodegradable Mulches For Agricultural Applications: A Systematic Review, Michael Madin, Katherine Nelson, Kanji Fatema, Karina Schoengold, Abhilekha Dalal, Ikenna Onyekwelu, Rushrukh Rayan, Sanaz Saki Norouzi Mar 2024

Synthesis Of Current Evidence On Factors Influencing The Suitability Of Synthetic Biodegradable Mulches For Agricultural Applications: A Systematic Review, Michael Madin, Katherine Nelson, Kanji Fatema, Karina Schoengold, Abhilekha Dalal, Ikenna Onyekwelu, Rushrukh Rayan, Sanaz Saki Norouzi

Department of Agricultural Economics: Faculty Publications

Mulching practice offers farmers an opportunity to minimize the effects of drought, water loss, and soil erosion on crop production. Plastic film is widely used as a mulching material; however, contamination of arable lands by residual plastic has become a serious concern. Synthetic biodegradable mulch films and sprays may offer a more sustainable alternative to plastic films, however current evidence on the factors that influence the suitability of these products for agricultural applications is fragmented, making it unclear under what conditions these products meet agronomic, environmental, and societal needs. We address this gap by conducting a systematic review of studies …


Daily Injection Of The Β2 Adrenergic Agonist Clenbuterol Improved Muscle Glucose Metabolism, Glucose-Stimulated Insulin Secretion, And Hyperlipidemia In Juvenile Lambs Following Heat-Stress-Induced Intrauterine Growth Restriction, Rachel L. Gibbs, James Wilson, Rebecca M. Swanson, Joslyn K. Beard, Zena M. Hicks, Haley Beer, Eileen Marks-Nelson, Ty B. Schmidt, Jessica Lynn Petersen, Dustin T. Yates Mar 2024

Daily Injection Of The Β2 Adrenergic Agonist Clenbuterol Improved Muscle Glucose Metabolism, Glucose-Stimulated Insulin Secretion, And Hyperlipidemia In Juvenile Lambs Following Heat-Stress-Induced Intrauterine Growth Restriction, Rachel L. Gibbs, James Wilson, Rebecca M. Swanson, Joslyn K. Beard, Zena M. Hicks, Haley Beer, Eileen Marks-Nelson, Ty B. Schmidt, Jessica Lynn Petersen, Dustin T. Yates

Department of Animal Science: Faculty Publications

Stress-induced fetal programming diminishes β2 adrenergic tone, which coincides with intrauterine growth restriction (IUGR) and lifelong metabolic dysfunction. We determined if stimulating β2 adrenergic activity in IUGR-born lambs would improve metabolic outcomes. IUGR lambs that received daily injections of saline or the β2 agonist clenbuterol from birth to 60 days were compared with controls from pair-fed thermoneutral pregnancies. As juveniles, IUGR lambs exhibited systemic inflammation and robust metabolic dysfunction, including greater (p < 0.05) circulating TNF, IL-6, and non-esterified fatty acids, increased (p < 0.05) intramuscular glycogen, reduced (p < 0.05) circulating IGF-1, hindlimb blood flow, glucose-stimulated insulin secretion, and muscle glucose oxidation. Daily clenbuterol fully recovered (p < 0.05) circulating TNF, IL-6, and nonesterified fatty acids, hindlimb blood flow, muscle glucose oxidation, and intramuscular glycogen. Glucose-stimulated insulin secretion was partially recovered (p < 0.05) in clenbuterol-treated IUGR lambs, but circulating IGF-1 was not improved. Circulating triglycerides and HDL cholesterol were elevated (p < 0.05) in clenbuterol-treated IUGR lambs, despite being normal in untreated IUGR lambs. We conclude that deficient β2 adrenergic regulation is a primary mechanism for several components of metabolic dysfunction in IUGR-born offspring and thus represents a potential therapeutic target for improving metabolic outcomes. Moreover, benefits from the β2 agonist were likely complemented by its suppression of IUGR-associated inflammation.


Low Similarity Between Parasite Communities Of Ten Sympatric Carangid Species, Juan M. Osuna-Cabanillas, Emigdio Marín-Enríquez, Ana P. Martínez-Falcón, Juan T. Timi, Francisco N. Morales-Serna Mar 2024

Low Similarity Between Parasite Communities Of Ten Sympatric Carangid Species, Juan M. Osuna-Cabanillas, Emigdio Marín-Enríquez, Ana P. Martínez-Falcón, Juan T. Timi, Francisco N. Morales-Serna

Harold W. Manter Laboratory of Parasitology: Library Materials

Host phylogeny and ecological convergence are two factors thought to influence the structure of parasite communities. The aims of this study were to determine the diversity of metazoan parasites of 10 sympatric fish species of the family Carangidae from the southeastern Gulf of California, and to analyze their similarity at infracommunity and component community levels, in order to determine if the host species, particularly those congeneric with similar ecological characteristics, exhibit similar assemblages of parasites. In total, 874 fish specimens were examined and 40 parasite species were identified. The component community was composed by 21 parasite species in Caranx caninus …


Composting Reduces The Risks Of Resistome In Beef Cattle Manure At The Transcriptional Level, Yuepeng Sun, Zachery R. Staley, Bryan Woodbury, Jean-Jack Riethoven, Xu Li Mar 2024

Composting Reduces The Risks Of Resistome In Beef Cattle Manure At The Transcriptional Level, Yuepeng Sun, Zachery R. Staley, Bryan Woodbury, Jean-Jack Riethoven, Xu Li

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Transcriptomic evidence is needed to determine whether composting is more effective than conventional stockpiling in mitigating the risk of resistome in livestock manure. The objective of this study is to compare composting and stockpiling for their effectiveness in reducing the risk of antibiotic resistance in beef cattle manure. Samples collected from the center and the surface of full-size manure stockpiling and composting piles were subject to metagenomic and metatranscriptomic analyses. While the distinctions in resistome between stockpiled and composted manure were not evident at the DNA level, the advantages of composting over stockpiling were evident at the transcriptomic level in …


Microclimate, An Important Part Of Ecology And Biogeography, Julia Kemppinen, Jonas J. Lembrechts Mar 2024

Microclimate, An Important Part Of Ecology And Biogeography, Julia Kemppinen, Jonas J. Lembrechts

School of Biological Sciences: Faculty Publications

Brief introduction: What are microclimates and why are they important? Microclimate science has developed into a global discipline. Microclimate science is increasingly used to understand and mitigate climate and biodiversity shifts. Here, we provide an overview of the current status of microclimate ecology and biogeography in terrestrial ecosystems, and where this field is heading next.

Microclimate investigations in ecology and biogeography: We highlight the latest research on interactions between microclimates and organisms, including how microclimates influence individuals, and through them populations, communities and entire ecosystems and their processes. We also briefly discuss recent research on how organisms shape microclimates from …


Influence Of Maternal Supplementation With Vitamins, Minerals, And (Or) Protein/Energy On Placental Development And Angiogenic Factors In Beef Heifers During Pregnancy, Bethania J. Dávila Ruiz, Carl R. Dahlen, Kacie L. Mccathy, Joel S. Caton, Jennifer L. Hurlbert, Friederike Baumgaertner, Ana Clara B. Menezes, Wellison J. S. Diniz, Sarah R. Underdahl, James D. Kirsch, Kevin K. Sedivec, Kerri A. Bochantin, Pawel P. Borowicz, Sebastián Canovas, Lawrence P. Reynolds Mar 2024

Influence Of Maternal Supplementation With Vitamins, Minerals, And (Or) Protein/Energy On Placental Development And Angiogenic Factors In Beef Heifers During Pregnancy, Bethania J. Dávila Ruiz, Carl R. Dahlen, Kacie L. Mccathy, Joel S. Caton, Jennifer L. Hurlbert, Friederike Baumgaertner, Ana Clara B. Menezes, Wellison J. S. Diniz, Sarah R. Underdahl, James D. Kirsch, Kevin K. Sedivec, Kerri A. Bochantin, Pawel P. Borowicz, Sebastián Canovas, Lawrence P. Reynolds

Department of Animal Science: Faculty Publications

The effect of vitamins and minerals supplementation (VTM) and/or two rates of body weight gain (GAIN) on bovine placental vascular development and angiogenic factors gene expression were evaluated in two experiments: In Exp. 1, crossbred Angus heifers (n = 34) were assigned to VTM/NoVTM treatments at least 71 days before breeding to allow changes in the mineral status. At breeding, through artificial insemination (AI), heifers were assigned to low-gain (LG) 0.28 kg/d or moderate-gain (MG) 0.79 kg/d treatments, resulting in NoVTM-LG (Control; n = 8), NoVTM-MG (n = 8), VTM-LG (n = 9), and VTM-MG (n = …


Publications And Other Works By R. F. Diffendal, Jr., Robert F. Diffendal Jr. Mar 2024

Publications And Other Works By R. F. Diffendal, Jr., Robert F. Diffendal Jr.

School of Natural Resources: Faculty Publications

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Chapters in Books
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Geologic Maps
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Cover Photographs
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Newspaper and Other Articles
Test-Hole Logs
Television Programs
Geonotes
Abstracts
Reviews
Manuscripts Accepted (A), Submitted (S), or in Preparation (P)
Geologic Maps in Press
Geologic Maps-Nebraska
Public Documents
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Updated March 2024


A Novel System To Culture Human Intestinal Organoids Under Physiological Oxygen Content To Study Microbial-Host Interaction, Tatiana Y. Fofanova, Umesh C. Karandikar, Jennifer M. Auchtung, Reid L. Wilson, Antonio J. Valentin, Robert A. Britton, K. Jane Grande-Allen, Mary K. Estes, Kristi Hoffman, Sashirekha Ramani, Christopher J. Stewart, Joseph F. Petrosino Mar 2024

A Novel System To Culture Human Intestinal Organoids Under Physiological Oxygen Content To Study Microbial-Host Interaction, Tatiana Y. Fofanova, Umesh C. Karandikar, Jennifer M. Auchtung, Reid L. Wilson, Antonio J. Valentin, Robert A. Britton, K. Jane Grande-Allen, Mary K. Estes, Kristi Hoffman, Sashirekha Ramani, Christopher J. Stewart, Joseph F. Petrosino

Food for Health: Publications

Mechanistic investigation of host-microbe interactions in the human gut are hindered by difficulty of co-culturing microbes with intestinal epithelial cells. On one hand the gut bacteria are a mix of facultative, aerotolerant or obligate anaerobes, while the intestinal epithelium requires oxygen for growth and function. Thus, a coculture system that can recreate these contrasting oxygen requirements is critical step towards our understanding microbial-host interactions in the human gut. Here, we demonstrate Intestinal Organoid Physoxic Coculture (IOPC) system, a simple and cost-effective method for coculturing anaerobic intestinal bacteria with human intestinal organoids (HIOs). Using commensal anaerobes with varying degrees of oxygen …


The Nebraska Bird Review (March 2024) 92(1), Whole Issue Mar 2024

The Nebraska Bird Review (March 2024) 92(1), Whole Issue

Nebraska Bird Review

Winter Field Report, December 2023–February 2024, by W. Ross Silcock

Birds and the People They Were Named For

Annual Color Photo Section

2023–2024 Christmas Bird Counts, by Don Paseka

Annual Treasurer’s Report for 2023, by Jan Johnson

Subscription and Organization Information


Nebraska Ornithologists' Union Treasurer's Report, December 31, 2023, Jan Johnson Mar 2024

Nebraska Ornithologists' Union Treasurer's Report, December 31, 2023, Jan Johnson

Nebraska Bird Review

No abstract provided.


Annual Color Photo Section Mar 2024

Annual Color Photo Section

Nebraska Bird Review

Annual color photograph section (the first six pages show examples of this year’s theme: species whose common names include the names of people):

Cassin’s Finch
Cassin’s Kingbird
Steller’s Jay
Cooper’s Hawk
Baird’s Sandpiper
Baird’s Sparrow
Bullock’s Oriole
Hybrid Baltimore × Bullock’s Oriole
Clark’s Grebes
Sprague’s Pipit
Forster’s Tern
Brewer’s Sparrow
Nelson’s Sparrow
Swainson’s Hawk
Swainson’s Thrush
Clark’s Nutcracker
Ross’s Goose
Sabine’s Gull
LeConte’s Sparrow
Harris’s Sparrow
Henslow’s Sparrow
Townsend’s Solitaire
Wilson’s Warbler
Wilson’s Snipe
Lincoln’s Sparrow
Wilson’s Phalarope
Franklin’s Gulls
Pine Grosbeak
Bald Eagle
Pine Siskin
Piping Plover
Ovenbird
Blackheaded Grosbeak
Red Crossbill
Ash-throated Flycatcher
Long-eared Owl
Horned Grebes


Synopsis Of The Genus Cerabilia, André Larochelle, Marie-Claude Larivière Mar 2024

Synopsis Of The Genus Cerabilia, André Larochelle, Marie-Claude Larivière

Insecta Mundi

The genus Cerabilia Laporte de Castelnau (Carabidae: Abacetini) is revised for New Zealand. Thirteen species are recognized.

Seven species are described as new: Cerabilia (Cerabilia) cordata Larochelle and Larivière new species, Cerabilia (Cerabilia) kaihoka Larochelle and Larivière new species, Cerabilia (Cerabilia) laevis Larochelle and Larivière new species, Cerabilia (Cerabilia) motunau Larochelle and Larivière new species, Cerabilia (Cerabilia) rugosa Larochelle and Larivière new species, Cerabilia (Cerabilia) takaka Larochelle and Larivière new species, Cerabilia (Cerabilia) willi Larochelle and Larivière new species. …


Anthrenus (Anthrenus) Muehlei, A New Species (Coleoptera: Dermestidae: Megatominae) From Iran, Graham J. Holloway, Andreas Herrmann Mar 2024

Anthrenus (Anthrenus) Muehlei, A New Species (Coleoptera: Dermestidae: Megatominae) From Iran, Graham J. Holloway, Andreas Herrmann

Insecta Mundi

A new species, Anthrenus muehlei Holloway and Herrmann (Coleoptera: Dermestidae: Megatominae), from Iran is described. Images of internal and external features are presented. Only female specimens were found and described, but the bursa copulatrix contains obvious sclerites enabling easy differentiation from all other known species from the Palaearctic A. pimpinellae complex. The possible function and taxonomic implication of the sclerites is mentioned.

ZooBank registration. urn:lsid:zoobank.org:pub:97661C20-803E-4785-A4B0-58B16C94D9A2


New Host Records For Nearctic And Neotropical Spider Wasps (Hymenoptera: Pompilidae), Frank E. Kurczewski, Rick C. West, Cecilia Waichert Mar 2024

New Host Records For Nearctic And Neotropical Spider Wasps (Hymenoptera: Pompilidae), Frank E. Kurczewski, Rick C. West, Cecilia Waichert

Insecta Mundi

We present new and atypical host records for 78 species, subspecies, species-groups, and variants of spider wasps (Hymenoptera: Pompilidae) from North America and South America. The records are listed in modified taxonomic order following the Catalog of Hymenoptera in America North of Mexico, Volume 2, Apocrita (Aculeata) (Krombein 1979). These records are an extension of previous host records reported by Kurczewski (2010), Kurczewski and Edwards (2012), and Kurczewski et al. (2017, 2020, 2022b). New genus and species host records are given for the genera and subgenera Calopompilus Ashmead, Chirodamus Haliday, Pepsis Fabricius, Hemipepsis Dahlbom, Priocnessus Banks, Entypus Dahlbom, Pompilocalus Roig-Alsina, …


Birds And The People They Were Named For Mar 2024

Birds And The People They Were Named For

Nebraska Bird Review

This year the theme for our color photo section was birds named for people. For the purposes of our selections, we looked only at the common names of birds, although some species also reflect the names of people in their scientific names. Many species are named for people, but photos of the ones listed here are on the first six pages of this year’s color section.

Baird’s Sandpiper, Baird’s Sparrow Spencer Fullerton Baird (1823-1887) was the first curator and later secretary of the Smithsonian Institution and was instrumental in expanding the Institution’s natural history collections. John James Audubon named the …


Winter Field Report, December 2023–February 2024, W. Ross Silcock Mar 2024

Winter Field Report, December 2023–February 2024, W. Ross Silcock

Nebraska Bird Review

As was the case for winter 2022–2023, the big general story was the large number of reports of tardy fall migrants and unexpectedly northerly occurrences in midwinter, an apparent residue of relatively mild early winter temperatures. These reports involved at least 50 species, many of them waterbirds and native sparrows, but including several other passerines as well. Notable were about 12 waterfowl species, five grebe species, an interesting late Dec peak in each of the last three years of Sandhill Cranes, record late Whooping Cranes, a 4th winter record of Dunlin, high numbers of Double-crested Cormorants, a wintering Rock Wren, …


2023–2024 Christmas Bird Counts, Don Paseka Mar 2024

2023–2024 Christmas Bird Counts, Don Paseka

Nebraska Bird Review

With the resurrection of the Kearney count, twenty CBCs [Christmas Bird Counts] were run in the 2023–2024 season. This is four more than last year and one more than the previous high number of nineteen from 2021. Although the Crawford, Harrison, and Scottsbluff counts were postponed because of snow, the weather on count days was mild with an average high of 43°F and an average low of 27°F, resulting in mostly open water. Rain and mud eliminated access to several normally productive areas of the Harlan County count which still produced the highest number of species (94). Lake McConaughy produced …


Stage And Discharge Prediction From Documentary Time-Lapse Imagery, Kenneth W. Chapman, Troy E. Gilmore, Mehrube Mehrubeoglu, Christian D. Chapman, Aaron R. Mittelstet, John E. Stranzl Jr. Mar 2024

Stage And Discharge Prediction From Documentary Time-Lapse Imagery, Kenneth W. Chapman, Troy E. Gilmore, Mehrube Mehrubeoglu, Christian D. Chapman, Aaron R. Mittelstet, John E. Stranzl Jr.

Conservation and Survey Division: Faculty and Staff Publications

Imagery from fixed, ground-based cameras is rich in qualitative and quantitative information that can improve stream discharge monitoring. For instance, time-lapse imagery may be valuable for filling data gaps when sensors fail and/or during lapses in funding for monitoring programs. In this study, we used a large image archive (>40,000 images from 2012 to 2019) from a fixed, ground-based camera that is part of a documentary watershed imaging project (https://plattebasintimelapse.com/). Scalar image features were extracted from daylight images taken at one-hour intervals. The image features were fused with United States Geological Survey stage and discharge data as response variables …


Soil Nitrate Prediction Using Ftir-Atr, Vis-Nir, And Raman Spectroscopy, Sabiha Ferdous Mar 2024

Soil Nitrate Prediction Using Ftir-Atr, Vis-Nir, And Raman Spectroscopy, Sabiha Ferdous

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Fourier transform infrared spectroscopy (FTIR) combined with Attenuated total reflectance (ATR), Visible-Near Infrared spectroscopy (Vis-NIR), and Raman spectroscopy (RS) are non-destructive techniques for rapid determination of nitrogen compounds in soil. Leveraging FTIR-ATR and Vis-NIR spectra using partial least squares regression (PLSR) modeling, the study aims to predict soil nitrate content and explored the feasibility of Raman spectroscopy to detect nitrate (NO3-), nitrite (NO2-), and ammonium (NH4+) in soil. Soil samples were collected from four different fields, dried, sieved (2mm), and then used for collecting spectra (FTIR-ATR and Vis-NIR). Laboratory analysis was …


Pollinator Communities And Their Ecosystem Services At Conservation Grasslands And Adjacent Croplands, Araceli Gomez Villegas Mar 2024

Pollinator Communities And Their Ecosystem Services At Conservation Grasslands And Adjacent Croplands, Araceli Gomez Villegas

Department of Entomology: Dissertations, Theses, and Student Research

Pollinators are intrinsically linked to the success of unmanaged and managed ecosystems by providing pollination services that aid in the reproduction of wildflowers and many crops. Land use change, habitat loss, fragmentation, and related landscape-level phenomena (for example, increased pesticide exposure) threaten pollinators and have been associated with population declines. In the Midwestern region of the United States, land conversion of native prairies and grasslands to row-crop agriculture has been one of the largest contributors to pollinator habitat loss. Conservation programs, such as the Conservation Reserve Program, have worked towards removing environmentally sensitive lands from agriculture production and enrolling them …


Weakly Supervised Attention-Based Recognition Under Spectral, Turbulence, And Resource Variations, Kshitij Naresh Nikhal Mar 2024

Weakly Supervised Attention-Based Recognition Under Spectral, Turbulence, And Resource Variations, Kshitij Naresh Nikhal

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

While supervised optimization paradigms are ubiquitous across diverse recognition systems, the risk of over-fitting and increasing bias have limited their applicability.

This dissertation focuses on unsupervised learning—learning without precisely curated data—and argues that unsupervised learning methods can enable both discriminability and generalizability. Through the use of attention-based machine learning and advanced clustering, unsupervised methods are able to focus on fine-grained information in images without any explicit supervision. The dissertation introduces a domain-bridging framework for tasks like cross-spectrum matching and long-range recognition, utilizing intra-domain clustering and inter-domain matching to generate pseudo-labels. Additionally, a hash-based network is proposed to accelerate the search …


Narratives Of Reproductive Control In The American Eugenics Movement, Cassandra M. Provost Mar 2024

Narratives Of Reproductive Control In The American Eugenics Movement, Cassandra M. Provost

Honors Program: Senior Projects (Public)

In this paper, I will explore the eugenics movement as a pseudo-scientific political, social, and legal phenomenon which had a devastating historical impact on America’s most vulnerable women, as well as briefly discuss its residual effects on contemporary reproductive rights conversations, through the lens of literature. Using an interdisciplinary discourse and narrative analysis approach, I identify two distinct themes within the explored narratives: (1) the importance of a government’s attempt to override a person’s autonomy by destroying the person’s ability to reproduce, and (2) the impropriety of actions based on a negative attitude toward disabled or undesirable persons. In my …


A Dietary Variety: Analyzing The Impacts Of Diverse Vs Worm-Exclusive Diets On The Blanding’S Turtle (Emydoidea Blandingii), Caitlin F. Copenhaver Mar 2024

A Dietary Variety: Analyzing The Impacts Of Diverse Vs Worm-Exclusive Diets On The Blanding’S Turtle (Emydoidea Blandingii), Caitlin F. Copenhaver

Honors Program: Senior Projects (Public)

The endangered Blanding’s turtle (Emydoidea blandingii) is a species with a generally diverse diet in their freshwater wetland habitats; they consume prey such as crayfish and snails. In captivity, these options often become more limited due to logistical reasons. As ex situ conservation efforts such as captive rearing and head-starting are becoming more popular for this species, it will be important to gain more insight on how these more limited diets might affect these turtles. This study describes a comparison between diets in six captive Blanding’s turtles from September to November of 2023, with three turtles receiving only …


Field Research Report: Results From The Enreec Vri Field For The 2021, 2022, And 2023 Crop Seasons, Derek M. Heeren, Ali T. Mohammed, Eric Wilkening, Christopher M. U. Neale, Alan L. Boldt, Ankit Chandra, Precious Nneka Amori, Ivo Z. Goncalves, Yeyin Shi, Guillermo R. Balboa Mar 2024

Field Research Report: Results From The Enreec Vri Field For The 2021, 2022, And 2023 Crop Seasons, Derek M. Heeren, Ali T. Mohammed, Eric Wilkening, Christopher M. U. Neale, Alan L. Boldt, Ankit Chandra, Precious Nneka Amori, Ivo Z. Goncalves, Yeyin Shi, Guillermo R. Balboa

Department of Agricultural and Biological Systems Engineering: Presentations and White Papers

Long-term irrigation management research has been conducted from 2014 to 2023 for corn and soybean at the Eastern Nebraska Research, Extension, and Education Center (ENREEC) Variable Rate Irrigation (VRI) Field located in subhumid east-central Nebraska (in the Lower Platte North Natural Resources District). The objective of this report was to present the overall results from the VRI Field for 2021 to 2023. Across the three growing seasons, there were the following irrigation treatments: Best Management Practice (BMP), 50% BMP, 125% BMP, rainfed, Spatial ET Modeling Interface (SETMI), SDD1, SDD2, machine-learning-based Cyber-Physical System (CPS), a student team recommended rate, and industry …


Variation In Leaf Chlorophyll Concentration In Response To Nitrogen Application Across Maize Hybrids In Contrasting Environments, Kyle M. Linders, Dipak K. Santra, James C. Schnable, Brandi Sigmon Mar 2024

Variation In Leaf Chlorophyll Concentration In Response To Nitrogen Application Across Maize Hybrids In Contrasting Environments, Kyle M. Linders, Dipak K. Santra, James C. Schnable, Brandi Sigmon

Department of Agronomy and Horticulture: Faculty Publications

Leaf chlorophyll concentration was measured for 84 publicly available maize hybrids grown under three nitrogen fertilizer treatments in two contrasting environments in Nebraska. The effect of nitrogen treatment on chlorophyll response was found to be significant (p < 0.05) for both locations. In Scottsbluff, chlorophyll concentrations increased significantly with increasing nitrogen rate, while no significant difference was found between medium and high nitrogen in Lincoln. Within equivalent nitrogen treatments, chlorophyll was more abundant in Lincoln than Scottsbluff for nearly every hybrid. Hybrid response was not consistent between environments, with approximately 11% of variance explained by genotype by environment interaction.